View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14108_low_6 (Length: 370)

Name: NF14108_low_6
Description: NF14108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14108_low_6
NF14108_low_6
[»] chr2 (30 HSPs)
chr2 (5-148)||(38022140-38022283)
chr2 (215-285)||(38022350-38022420)
chr2 (10-135)||(38034044-38034169)
chr2 (288-354)||(18018420-18018486)
chr2 (282-354)||(40357651-40357723)
chr2 (298-354)||(36567109-36567166)
chr2 (215-285)||(38034250-38034322)
chr2 (288-354)||(19383071-19383138)
chr2 (293-354)||(8990789-8990851)
chr2 (293-354)||(38294081-38294143)
chr2 (293-354)||(44020528-44020590)
chr2 (282-354)||(25955649-25955722)
chr2 (287-354)||(4042157-4042225)
chr2 (287-354)||(1726091-1726157)
chr2 (288-354)||(10165606-10165673)
chr2 (287-353)||(30312246-30312315)
chr2 (311-354)||(38023291-38023334)
chr2 (281-335)||(44137290-44137344)
chr2 (287-354)||(14008149-14008217)
chr2 (288-354)||(8555597-8555664)
chr2 (282-354)||(13765751-13765827)
chr2 (281-330)||(14008492-14008541)
chr2 (287-354)||(31550081-31550149)
chr2 (287-354)||(31899176-31899244)
chr2 (287-333)||(43334980-43335026)
chr2 (281-330)||(4003296-4003345)
chr2 (313-354)||(18562081-18562122)
chr2 (287-354)||(3038766-3038834)
chr2 (311-354)||(8410773-8410817)
chr2 (293-333)||(18781634-18781674)
[»] chr4 (28 HSPs)
chr4 (282-354)||(20534121-20534193)
chr4 (287-354)||(36151191-36151258)
chr4 (287-353)||(38366221-38366287)
chr4 (293-354)||(13270176-13270238)
chr4 (293-354)||(17622299-17622361)
chr4 (287-354)||(31530216-31530284)
chr4 (287-353)||(32060840-32060907)
chr4 (287-354)||(32648824-32648892)
chr4 (287-354)||(41844628-41844696)
chr4 (287-353)||(41363632-41363699)
chr4 (293-354)||(3126838-3126900)
chr4 (293-354)||(16535884-16535946)
chr4 (293-354)||(54806645-54806707)
chr4 (277-330)||(22845042-22845095)
chr4 (293-354)||(21295944-21296006)
chr4 (281-354)||(24280104-24280178)
chr4 (280-330)||(52594788-52594838)
chr4 (287-332)||(37756539-37756584)
chr4 (288-333)||(50643038-50643083)
chr4 (311-354)||(904390-904434)
chr4 (282-353)||(23709212-23709284)
chr4 (300-354)||(32948359-32948414)
chr4 (287-330)||(46177091-46177134)
chr4 (282-354)||(17873389-17873462)
chr4 (287-354)||(24291578-24291647)
chr4 (281-330)||(54806343-54806392)
chr4 (282-330)||(7182355-7182403)
chr4 (288-352)||(52594442-52594506)
[»] chr1 (34 HSPs)
chr1 (281-354)||(896311-896384)
chr1 (282-354)||(33991735-33991808)
chr1 (295-354)||(23871291-23871351)
chr1 (287-354)||(13255537-13255604)
chr1 (280-354)||(50247789-50247864)
chr1 (293-354)||(1688043-1688105)
chr1 (287-353)||(42161874-42161940)
chr1 (287-354)||(32300248-32300316)
chr1 (311-354)||(8156190-8156233)
chr1 (293-354)||(27500177-27500239)
chr1 (282-354)||(15464004-15464077)
chr1 (314-354)||(17675388-17675428)
chr1 (287-354)||(45565322-45565390)
chr1 (287-354)||(50402935-50403003)
chr1 (287-353)||(38795159-38795226)
chr1 (293-354)||(7401392-7401454)
chr1 (287-354)||(32299295-32299364)
chr1 (293-354)||(2175530-2175591)
chr1 (282-354)||(43571784-43571857)
chr1 (287-354)||(2925757-2925823)
chr1 (293-354)||(13061222-13061284)
chr1 (281-354)||(26940772-26940846)
chr1 (287-350)||(26756976-26757039)
chr1 (287-330)||(9595779-9595822)
chr1 (287-330)||(39179270-39179313)
chr1 (287-354)||(47905511-47905577)
chr1 (281-354)||(1523788-1523862)
chr1 (293-353)||(47206249-47206311)
chr1 (314-351)||(14153310-14153347)
chr1 (314-354)||(17688536-17688577)
chr1 (287-324)||(39125266-39125303)
chr1 (287-354)||(39508961-39509029)
chr1 (298-354)||(42488460-42488514)
chr1 (287-354)||(50476721-50476789)
[»] chr5 (13 HSPs)
chr5 (282-353)||(10295680-10295752)
chr5 (282-354)||(25598584-25598657)
chr5 (280-354)||(38120008-38120083)
chr5 (293-353)||(25027116-25027177)
chr5 (287-354)||(1658370-1658437)
chr5 (281-354)||(17093090-17093164)
chr5 (287-354)||(33718374-33718442)
chr5 (279-354)||(4648795-4648875)
chr5 (288-354)||(35701596-35701663)
chr5 (293-344)||(38302186-38302238)
chr5 (287-333)||(21916124-21916170)
chr5 (314-352)||(2021176-2021214)
chr5 (293-346)||(27479993-27480047)
[»] chr3 (26 HSPs)
chr3 (287-354)||(36796618-36796686)
chr3 (282-354)||(39499393-39499464)
chr3 (282-354)||(47789261-47789334)
chr3 (293-354)||(49682828-49682889)
chr3 (287-354)||(49861029-49861097)
chr3 (287-353)||(44411974-44412041)
chr3 (287-354)||(30121342-30121410)
chr3 (287-354)||(47434114-47434181)
chr3 (287-354)||(43237483-43237551)
chr3 (287-354)||(55439778-55439846)
chr3 (287-354)||(55445102-55445170)
chr3 (293-353)||(47714496-47714560)
chr3 (287-354)||(3042948-3043016)
chr3 (287-354)||(30131706-30131774)
chr3 (287-354)||(38515430-38515498)
chr3 (295-354)||(41961805-41961865)
chr3 (282-343)||(3537410-3537472)
chr3 (282-332)||(39115121-39115171)
chr3 (293-353)||(34306791-34306852)
chr3 (287-332)||(52620655-52620700)
chr3 (314-352)||(25428863-25428901)
chr3 (287-329)||(38456489-38456531)
chr3 (314-354)||(2420852-2420893)
chr3 (311-352)||(7661234-7661275)
chr3 (287-324)||(47789616-47789653)
chr3 (314-354)||(38593149-38593189)
[»] scaffold1562 (1 HSPs)
scaffold1562 (288-354)||(334-400)
[»] scaffold1158 (1 HSPs)
scaffold1158 (288-354)||(2193-2259)
[»] scaffold0028 (1 HSPs)
scaffold0028 (282-354)||(35270-35343)
[»] chr8 (14 HSPs)
chr8 (287-354)||(36906382-36906450)
chr8 (287-354)||(34148400-34148467)
chr8 (301-354)||(34272708-34272762)
chr8 (293-353)||(3404399-3404460)
chr8 (287-352)||(33230866-33230932)
chr8 (287-353)||(37659353-37659418)
chr8 (287-354)||(1941870-1941938)
chr8 (287-354)||(36102710-36102778)
chr8 (293-344)||(1111063-1111114)
chr8 (293-351)||(34349911-34349970)
chr8 (293-354)||(25033573-25033635)
chr8 (293-349)||(7778-7835)
chr8 (282-330)||(1111290-1111338)
chr8 (287-328)||(27030031-27030072)
[»] chr7 (20 HSPs)
chr7 (287-354)||(7666984-7667052)
chr7 (287-354)||(3658331-3658398)
chr7 (287-355)||(47275821-47275890)
chr7 (287-354)||(28437361-28437429)
chr7 (287-354)||(34651873-34651941)
chr7 (287-354)||(43189050-43189118)
chr7 (293-354)||(33406418-33406480)
chr7 (287-353)||(33113463-33113525)
chr7 (299-354)||(5967885-5967940)
chr7 (287-354)||(38235987-38236053)
chr7 (313-354)||(43665015-43665057)
chr7 (280-349)||(41002065-41002134)
chr7 (298-354)||(42620183-42620240)
chr7 (287-335)||(33872213-33872261)
chr7 (293-332)||(44690079-44690118)
chr7 (301-354)||(19644488-19644542)
chr7 (293-354)||(44720274-44720333)
chr7 (277-330)||(3658675-3658728)
chr7 (293-330)||(35902075-35902112)
chr7 (282-330)||(7667329-7667377)
[»] chr6 (11 HSPs)
chr6 (282-354)||(29241648-29241721)
chr6 (287-354)||(4909700-4909768)
chr6 (287-354)||(5825525-5825593)
chr6 (293-353)||(26480957-26481018)
chr6 (293-354)||(24735075-24735137)
chr6 (293-354)||(34914820-34914882)
chr6 (287-354)||(31345189-31345257)
chr6 (287-354)||(23094949-23095016)
chr6 (299-353)||(1029486-1029541)
chr6 (287-353)||(26574215-26574282)
chr6 (281-329)||(2365762-2365810)
[»] scaffold0717 (1 HSPs)
scaffold0717 (282-352)||(1774-1845)
[»] scaffold0952 (1 HSPs)
scaffold0952 (282-354)||(3484-3557)
[»] scaffold0059 (2 HSPs)
scaffold0059 (313-354)||(67960-68001)
scaffold0059 (313-354)||(76065-76106)
[»] scaffold0636 (1 HSPs)
scaffold0636 (287-354)||(8584-8652)
[»] scaffold0013 (1 HSPs)
scaffold0013 (314-354)||(107657-107697)
[»] scaffold0036 (1 HSPs)
scaffold0036 (287-330)||(82669-82712)


Alignment Details
Target: chr2 (Bit Score: 136; Significance: 7e-71; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 5 - 148
Target Start/End: Original strand, 38022140 - 38022283
Alignment:
Q  5 gcaaaggaagatccaatcaaacacaagagtttttggtcacgattaattgagtttgaaacaagtgaatgaatcatcctctttattgctttggaacttgaag 104  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38022140 gcaaaggaagatccaatcaaacacaagagtttttgatcaagattaattgagtttgaaacaagtgaatgaatcatcctctttattgctttggaacttgaag 38022239  T
