View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14108_low_3 (Length: 406)
Name: NF14108_low_3
Description: NF14108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14108_low_3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 20 - 406
Target Start/End: Complemental strand, 35450203 - 35449817
Alignment:
| Q |
20 |
aggtatagagacaggtggaatctcaaaagactcaagaggtggaggagggtgtttccattgaggaagtggtcctgcaagaagaagagttttaagaagagga |
119 |
Q |
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| T |
35450203 |
aggtatagagacaggtggaatctcaaaagactcaagaggtggaggagggtgtttccattgaggaagtggtcctgcaagaagaagagttttaagaagagga |
35450104 |
T |
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| Q |
120 |
ccagctttcatcactgcctgcaaaagattacctttttcaggtagtggtctatttggtgttagtacttcaatcattgattgatcaataattggtgaagaaa |
219 |
Q |
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| T |
35450103 |
ccagctttcatcactgcctgcaaaagtttacctttttcaggtagtggtctatttggtgttagtacttcaatcattgattgatcaataattggtgaagaaa |
35450004 |
T |
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| Q |
220 |
caatgctttcttcacaatctgatgaagacaaagaaaaaccattgtttgagtcaattccttttcttgtaacttgttcatcttcaatgcttgaaactccgga |
319 |
Q |
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| T |
35450003 |
caatgctttcttcacaatctgaagaagacaaagaaaaaccattgtttgagtcaattccttttcttgtaacttgttcatcttcaatgcttgaaactccgga |
35449904 |
T |
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| Q |
320 |
aagtggagcattttgttgttgatggaaaactagcttttccaagagaagtctttcacatttttcttgtgcttcatctctttctctaat |
406 |
Q |
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| T |
35449903 |
aagtggatcattttgttgttgatggaaaactagcttttccaagagaagtctttgacatttttcttgtgcttcatctctttctctaat |
35449817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 29 - 160
Target Start/End: Original strand, 21010303 - 21010434
Alignment:
| Q |
29 |
gacaggtggaatctcaaaagactcaagaggtggaggagggtgtttccattgaggaagtggtcctgcaagaagaagagttttaagaagaggaccagctttc |
128 |
Q |
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| T |
21010303 |
gacaggtggaatctcaaaagactccaatggtggtggtggatgtctccattgaggtaatggtcctgcaagtaaaagggtctgaagcaaaggaccagctttc |
21010402 |
T |
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| Q |
129 |
atcactgcctgcaaaagattacctttttcagg |
160 |
Q |
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| T |
21010403 |
atcactgcttgtaaaagtttacctttttcagg |
21010434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 335 - 403
Target Start/End: Original strand, 21010633 - 21010701
Alignment:
| Q |
335 |
ttgttgatggaaaactagcttttccaagagaagtctttcacatttttcttgtgcttcatctctttctct |
403 |
Q |
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| T |
21010633 |
ttgttgttggaaaagtaacttttctaagaaaagtctttggcatttttcttgtgcttcatctctttctct |
21010701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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