View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14108_low_5 (Length: 383)
Name: NF14108_low_5
Description: NF14108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14108_low_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 41538923 - 41538541
Alignment:
| Q |
1 |
aaccagtgaagtataatacagataattagatagaacataatccacccaacgcggagaatatgcaccaccaccaccacttccaatttcagacacagcattt |
100 |
Q |
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| T |
41538923 |
aaccagtgaagtataatacagataattagatagaacataatccacccaacgcggcgaatatgcaccaccaccaccacttccaatttcagacacagcattt |
41538824 |
T |
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| Q |
101 |
tccattttttcaccgttcattgcatcaagctccgaaaactcatcacccttaatactccaaggctccaaataactaatccaaacataaaacacctgagaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41538823 |
tccattttttcaccgttcattgcatcaagctctgaaaactcatcacccttaatactccaaggctccaaataactaatccaaacataaaacacctgagaaa |
41538724 |
T |
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| Q |
201 |
cattcttaactgaagctgccatcggacaaaacaacaacgtcctcaacaaaaacctatacaaaggcctctgcaaacactgattccaacagccataacctaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41538723 |
cattcttaactgaagctgccatcggacaaaacaacaatgtcctcagcaaaaacctatacaaaggcctctgcaaacactgattccaacagccataacctaa |
41538624 |
T |
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| Q |
301 |
atccttattcttcgaaacctctaaacttctccatctaggactagaattgtaactataaccaaaatctccattctcacaagacg |
383 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41538623 |
atccttattcttcgaaacctctaaacttctccatctaggactagaattgtaactataaccaaaatctccattctcacaagacg |
41538541 |
T |
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