Q  105 tggtcttggaagtgattcaatttttgcatggatagaaatttgtg 148  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  38022240 tggtcttggaagtgattcaatttttgcatggatagaaatttgtg 38022283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 215 - 285
Target Start/End: Original strand, 38022350 - 38022420
Alignment:
Q  215 aagcttttattcatggatttatatagagtttaatagcttatagaagaacatgagatttactaaaattctta 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38022350 aagcttttattcatggatttatatagagtttaatagcttatagaagaacatgagatttactaaaattctta 38022420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 10 - 135
Target Start/End: Original strand, 38034044 - 38034169
Alignment:
Q  10 ggaagatccaatcaaacacaagagtttttggtcacgattaattgagtttgaaacaagtgaatgaatcatcctctttattgctttggaacttgaagtggtc 109  Q
    ||||||||| ||||| ||||| |||||||  ||| |||||||||||| | ||||||||||| |||||||||  ||| || ||||||| | ||||||||||    
T  38034044 ggaagatcctatcaagcacaaaagttttttatcaagattaattgagtctaaaacaagtgaaagaatcatcccttttgtttctttggatcatgaagtggtc 38034143  T
Q  110 ttggaagtgattcaatttttgcatgg 135  Q
    ||||||||||||||||||||||||||    
T  38034144 ttggaagtgattcaatttttgcatgg 38034169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 288 - 354
Target Start/End: Original strand, 18018420 - 18018486
Alignment:
Q  288 ctttatttgggagtttggagggaaagggaggggagggctttgggggttgaaaatatatagaaaaatg 354  Q
    |||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  18018420 ctttgtttgggagtttggaggggaagggatgggagggctttgggggttgaaaatatatagaaaaatg 18018486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 282 - 354
Target Start/End: Complemental strand, 40357723 - 40357651
Alignment:
Q  282 cttacgctttatttgggagtttggagggaaagggaggggagggctttgggggttgaaaatatatagaaaaatg 354  Q
    |||| ||||| ||||| ||||||||||| |||||||||||| | |||||||||||||||||||||||||||||    
T  40357723 cttaggctttgtttggaagtttggaggggaagggaggggagagttttgggggttgaaaatatatagaaaaatg 40357651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 298 - 354
Target Start/End: Original strand, 36567109 - 36567166
Alignment:
Q  298 gagtttggagggaaagggaggggagggcttt-gggggttgaaaatatatagaaaaatg 354  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  36567109 gagtttggaggggaagggaggggagggctttggggggttgaaaatatatagaaaaatg 36567166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 215 - 285
Target Start/End: Original strand, 38034250 - 38034322
Alignment:
Q  215 aagcttttattcatggatttatatagag--tttaatagcttatagaagaacatgagatttactaaaattctta 285  Q
    ||||||||||||||||||||||||| ||  |||||||||||||| || ||| |||||||||||||||||||||    
T  38034250 aagcttttattcatggatttatatatagaatttaatagcttatacaacaacgtgagatttactaaaattctta 38034322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 288 - 354
Target Start/End: Complemental strand, 19383138 - 19383071
Alignment:
Q  288 ctttatttgggagtttggagggaaagggaggggagggctttg-ggggttgaaaatatatagaaaaatg 354  Q
    |||| ||||||||||||||| | |||||||| |||||||||| |||||||||||||||||||||||||    
T  19383138 ctttgtttgggagtttggagaggaagggaggagagggctttggggggttgaaaatatatagaaaaatg 19383071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 293 - 354
Target Start/End: Original strand, 8990789 - 8990851
Alignment:
Q  293 tttgggagtttggagggaaagggaggggagggcttt-gggggttgaaaatatatagaaaaatg 354  Q
    ||||||||||||||||| |||| ||||||||||||| |||||||| |||||||||||||||||    
T  8990789 tttgggagtttggaggggaaggaaggggagggctttggggggttggaaatatatagaaaaatg 8990851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 293 - 354
Target Start/End: Complemental strand, 38294143 - 38294081
Alignment:
Q  293 tttgggagtttggagggaaagggaggggagggctttgg-gggttgaaaatatatagaaaaatg 354  Q
    ||||||||||||||||| ||||||||||||| |||||| || |||||||||||||||||||||    
T  38294143 tttgggagtttggaggggaagggaggggaggactttggaggattgaaaatatatagaaaaatg 38294081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 293 - 354
Target Start/End: Complemental strand, 44020590 - 44020528
Alignment:
Q  293 tttgggagtttggagggaaagggaggggagggcttt-gggggttgaaaatatatagaaaaatg 354  Q
    ||||||||||||||||| |||||||| ||||| ||| ||||||||||||||||||||||||||    
T  44020590 tttgggagtttggaggggaagggaggagagggttttggggggttgaaaatatatagaaaaatg 44020528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 282 - 354
Target Start/End: Original strand, 25955649 - 25955722
Alignment:
Q  282 cttacgctttatttgggagtttggagggaaagggaggggagggctttgg-gggttgaaaatatatagaaaaatg 354  Q
    |||| ||||| ||||||||||||||||| || | ||||||||||||||| |||||| |||||||||||||||||    
T  25955649 cttaggctttgtttgggagtttggaggggaaagaaggggagggctttggtgggttggaaatatatagaaaaatg 25955722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 287 - 354
Target Start/End: Complemental strand, 4042225 - 4042157
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggctttggggg-ttgaaaatatatagaaaaatg 354  Q
    ||||| |||||||| |||||||| ||| |||||||||| |||||||| |||||||||||||||||||||    
T  4042225 gctttgtttgggagcttggaggggaagagaggggagggttttggggggttgaaaatatatagaaaaatg 4042157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 287 - 354
Target Start/End: Complemental strand, 1726157 - 1726091
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggctttgggggttgaaaatatatagaaaaatg 354  Q
    ||||| |||| |||||||||||  ||||||||||||||| |||||||||| |||||||||||||||||    
T  1726157 gctttgtttgagagtttggaggagaagggaggggagggc-ttgggggttggaaatatatagaaaaatg 1726091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 288 - 354
Target Start/End: Complemental strand, 10165673 - 10165606
Alignment:
Q  288 ctttatttgggagtttggagggaaagggaggggagggctttg-ggggttgaaaatatatagaaaaatg 354  Q
    |||| ||||| ||||||||||| ||||||| ||||||||||| ||||||| |||||||||||||||||    
T  10165673 ctttgtttggaagtttggaggggaagggagaggagggctttggggggttggaaatatatagaaaaatg 10165606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 287 - 353
Target Start/End: Original strand, 30312246 - 30312315
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggaggg---ctttgggggttgaaaatatatagaaaaat 353  Q
    ||||| |||| |||||||||||| ||| ||||||||||   |||||||||||||||||||||||||||||    
T  30312246 gctttgtttgagagtttggaggggaagagaggggagggaggctttgggggttgaaaatatatagaaaaat 30312315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 311 - 354
Target Start/End: Original strand, 38023291 - 38023334
Alignment:
Q  311 aagggaggggagggctttgggggttgaaaatatatagaaaaatg 354  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  38023291 aagggaggggagggttttgggggttgaaaatatatagaaaaatg 38023334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 281 - 335
Target Start/End: Complemental strand, 44137344 - 44137290
Alignment:
Q  281 tcttacgctttatttgggagtttggagggaaagggaggggagggctttgggggtt 335  Q
    ||||| ||||| ||||||||||||||||| |||||| ||||||||||||||||||    
T  44137344 tcttaggctttgtttgggagtttggaggggaagggaagggagggctttgggggtt 44137290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 287 - 354
Target Start/End: Original strand, 14008149 - 14008217
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggcttt-gggggttgaaaatatatagaaaaatg 354  Q
    ||||| ||||||||||||||||| ||||||||||| | |||| |||||||  |||||||||||||||||    
T  14008149 gctttgtttgggagtttggaggggaagggaggggatgactttggggggttcgaaatatatagaaaaatg 14008217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 288 - 354
Target Start/End: Original strand, 8555597 - 8555664
Alignment:
Q  288 ctttatttgggagtttggagggaaagggaggggaggg-ctttgggggttgaaaatatatagaaaaatg 354  Q
    |||| |||||||||||||||||||||||| || ||||  || ||||||| ||||||||||||||||||    
T  8555597 ctttgtttgggagtttggagggaaagggatggaagggtgttggggggttaaaaatatatagaaaaatg 8555664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 282 - 354
Target Start/End: Original strand, 13765751 - 13765827
Alignment:
Q  282 cttacgctttatttgggagtttggagggaaagggaggggagggctttgggggt----tgaaaatatatagaaaaatg 354  Q
    |||| ||||| ||||||||||||||||  || ||||||||||||||||||||     ||||||||||||||||||||    
