View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14108_low_2 (Length: 410)
Name: NF14108_low_2
Description: NF14108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14108_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 180 - 394
Target Start/End: Complemental strand, 26649724 - 26649510
Alignment:
| Q |
180 |
tcacactcagtgttttgtgtcaaggtcatgttgggagaattacatttacctaatgcatctagcacccttggtaaataggctttaaaaatggtgtttctag |
279 |
Q |
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| T |
26649724 |
tcacactcagtgttttgtgtcaaggtcatgttgggagaatcacatttacctaatgcatctagcacccttggcaaataggctttaaaaatggtgtttctag |
26649625 |
T |
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| Q |
280 |
tacccttggcaagcaacagtataacatcaataaaggcttaacctacatgaacttctatttgatcaacaataaatgctttttcatctgatgtaaaacaata |
379 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26649624 |
taccattggcaagcaacagtataacatcaataaaggcttaacctacatgaacttctatttgatcaacaataaatgctttttcatctgatgtaaaacaata |
26649525 |
T |
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| Q |
380 |
tttaaaccagaaatt |
394 |
Q |
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||||||||||||||| |
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| T |
26649524 |
tttaaaccagaaatt |
26649510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 305 - 394
Target Start/End: Original strand, 20013776 - 20013865
Alignment:
| Q |
305 |
atcaataaaggcttaacctacatgaacttctatttgatcaacaataaatgctttttcatctgatgtaaaacaatatttaaaccagaaatt |
394 |
Q |
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| T |
20013776 |
atcaataaaggcttaatctacatgaacttatacttgatcaacaataaaagcatgttcctctgatgtaaaacaagatttaaagcagaaatt |
20013865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 26650997 - 26650930
Alignment:
| Q |
10 |
agtagcaaaggctgcttcttatattactcccttcgatcagtaaggagtgactcatttaagtttttcat |
77 |
Q |
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| T |
26650997 |
agtagaaaaggctacttcttatattactcccttcgatcagtaagaaatgactcatttaagtttttcat |
26650930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 139 - 178
Target Start/End: Complemental strand, 26650868 - 26650829
Alignment:
| Q |
139 |
tgtttttactaaaatatctttattaagtcttctaaaaatt |
178 |
Q |
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| T |
26650868 |
tgtttttactaaaatatctttattaagtcttctaaaaatt |
26650829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 297
Target Start/End: Complemental strand, 1723272 - 1723236
Alignment:
| Q |
261 |
ttaaaaatggtgtttctagtacccttggcaagcaaca |
297 |
Q |
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| T |
1723272 |
ttaaaaatggtgcctctagtacccttggcaagcaaca |
1723236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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