T  13765751 cttaggctttgtttgggagtttggaggagaaaggaggggagggctttggggggggggtgaaaatatatagaaaaatg 13765827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 330
Target Start/End: Complemental strand, 14008541 - 14008492
Alignment:
Q  281 tcttacgctttatttgggagtttggagggaaagggaggggagggctttgg 330  Q
    ||||| ||||| ||||||||||||||||| |||||||||||||| |||||    
T  14008541 tcttaggctttctttgggagtttggaggggaagggaggggagggttttgg 14008492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 354
Target Start/End: Original strand, 31550081 - 31550149
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggctttg-ggggttgaaaatatatagaaaaatg 354  Q
    ||||| ||||||| ||||||||| |||||||| ||||  |||| ||||||| |||||||||||||||||    
T  31550081 gctttgtttgggaatttggaggggaagggaggagaggattttgaggggttggaaatatatagaaaaatg 31550149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 354
Target Start/End: Original strand, 31899176 - 31899244
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggcttt-gggggttgaaaatatatagaaaaatg 354  Q
    ||||| ||||||||||||||||| ||||||| |||   |||| |||||||| |||||||||||||||||    
T  31899176 gctttgtttgggagtttggaggggaagggagaggaaaactttggggggttggaaatatatagaaaaatg 31899244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 333
Target Start/End: Complemental strand, 43335026 - 43334980
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggctttggggg 333  Q
    ||||| |||||||||||| |||||||| ||||||||||||| |||||    
T  43335026 gctttgtttgggagtttgtagggaaagagaggggagggcttcggggg 43334980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 330
Target Start/End: Original strand, 4003296 - 4003345
Alignment:
Q  281 tcttacgctttatttgggagtttggagggaaagggaggggagggctttgg 330  Q
    ||||| ||||| |||| |||||||||| | ||||||||||||||||||||    
T  4003296 tcttaggctttgtttgtgagtttggagtggaagggaggggagggctttgg 4003345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 354
Target Start/End: Complemental strand, 18562122 - 18562081
Alignment:
Q  313 gggaggggagggctttgggggttgaaaatatatagaaaaatg 354  Q
    |||| ||||||| ||||||||||| |||||||||||||||||    
T  18562122 gggaagggagggttttgggggttggaaatatatagaaaaatg 18562081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 354
Target Start/End: Original strand, 3038766 - 3038834
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggctttgggggtt-gaaaatatatagaaaaatg 354  Q
    ||||| |||||||| ||| |||| |||| | || |||||||||| |||| |||||||||||||||||||    
T  3038766 gctttgtttgggagcttgaaggggaaggaaaggaagggctttggcggtttgaaaatatatagaaaaatg 3038834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 354
Target Start/End: Original strand, 8410773 - 8410817
Alignment:
Q  311 aagggaggggagggctttggggg-ttgaaaatatatagaaaaatg 354  Q
    |||||||||||||| |||||||| ||| |||||||||||||||||    
T  8410773 aagggaggggagggttttggggggttggaaatatatagaaaaatg 8410817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 333
Target Start/End: Complemental strand, 18781674 - 18781634
Alignment:
Q  293 tttgggagtttggagggaaagggaggggagggctttggggg 333  Q
    |||| |||||||||||| ||||||||||||||||| |||||    
T  18781674 tttgagagtttggaggggaagggaggggagggcttcggggg 18781634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 282 - 354
Target Start/End: Complemental strand, 20534193 - 20534121
Alignment:
Q  282 cttacgctttatttgggagtttggagggaaagggaggggagggctttgggggttgaaaatatatagaaaaatg 354  Q
    |||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  20534193 cttaggctttgtttgggagtttggaggggaagggaggggagggctttgggggttggaaatatatagaaaaatg 20534121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 287 - 354
Target Start/End: Original strand, 36151191 - 36151258
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggctttgggggttgaaaatatatagaaaaatg 354  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||  ||||||||||||||||||||||    
T  36151191 gctttatttgggagtttggaggggaagggaggggaggactttggaagttgaaaatatatagaaaaatg 36151258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 287 - 353
Target Start/End: Complemental strand, 38366287 - 38366221
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggctttgggggttgaaaatatatagaaaaat 353  Q
    ||||| ||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||    
T  38366287 gctttgtttgggagtttggagaggaagggaggggagggctttgggggttggaaatatatagaaaaat 38366221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 293 - 354
Target Start/End: Complemental strand, 13270238 - 13270176
Alignment:
Q  293 tttgggagtttggagggaaagggaggggagggctttg-ggggttgaaaatatatagaaaaatg 354  Q
    |||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||    
T  13270238 tttgggagtttggagggaaagggaggagagggctttggggggttggaaatatatagaaaaatg 13270176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 293 - 354
Target Start/End: Original strand, 17622299 - 17622361
Alignment:
Q  293 tttgggagtttggagggaaagggaggggagggcttt-gggggttgaaaatatatagaaaaatg 354  Q
    ||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||    
T  17622299 tttgggagtttggaggggaagggaggggagggctttggggggttggaaatatatagaaaaatg 17622361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 287 - 354
Target Start/End: Complemental strand, 31530284 - 31530216
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggctttg-ggggttgaaaatatatagaaaaatg 354  Q
    ||||| |||| |||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||    
T  31530284 gctttgtttgagagtttggaggggaagggaggggagggctttggggggttaaaaatatatagaaaaatg 31530216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 287 - 353
Target Start/End: Complemental strand, 32060907 - 32060840
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggctttg-ggggttgaaaatatatagaaaaat 353  Q
    ||||| ||||||||||||||| | ||||||||||||||||||| ||||||| ||||||||||||||||    
T  32060907 gctttgtttgggagtttggagtggaagggaggggagggctttggggggttggaaatatatagaaaaat 32060840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 287 - 354
Target Start/End: Original strand, 32648824 - 32648892
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggcttt-gggggttgaaaatatatagaaaaatg 354  Q
    ||||| |||||| |||||||||| |||||||||||||| ||| |||||||| |||||||||||||||||    
T  32648824 gctttgtttgggggtttggaggggaagggaggggagggttttggggggttggaaatatatagaaaaatg 32648892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 287 - 354
Target Start/End: Complemental strand, 41844696 - 41844628
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggcttt-gggggttgaaaatatatagaaaaatg 354  Q
    ||||| ||||||||||||||||| ||||||||||||| |||| |||||||| ||| |||||||||||||    
T  41844696 gctttgtttgggagtttggaggggaagggaggggaggactttggggggttggaaacatatagaaaaatg 41844628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 287 - 353
Target Start/End: Original strand, 41363632 - 41363699
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggcttt-gggggttgaaaatatatagaaaaat 353  Q
    ||||| |||| |||||||||||  |||||||||||||||||| ||||||| |||||||||||||||||    
T  41363632 gctttgtttgagagtttggaggcgaagggaggggagggctttggggggttaaaaatatatagaaaaat 41363699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 293 - 354
Target Start/End: Original strand, 3126838 - 3126900
Alignment:
Q  293 tttgggagtttggagggaaagggaggggagggcttt-gggggttgaaaatatatagaaaaatg 354  Q
    ||||||||||||||||| |||||| ||||| ||||| |||||||||||||||||| |||||||    
T  3126838 tttgggagtttggaggggaagggaagggagagctttggggggttgaaaatatatacaaaaatg 3126900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 293 - 354
Target Start/End: Complemental strand, 16535946 - 16535884
Alignment:
Q  293 tttgggagtttggagggaaagggaggggagggctttgggg-gttgaaaatatatagaaaaatg 354  Q
    |||||||||||||| || ||||||||||||||||||||||  ||| |||||||||||||||||    
T  16535946 tttgggagtttggatgggaagggaggggagggctttggggtattggaaatatatagaaaaatg 16535884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 293 - 354
Target Start/End: Complemental strand, 54806707 - 54806645
Alignment:
Q  293 tttgggagtttggagggaaagggaggggagggctttgg-gggttgaaaatatatagaaaaatg 354  Q
    ||||||||||||||||  ||||||||||||| |||||| ||||| ||||||||||||||||||    
T  54806707 tttgggagtttggaggagaagggaggggaggactttggagggttaaaaatatatagaaaaatg 54806645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 277 - 330
Target Start/End: Original strand, 22845042 - 22845095
Alignment:
Q  277 aaattcttacgctttatttgggagtttggagggaaagggaggggagggctttgg 330  Q
    |||| |||| ||||| ||||||||||||||||| ||||||||||||||||||||    
T  22845042 aaatacttaggctttgtttgggagtttggaggggaagggaggggagggctttgg 22845095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 354
Target Start/End: Original strand, 21295944 - 21296006
Alignment:
Q  293 tttgggagtttggagggaaagggaggggagggctttggg-ggttgaaaatatatagaaaaatg 354  Q
    ||||||||||||||||| ||||||||  |||| |||||| ||||| |||||||||||||||||    
T  21295944 tttgggagtttggaggggaagggaggttagggttttgggaggttggaaatatatagaaaaatg 21296006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 354
Target Start/End: Complemental strand, 24280178 - 24280104
Alignment:
Q  281 tcttacgctttatttgggagtttggagggaaagggaggggagggctttgggg-gttgaaaatatatagaaaaatg 354  Q
    ||||| ||||| ||||||||||| ||||| |||||||||||  |||||||||  ||| |||||||||||||||||    
T  24280178 tcttaggctttgtttgggagtttcgaggggaagggaggggaaagctttggggatttggaaatatatagaaaaatg 24280104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 330
Target Start/End: Complemental strand, 52594838 - 52594788
Alignment:
Q  280 ttcttacgctttatttgggagtttggagggaaagggaggggagggctttgg 330  Q
    |||||| ||||| ||||||||||||||||||| |||||||||||| |||||    
T  52594838 ttcttaagctttgtttgggagtttggagggaaggggaggggagggttttgg 52594788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 287 - 332
Target Start/End: Original strand, 37756539 - 37756584
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggctttgggg 332  Q
    ||||| ||||| ||||||||||| ||||||||||||||||||||||    
T  37756539 gctttgtttggaagtttggaggggaagggaggggagggctttgggg 37756584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 288 - 333
Target Start/End: Complemental strand, 50643083 - 50643038
Alignment:
Q  288 ctttatttgggagtttggagggaaagggaggggagggctttggggg 333  Q
    |||| ||||||||||||||||| |||||| ||||||||||||||||    
T  50643083 ctttgtttgggagtttggaggggaagggatgggagggctttggggg 50643038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 354
Target Start/End: Complemental strand, 904434 - 904390
Alignment:
Q  311 aagggaggggagggctttg-ggggttgaaaatatatagaaaaatg 354  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||    
T  904434 aagggaggggagggctttggggggttggaaatatatagaaaaatg 904390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 353
Target Start/End: Complemental strand, 23709284 - 23709212
Alignment:
Q  282 cttacgctttatttgggagtttggagggaaagggaggggagggcttt-gggggttgaaaatatatagaaaaat 353  Q
    |||| ||||| ||||||||||| || ||||||| | |||||||||||  ||||||| ||||||||||||||||    
T  23709284 cttaggctttgtttgggagtttagaaggaaaggaatgggagggctttaaggggttggaaatatatagaaaaat 23709212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 300 - 354
Target Start/End: Original strand, 32948359 - 32948414
Alignment:
Q  300 gtttggagggaaagggaggggagggctttgggg-gttgaaaatatatagaaaaatg 354  Q
    |||||||||| |||||||| ||| | ||||||| ||||||||||||||||||||||    
T  32948359 gtttggaggggaagggaggagagagttttggggggttgaaaatatatagaaaaatg 32948414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 287 - 330
Target Start/End: Complemental strand, 46177134 - 46177091
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggctttgg 330  Q
    ||||| |||| ||||||||||||||||||||||||||| |||||    
T  46177134 gctttgtttgtgagtttggagggaaagggaggggagggttttgg 46177091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 354
Target Start/End: Complemental strand, 17873462 - 17873389
Alignment:
Q  282 cttacgctttatttgggagtttggagggaaagggaggggagggctttggggg-ttgaaaatatatagaaaaatg 354  Q
    |||| ||||| ||||| ||||||||||| ||||||| ||||   |||||||| ||| |||||||||||||||||    
T  17873462 cttaggctttgtttggaagtttggaggggaagggagaggagaattttggggggttggaaatatatagaaaaatg 17873389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 354
Target Start/End: Complemental strand, 24291647 - 24291578
Alignment:
Q  287 gctttatttgggagtttggagggaaagggagggg-agggctttggggg-ttgaaaatatatagaaaaatg 354  Q
    ||||| ||||| ||||||||||  |||||||||| || |||||||||| ||| |||||||||||||||||    
T  24291647 gctttgtttggaagtttggaggtgaagggaggggaagagctttgggggtttggaaatatatagaaaaatg 24291578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 330
Target Start/End: Original strand, 54806343 - 54806392
Alignment:
Q  281 tcttacgctttatttgggagtttggagggaaagggaggggagggctttgg 330  Q
    ||||| ||||| ||||||||||||||| | |||||||||||||| |||||    
T  54806343 tcttaggctttgtttgggagtttggagaggaagggaggggagggttttgg 54806392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 330
Target Start/End: Complemental strand, 7182403 - 7182355
Alignment:
Q  282 cttacgctttatttgggagtttggagggaaagggaggggagggctttgg 330  Q
    |||| ||||| ||||||||||||||||| | |||||||||||| |||||    
T  7182403 cttaggctttgtttgggagtttggaggggaggggaggggagggttttgg 7182355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 352
Target Start/End: Original strand, 52594442 - 52594506
Alignment:
Q  288 ctttatttgggagtttggagggaaagggaggggagggctttgggggttgaaaatatatagaaaaa 352  Q
    |||| |||||||||||| |||| || || ||||||| |||| | ||||||||||||||| |||||    
T  52594442 ctttgtttgggagtttgaaggggaaagggggggaggactttcgaggttgaaaatatataaaaaaa 52594506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 281 - 354
Target Start/End: Original strand, 896311 - 896384
Alignment:
Q  281 tcttacgctttatttgggagtttggagggaaagggaggggagggctttgggggttgaaaatatatagaaaaatg 354  Q
    ||||| ||||| ||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||    
T  896311 tcttaggctttgtttgggagtttggaggagaagggaggggagggctttgggggttggaaatatatagaaaaatg 896384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 282 - 354
Target Start/End: Complemental strand, 33991808 - 33991735
Alignment:
Q  282 cttacgctttatttgggagtttggagggaaagggaggggagggctttg-ggggttgaaaatatatagaaaaatg 354  Q
    |||| ||||| ||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||    
T  33991808 cttaggctttgtttgggagtttggaggggaagggaggggagggctttggggggttggaaatatatagaaaaatg 33991735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 295 - 354
Target Start/End: Original strand, 23871291 - 23871351
Alignment:
Q  295 tgggagtttggagggaaagggaggggagggcttt-gggggttgaaaatatatagaaaaatg 354  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  23871291 tgggagtttggagggaaagggaggggagggctttggggggttggaaatatatagaaaaatg 23871351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 287 - 354
Target Start/End: Complemental strand, 13255604 - 13255537
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggctttgggggttgaaaatatatagaaaaatg 354  Q
    ||||| || |||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||    
T  13255604 gctttgttggggagtttggaggagaagggaggggagggctttgggggttggaaatatatagaaaaatg 13255537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 280 - 354
Target Start/End: Complemental strand, 50247864 - 50247789
Alignment:
Q  280 ttcttacgctttatttgggagtttggagggaaagggaggggagggctttggg-ggttgaaaatatatagaaaaatg 354  Q
    |||||| ||||| ||||||||||||||||| |||||||||||||| |||||| ||||| |||||||||||||||||    
T  50247864 ttcttaggctttctttgggagtttggaggggaagggaggggagggttttgggtggttggaaatatatagaaaaatg 50247789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 293 - 354
Target Start/End: Original strand, 1688043 - 1688105
Alignment:
Q  293 tttgggagtttggagggaaagggaggggagggcttt-gggggttgaaaatatatagaaaaatg 354  Q
    ||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||    
T  1688043 tttgggagtttggaggggaagggaggggagggctttggggggttggaaatatatagaaaaatg 1688105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 287 - 353
Target Start/End: Original strand, 42161874 - 42161940
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggctttgggggttgaaaatatatagaaaaat 353  Q
    ||||| ||||||||||||||||| ||| |||||||||||||||||||||| ||||||||| ||||||    
T  42161874 gctttgtttgggagtttggaggggaagagaggggagggctttgggggttggaaatatataaaaaaat 42161940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 287 - 354
Target Start/End: Complemental strand, 32300316 - 32300248
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggctttggg-ggttgaaaatatatagaaaaatg 354  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||| ||||| |||||| ||||||||||    
T  32300316 gctttgtttgggagtttggaggggaagggaggggagggctttgggaggttggaaatatgtagaaaaatg 32300248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 311 - 354
Target Start/End: Original strand, 8156190 - 8156233
Alignment:
Q  311 aagggaggggagggctttgggggttgaaaatatatagaaaaatg 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  8156190 aagggaggggagggctttgggggttgaaaatatatagaaaaatg 8156233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 293 - 354
Target Start/End: Complemental strand, 27500239 - 27500177
Alignment:
Q  293 tttgggagtttggagggaaagggaggggagggctttg-ggggttgaaaatatatagaaaaatg 354  Q
    ||||||||||||||| | ||||||||||||||||||| ||||||| |||||||||||||||||    
T  27500239 tttgggagtttggagaggaagggaggggagggctttggggggttggaaatatatagaaaaatg 27500177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 282 - 354
Target Start/End: Complemental strand, 15464077 - 15464004
Alignment:
Q  282 cttacgctttatttgggagtttggagggaaagggaggggagggcttt-gggggttgaaaatatatagaaaaatg 354  Q
    |||| ||||| |||||||||||| |||| |||||||||||||| ||| |||||||| |||||||||||||||||    
T  15464077 cttaggctttgtttgggagtttgaaggggaagggaggggagggttttggggggttggaaatatatagaaaaatg 15464004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 314 - 354
Target Start/End: Complemental strand, 17675428 - 17675388
Alignment:
Q  314 ggaggggagggctttgggggttgaaaatatatagaaaaatg 354  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  17675428 ggaggggagggctttgggggttgaaaatatatagaaaaatg 17675388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 287 - 354
Target Start/End: Complemental strand, 45565390 - 45565322
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggctttg-ggggttgaaaatatatagaaaaatg 354  Q
    ||||| |||| |||||||||||| |||||||||||||| |||| ||||||| |||||||||||||||||    
T  45565390 gctttgtttgcgagtttggaggggaagggaggggagggttttgaggggttggaaatatatagaaaaatg 45565322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 287 - 354
Target Start/End: Complemental strand, 50403003 - 50402935
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggctttgg-gggttgaaaatatatagaaaaatg 354  Q
    ||||| ||||||||||||||||| ||||||| |||||||||||| || ||| |||||||||||||||||    
T  50403003 gctttgtttgggagtttggagggtaagggagaggagggctttggaggattggaaatatatagaaaaatg 50402935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 287 - 353
Target Start/End: Complemental strand, 38795226 - 38795159
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggctttgg-gggttgaaaatatatagaaaaat 353  Q
    ||||| ||||||||||||||||| ||||||||||||  |||||| |||||| ||||||||||||||||    
T  38795226 gctttgtttgggagtttggaggggaagggaggggagaactttggtgggttggaaatatatagaaaaat 38795159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 293 - 354
Target Start/End: Original strand, 7401392 - 7401454
Alignment:
Q  293 tttgggagtttggagggaaagggaggggagggcttt-gggggttgaaaatatatagaaaaatg 354  Q
    ||||||||||||||||| ||| |||||||||||||| |||||||  |||||||||||||||||    
T  7401392 tttgggagtttggaggggaagagaggggagggctttggggggttagaaatatatagaaaaatg 7401454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 287 - 354
Target Start/End: Complemental strand, 32299364 - 32299295
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggcttt--gggggttgaaaatatatagaaaaatg 354  Q
    ||||| ||||||||||||||||| ||||||||||||||||||  || ||||| |||||| ||||||||||    
T  32299364 gctttgtttgggagtttggaggggaagggaggggagggcttttgggaggttggaaatatgtagaaaaatg 32299295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 293 - 354
Target Start/End: Complemental strand, 2175591 - 2175530
Alignment:
Q  293 tttgggagtttggagggaaagggaggggagggctttgggggttgaaaatatatagaaaaatg 354  Q
    |||||||||||||||||  |||||||| ||| |||||||||||  |||||||||||||||||    
T  2175591 tttgggagtttggaggggtagggagggaaggactttgggggttcgaaatatatagaaaaatg 2175530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 282 - 354
Target Start/End: Original strand, 43571784 - 43571857
Alignment:
Q  282 cttacgctttatttgggagtttggagggaaagggaggggagggcttt-gggggttgaaaatatatagaaaaatg 354  Q
    |||| ||||| ||||||||||||||| | ||||||||||| |||||| |||||||| ||||||||| |||||||    
T  43571784 cttaggctttgtttgggagtttggagaggaagggaggggaaggctttggggggttggaaatatatacaaaaatg 43571857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 287 - 354
Target Start/End: Original strand, 2925757 - 2925823
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggctttgggggttgaaaatatatagaaaaatg 354  Q
    ||||| |||||||||||| |||| |||||||||||| ||||| | ||||| |||||||||||||||||    
T  2925757 gctttgtttgggagtttgaaggggaagggaggggagagcttt-gaggttggaaatatatagaaaaatg 2925823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 354
Target Start/End: Original strand, 13061222 - 13061284
Alignment:
Q  293 tttgggagtttggagggaaagggaggggagggcttt-gggggttgaaaatatatagaaaaatg 354  Q
    ||||| ||||||||||| |||||||||||||| ||| |||||||| ||||||||||| |||||    
T  13061222 tttggaagtttggaggggaagggaggggagggttttggggggttggaaatatatagagaaatg 13061284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 354
Target Start/End: Complemental strand, 26940846 - 26940772
Alignment:
Q  281 tcttacgctttatttgggagtttggagggaaagggaggggagggcttt-gggggttgaaaatatatagaaaaatg 354  Q
    ||||| ||||| ||||| ||||||||||| |||| ||||||||  ||| |||||||| |||||||||||||||||    
T  26940846 tcttaggctttgtttggaagtttggaggggaaggaaggggaggattttggggggttggaaatatatagaaaaatg 26940772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 350
Target Start/End: Original strand, 26756976 - 26757039
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggctttgggg-gttgaaaatatatagaaa 350  Q
    ||||||||||||||||| ||||| |||||| ||||||||||||||| |||| |||||| ||||||    
T  26756976 gctttatttgggagtttagaggg-aagggaagggagggctttggggagttggaaatatgtagaaa 26757039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 287 - 330
Target Start/End: Complemental strand, 9595822 - 9595779
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggctttgg 330  Q
    ||||| ||||||||||||||||| |||||||||||||| |||||    
T  9595822 gctttgtttgggagtttggaggggaagggaggggagggttttgg 9595779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 287 - 330
Target Start/End: Complemental strand, 39179313 - 39179270
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggctttgg 330  Q
    ||||| ||||||||||||||||| |||||||||||||| |||||    
T  39179313 gctttgtttgggagtttggaggggaagggaggggagggttttgg 39179270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 287 - 354
Target Start/End: Original strand, 47905511 - 47905577
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggctttgggggttgaaaatatatagaaaaatg 354  Q
    ||||| |||| ||||||| |||| |||||| ||||||| ||||||| ||| |||||||||||||||||    
T  47905511 gctttgtttgagagtttgaaggggaagggaagggaggggtttgggg-ttggaaatatatagaaaaatg 47905577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 354
Target Start/End: Complemental strand, 1523862 - 1523788
Alignment:
Q  281 tcttacgctttatttgggagtttggagggaaagggaggggagggcttt-gggggttgaaaatatatagaaaaatg 354  Q
    ||||| ||||| ||||||||||||||||| || ||| ||||| | ||| |||||||| |||||||| ||||||||    
T  1523862 tcttaggctttgtttgggagtttggaggggaatggatgggagagttttggggggttggaaatatattgaaaaatg 1523788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 353
Target Start/End: Original strand, 47206249 - 47206311
Alignment:
Q  293 tttgggagtttggagggaaagggagggg-agggctttggggg-ttgaaaatatatagaaaaat 353  Q
    ||||| ||| ||||||| |||||||||| ||||||||||||| ||| ||||||||||||||||    
T  47206249 tttggcagtatggaggggaagggagggggagggctttggggggttggaaatatatagaaaaat 47206311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 351
Target Start/End: Complemental strand, 14153347 - 14153310
Alignment:
Q  314 ggaggggagggctttgggggttgaaaatatatagaaaa 351  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  14153347 ggaggggagggctttgggggttgtaaatatgtagaaaa 14153310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 354
Target Start/End: Complemental strand, 17688577 - 17688536
Alignment:
Q  314 ggaggggagggctttggggg-ttgaaaatatatagaaaaatg 354  Q
    |||||||||||||||||||| ||||||||||||| |||||||    
T  17688577 ggaggggagggctttggggggttgaaaatatataaaaaaatg 17688536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 324
Target Start/End: Original strand, 39125266 - 39125303
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggaggg 324  Q
    ||||| ||||||||||||||||||| ||||||||||||    
T  39125266 gctttgtttgggagtttggagggaaggggaggggaggg 39125303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 354
Target Start/End: Complemental strand, 39509029 - 39508961
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggctttgg-gggttgaaaatatatagaaaaatg 354  Q
    ||||| ||||||||||||||||| | |||| ||||| ||||||| | || | |||||||||||||||||    
T  39509029 gctttgtttgggagtttggaggggaggggaagggagagctttggcgagtgggaaatatatagaaaaatg 39508961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 354
Target Start/End: Original strand, 42488460 - 42488514
Alignment:
Q  298 gagtttggagggaaagggaggggagggctttgggggttgaaaatatatagaaaaatg 354  Q
    |||||||||||||| |||| | ||||||||||||| ||| |||||||||||||||||    
T  42488460 gagtttggagggaa-gggatgagagggctttgggg-ttggaaatatatagaaaaatg 42488514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 354
Target Start/End: Complemental strand, 50476789 - 50476721
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggctttgggggttga-aaatatatagaaaaatg 354  Q
    ||||| ||||||||||||||||| |||||  ||||||| ||||| || ||| ||||||||||| |||||    
T  50476789 gctttgtttgggagtttggaggggaagggtagggagggttttggagggtgagaaatatatagagaaatg 50476721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 282 - 353
Target Start/End: Complemental strand, 10295752 - 10295680
Alignment:
Q  282 cttacgctttatttgggagtttggagggaaagggaggggagggctttg-ggggttgaaaatatatagaaaaat 353  Q
    |||| ||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  10295752 cttaggctttgtttgggagtttggaggggaagggaggggagggctttggggggttgaaaatatatagaaaaat 10295680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 282 - 354
Target Start/End: Original strand, 25598584 - 25598657
Alignment:
Q  282 cttacgctttatttgggagtttggagggaaagggaggggagggctttgg-gggttgaaaatatatagaaaaatg 354  Q
    |||| ||||| ||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||    
T  25598584 cttaggctttgtttgggagtttggaggggaagggaggggaggactttggcgggttgaaaatatatagaaaaatg 25598657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 280 - 354
Target Start/End: Original strand, 38120008 - 38120083
Alignment:
Q  280 ttcttacgctttatttgggagtttggagggaaagggaggggagggcttt-gggggttgaaaatatatagaaaaatg 354  Q
    |||||| ||||| ||||||||||||||||| |||||||||||| ||||| |||||||| |||||||||||||||||    
T  38120008 ttcttaggctttgtttgggagtttggaggggaagggaggggagagctttggggggttggaaatatatagaaaaatg 38120083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 293 - 353
Target Start/End: Complemental strand, 25027177 - 25027116
Alignment:
Q  293 tttgggagtttggagggaaagggaggggagggctttg-ggggttgaaaatatatagaaaaat 353  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||    
T  25027177 tttgggagtttggaggggaagggaggggagggctttgaggggttggaaatatatagaaaaat 25027116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 287 - 354
Target Start/End: Complemental strand, 1658437 - 1658370
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggctttgggggttgaaaatatatagaaaaatg 354  Q
    ||||| |||| ||||||| |||| |||||||||||||| ||||||||||| |||||||||||||||||    
T  1658437 gctttgtttgagagtttgaaggggaagggaggggagggttttgggggttggaaatatatagaaaaatg 1658370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 281 - 354
Target Start/End: Complemental strand, 17093164 - 17093090
Alignment:
Q  281 tcttacgctttatttgggagtttggagggaaagggaggggagggcttt-gggggttgaaaatatatagaaaaatg 354  Q
    ||||| ||||| ||||||||||||||||| ||||||||| ||| |||| |||||||| |||||||||||||||||    
T  17093164 tcttaggctttgtttgggagtttggaggggaagggagggaaggtctttggggggttggaaatatatagaaaaatg 17093090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 287 - 354
Target Start/End: Complemental strand, 33718442 - 33718374
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggctttg-ggggttgaaaatatatagaaaaatg 354  Q
    ||||| ||||||||||||||||| |||||| | |||||||||| ||||||| |||||||||||||||||    
T  33718442 gctttgtttgggagtttggaggggaagggatgagagggctttgtggggttggaaatatatagaaaaatg 33718374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 279 - 354
Target Start/End: Original strand, 4648795 - 4648875
Alignment:
Q  279 attcttacgctttatttgggagtttggagg----gaaagggaggggagggctttg-ggggttgaaaatatatagaaaaatg 354  Q
    ||||||| ||||| ||||||||||||||||    | ||||||||||||||||||| ||||||| |||||||||||||||||    
T  4648795 attcttaggctttgtttgggagtttggaggggaaggaagggaggggagggctttgaggggttggaaatatatagaaaaatg 4648875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 288 - 354
Target Start/End: Complemental strand, 35701663 - 35701596
Alignment:
Q  288 ctttatttgggagtttggagggaaagggaggggagggctttg-ggggttgaaaatatatagaaaaatg 354  Q
    |||| ||||||||||||||||| | ||||||||||||||| | ||||||| |||||||||||||||||    
T  35701663 ctttgtttgggagtttggaggggacgggaggggagggcttcgaggggttggaaatatatagaaaaatg 35701596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 293 - 344
Target Start/End: Original strand, 38302186 - 38302238
Alignment:
Q  293 tttgggagtttggagggaaagggaggggagggctttggg-ggttgaaaatata 344  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||| |||||||    
T  38302186 tttgggagtttggaggggaagggaggggagggctttgggaggttggaaatata 38302238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 333
Target Start/End: Original strand, 21916124 - 21916170
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggctttggggg 333  Q
    |||||||||||||||||||||||||||||| |||| | |||||||||    
T  21916124 gctttatttgggagtttggagggaaagggaagggatgactttggggg 21916170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 352
Target Start/End: Complemental strand, 2021214 - 2021176
Alignment:
Q  314 ggaggggagggctttgggggttgaaaatatatagaaaaa 352  Q
    ||||||||||||||||||||||| ||||||||| |||||    
T  2021214 ggaggggagggctttgggggttggaaatatataaaaaaa 2021176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 346
Target Start/End: Original strand, 27479993 - 27480047
Alignment:
Q  293 tttgggagtttggagggaaagggaggggagggctttggg-ggttgaaaatatata 346  Q
    |||| |||||||||||| ||||||||||||| ||||||| ||||| |||||||||    
T  27479993 tttgagagtttggaggggaagggaggggaggactttgggaggttggaaatatata 27480047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 287 - 354
Target Start/End: Complemental strand, 36796686 - 36796618
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggctttgggg-gttgaaaatatatagaaaaatg 354  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  36796686 gctttgtttgggagtttggaggaaaagggaggggagggctttggggagttgaaaatatatagaaaaatg 36796618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 282 - 354
Target Start/End: Complemental strand, 39499464 - 39499393
Alignment:
Q  282 cttacgctttatttgggagtttggagggaaagggaggggagggctttgggggttgaaaatatatagaaaaatg 354  Q
    |||| ||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  39499464 cttaggctttgtttgggagtttggaggggaagggaggggagggcttt-ggggttgaaaatatatagaaaaatg 39499393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 282 - 354
Target Start/End: Original strand, 47789261 - 47789334
Alignment:
Q  282 cttacgctttatttgggagtttggagggaaagggaggggagggcttt-gggggttgaaaatatatagaaaaatg 354  Q
    |||| ||||| ||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||    
T  47789261 cttaggctttgtttgggagtttggaggggaagggaggggagggctttggggggttggaaatatatagaaaaatg 47789334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 293 - 354
Target Start/End: Original strand, 49682828 - 49682889
Alignment:
Q  293 tttgggagtttggagggaaagggaggggagggctttgggggttgaaaatatatagaaaaatg 354  Q
    |||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  49682828 tttgtgagtttggaggggaagggaggggagggctttgggggttggaaatatatagaaaaatg 49682889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 287 - 354
Target Start/End: Complemental strand, 49861097 - 49861029
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggctttg-ggggttgaaaatatatagaaaaatg 354  Q
    ||||| ||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||    
T  49861097 gctttgtttgggagtttggaggggaagggaggggagggctttggggggttggaaatatatagaaaaatg 49861029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 287 - 353
Target Start/End: Original strand, 44411974 - 44412041
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggcttt-gggggttgaaaatatatagaaaaat 353  Q
    ||||| ||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||    
T  44411974 gctttgtttgggagtttggaggggaagggaggggagggctttggggggttggaaatatatagaaaaat 44412041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 287 - 354
Target Start/End: Original strand, 30121342 - 30121410
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggcttt-gggggttgaaaatatatagaaaaatg 354  Q
    ||||| ||||||||||||||||| | |||||||||||||||| |||||||| |||||||||||||||||    
T  30121342 gctttgtttgggagtttggaggggaggggaggggagggctttggggggttggaaatatatagaaaaatg 30121410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 287 - 354
Target Start/End: Original strand, 47434114 - 47434181
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggctttgggggttgaaaatatatagaaaaatg 354  Q
    ||||| ||||||||||||||||| ||| |||||||||| ||||| ||||| |||||||||||||||||    
T  47434114 gctttgtttgggagtttggaggggaagagaggggagggttttggaggttggaaatatatagaaaaatg 47434181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 287 - 354
Target Start/End: Complemental strand, 43237551 - 43237483
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggcttt-gggggttgaaaatatatagaaaaatg 354  Q
    ||||| ||||||||||||||||| |||||||| ||||| ||| |||||||| |||||||||||||||||    
T  43237551 gctttgtttgggagtttggaggggaagggaggagagggatttggggggttggaaatatatagaaaaatg 43237483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 287 - 354
Target Start/End: Complemental strand, 55439846 - 55439778
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggct-ttgggggttgaaaatatatagaaaaatg 354  Q
    ||||| ||||||||||||||||| ||||||||||||||||   |||||||||||||| |||||||||||    
T  55439846 gctttgtttgggagtttggaggggaagggaggggagggctccggggggttgaaaatacatagaaaaatg 55439778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 287 - 354
Target Start/End: Complemental strand, 55445170 - 55445102
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggctttg-ggggttgaaaatatatagaaaaatg 354  Q
    ||||| ||||||||||||||||| |||||||||||||||| ||  |||||| |||||||||||||||||    
T  55445170 gctttgtttgggagtttggaggggaagggaggggagggctctgatgggttggaaatatatagaaaaatg 55445102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 293 - 353
Target Start/End: Original strand, 47714496 - 47714560
Alignment:
Q  293 tttgggagtttggagggaaag---ggaggggagggctttggg-ggttgaaaatatatagaaaaat 353  Q
    ||||||||||||||||| |||   |||||||||||||||||| ||||||||||||||||||||||    
T  47714496 tttgggagtttggaggggaagaagggaggggagggctttgggaggttgaaaatatatagaaaaat 47714560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 287 - 354
Target Start/End: Original strand, 3042948 - 3043016
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggcttt-gggggttgaaaatatatagaaaaatg 354  Q
    ||||| ||||||||||||||||| ||| || ||||||||||| |||||||| ||||||||| |||||||    
T  3042948 gctttgtttgggagtttggaggggaagagatgggagggctttggggggttggaaatatataaaaaaatg 3043016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 287 - 354
Target Start/End: Original strand, 30131706 - 30131774
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggcttt-gggggttgaaaatatatagaaaaatg 354  Q
    ||||| ||||||||||||||||||||| ||  |||||||||| |||||||| ||| |||||||||||||    
T  30131706 gctttgtttgggagtttggagggaaagagaatggagggctttggggggttggaaaaatatagaaaaatg 30131774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 287 - 354
Target Start/End: Complemental strand, 38515498 - 38515430
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggcttt-gggggttgaaaatatatagaaaaatg 354  Q
    ||||| ||||| | ||||||||| |||||||||||||| ||  ||||||||||||||||||||||||||    
T  38515498 gctttgtttggaaatttggaggggaagggaggggagggtttcagggggttgaaaatatatagaaaaatg 38515430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 295 - 354
Target Start/End: Original strand, 41961805 - 41961865
Alignment:
Q  295 tgggagtttggagggaaagggaggggagggcttt-gggggttgaaaatatatagaaaaatg 354  Q
    |||||||| |||||| |||||||||||||| ||| |||||||| |||||||||||||||||    
T  41961805 tgggagttaggaggggaagggaggggagggttttggggggttggaaatatatagaaaaatg 41961865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 343
Target Start/End: Complemental strand, 3537472 - 3537410
Alignment:
Q  282 cttacgctttatttgggagtttggagggaaagggaggggagggctttg-ggggttgaaaatat 343  Q
    |||| ||||| ||||||||||||||||| ||||||||||| ||||||| ||||| ||||||||    
T  3537472 cttaggctttgtttgggagtttggaggggaagggaggggaaggctttgaggggtggaaaatat 3537410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 332
Target Start/End: Complemental strand, 39115171 - 39115121
Alignment:
Q  282 cttacgctttatttgggagtttggagggaaagggaggggagggctttgggg 332  Q
    |||| ||||| |||| |||||||||||||||||||||||| ||||||||||    
T  39115171 cttaggctttgtttgtgagtttggagggaaagggaggggatggctttgggg 39115121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 353
Target Start/End: Complemental strand, 34306852 - 34306791
Alignment:
Q  293 tttgggagtttggagggaaagggaggggagggctttggggg-ttgaaaatatatagaaaaat 353  Q
    ||||||||| ||||||| ||||||| |||||| |||||||| ||| ||||||||||||||||    
T  34306852 tttgggagtatggaggggaagggagtggagggttttggggggttggaaatatatagaaaaat 34306791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 287 - 332
Target Start/End: Original strand, 52620655 - 52620700
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggctttgggg 332  Q
    ||||| ||||||||||||||||| | ||||||||||||||||||||    
T  52620655 gctttgtttgggagtttggaggggaggggaggggagggctttgggg 52620700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 352
Target Start/End: Complemental strand, 25428901 - 25428863
Alignment:
Q  314 ggaggggagggctttgggggttgaaaatatatagaaaaa 352  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  25428901 ggaggggagtgttttgggggttgaaaatatatagaaaaa 25428863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 329
Target Start/End: Original strand, 38456489 - 38456531
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggctttg 329  Q
    ||||| ||||||||||||||||| |||||||||||| ||||||    
T  38456489 gctttgtttgggagtttggaggggaagggaggggagagctttg 38456531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 354
Target Start/End: Complemental strand, 2420893 - 2420852
Alignment:
Q  314 ggaggggagggctttggg-ggttgaaaatatatagaaaaatg 354  Q
    |||||||||||||||||| ||||| |||||||||||||||||    
T  2420893 ggaggggagggctttgggaggttggaaatatatagaaaaatg 2420852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 352
Target Start/End: Complemental strand, 7661275 - 7661234
Alignment:
Q  311 aagggaggggagggctttgggggttgaaaatatatagaaaaa 352  Q
    |||||||| ||||||||||||||||| ||||||||| |||||    
T  7661275 aagggaggagagggctttgggggttggaaatatataaaaaaa 7661234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 324
Target Start/End: Complemental strand, 47789653 - 47789616
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggaggg 324  Q
    ||||| ||||||||||||||||| ||||||||||||||    
T  47789653 gctttgtttgggagtttggaggggaagggaggggaggg 47789616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 354
Target Start/End: Complemental strand, 38593189 - 38593149
Alignment:
Q  314 ggaggggagggctttgggggttgaaaatatatagaaaaatg 354  Q
    |||||| |||||||||||||||| | |||||||||||||||    
T  38593189 ggagggaagggctttgggggttggatatatatagaaaaatg 38593149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1562 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold1562
Description:

Target: scaffold1562; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 288 - 354
Target Start/End: Complemental strand, 400 - 334
Alignment:
Q  288 ctttatttgggagtttggagggaaagggaggggagggctttgggggttgaaaatatatagaaaaatg 354  Q
    |||| |||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  400 ctttgtttgagagtttggaggggaagggaggggagggctttgggggttggaaatatatagaaaaatg 334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1158 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold1158
Description:

Target: scaffold1158; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 288 - 354
Target Start/End: Original strand, 2193 - 2259
Alignment:
Q  288 ctttatttgggagtttggagggaaagggaggggagggctttgggggttgaaaatatatagaaaaatg 354  Q
    |||| |||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  2193 ctttgtttgagagtttggaggggaagggaggggagggctttgggggttggaaatatatagaaaaatg 2259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 282 - 354
Target Start/End: Original strand, 35270 - 35343
Alignment:
Q  282 cttacgctttatttgggagtttggagggaaagggaggggagggcttt-gggggttgaaaatatatagaaaaatg 354  Q
    |||| ||||| ||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||    
T  35270 cttaggctttgtttgggagtttggaggggaagggaggggagggctttggggggttggaaatatatagaaaaatg 35343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 287 - 354
Target Start/End: Complemental strand, 36906450 - 36906382
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggctttggg-ggttgaaaatatatagaaaaatg 354  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||    
T  36906450 gctttgtttgggagtttggaggggaagggaggggagggctttgggaggttggaaatatatagaaaaatg 36906382  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 287 - 354
Target Start/End: Original strand, 34148400 - 34148467
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggctttgggggttgaaaatatatagaaaaatg 354  Q
    ||||| ||||||||||||||||| |||||||||||||| ||||||||||| ||||||| |||||||||    
T  34148400 gctttgtttgggagtttggaggggaagggaggggagggttttgggggttggaaatataaagaaaaatg 34148467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 301 - 354
Target Start/End: Complemental strand, 34272762 - 34272708
Alignment:
Q  301 tttggagggaaagggaggggagggctttg-ggggttgaaaatatatagaaaaatg 354  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  34272762 tttggagggaaagggaggggagggctttggggggttggaaatatatagaaaaatg 34272708  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 293 - 353
Target Start/End: Original strand, 3404399 - 3404460
Alignment:
Q  293 tttgggagtttggagggaaagggaggggagggctttg-ggggttgaaaatatatagaaaaat 353  Q
    ||||||||||||||||| ||||||||||||| ||||| ||||||| ||||||||||||||||    
T  3404399 tttgggagtttggaggggaagggaggggaggactttgaggggttggaaatatatagaaaaat 3404460  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 287 - 352
Target Start/End: Original strand, 33230866 - 33230932
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggctttgggg-gttgaaaatatatagaaaaa 352  Q
    ||||| ||||||||||||||||| |||||||| ||||||||||||| |||| ||||||||| |||||    
T  33230866 gctttgtttgggagtttggaggggaagggaggagagggctttggggagttggaaatatataaaaaaa 33230932  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 287 - 353
Target Start/End: Original strand, 37659353 - 37659418
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggctttgggggttgaaaatatatagaaaaat 353  Q
    ||||| |||| || ||||||||| |||||||||||||||||| ||||||| ||||||||||||||||    
T  37659353 gctttgtttgagaatttggaggggaagggaggggagggcttt-ggggttggaaatatatagaaaaat 37659418  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 287 - 354
Target Start/End: Original strand, 1941870 - 1941938
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggctttgg-gggttgaaaatatatagaaaaatg 354  Q
    ||||| ||||||||||||||||| ||||||||||||| |||||| |||||  |||| ||||||||||||    
T  1941870 gctttgtttgggagtttggaggggaagggaggggaggactttggagggtttgaaatttatagaaaaatg 1941938  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 287 - 354
Target Start/End: Original strand, 36102710 - 36102778
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggctttgggg-gttgaaaatatatagaaaaatg 354  Q
    ||||| ||||||||||  ||||| ||| |||||||||| ||||||| ||||||||||||||||||||||    
T  36102710 gctttgtttgggagttaagaggggaagagaggggagggttttggggggttgaaaatatatagaaaaatg 36102778  T

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Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 293 - 344
Target Start/End: Original strand, 1111063 - 1111114
Alignment:
Q  293 tttgggagtttggagggaaagggaggggagggctttgggggttgaaaatata 344  Q
    ||||||||||||||||| |||||| ||||||||||||||||| | |||||||    
T  1111063 tttgggagtttggaggggaagggaagggagggctttgggggtgggaaatata 1111114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 293 - 351
Target Start/End: Complemental strand, 34349970 - 34349911
Alignment:
Q  293 tttgggagtttggagggaaagggaggggagggctttgg-gggttgaaaatatatagaaaa 351  Q
    ||||||||||||||||| |||| |||||| |||||||| |||||| ||||||||||||||    
T  34349970 tttgggagtttggaggggaaggaaggggaaggctttggagggttggaaatatatagaaaa 34349911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 354
Target Start/End: Complemental strand, 25033635 - 25033573
Alignment:
Q  293 tttgggagtttggagggaaagggaggggagggctttg-ggggttgaaaatatatagaaaaatg 354  Q
    ||||||||||||||||| ||||||||||||||| ||| ||| ||  |||||||||||||||||    
T  25033635 tttgggagtttggaggggaagggaggggagggcattgtgggattagaaatatatagaaaaatg 25033573  T

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Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 293 - 349
Target Start/End: Complemental strand, 7835 - 7778
Alignment:
Q  293 tttgggagtttggagggaaagggaggggagggctttg-ggggttgaaaatatatagaa 349  Q
    ||||||||| |||| || ||||||||||||||||||| ||||||| ||||||||||||    
T  7835 tttgggagtgtggaagggaagggaggggagggctttggggggttggaaatatatagaa 7778  T

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Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 330
Target Start/End: Complemental strand, 1111338 - 1111290
Alignment:
Q  282 cttacgctttatttgggagtttggagggaaagggaggggagggctttgg 330  Q
    |||| ||||| |||| |||||||||||||||||| ||||||||||||||    
T  1111338 cttaggctttgtttgcgagtttggagggaaagggtggggagggctttgg 1111290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 328
Target Start/End: Original strand, 27030031 - 27030072
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggcttt 328  Q
    ||||| ||||||||||| ||||||||||||||||| ||||||    
T  27030031 gctttgtttgggagttttgagggaaagggaggggaaggcttt 27030072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 287 - 354
Target Start/End: Original strand, 7666984 - 7667052
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggcttt-gggggttgaaaatatatagaaaaatg 354  Q
    ||||| ||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||    
T  7666984 gctttgtttgggagtttggaggggaagggaggggagggctttggggggttggaaatatatagaaaaatg 7667052  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 287 - 354
Target Start/End: Original strand, 3658331 - 3658398
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggctttgggggttgaaaatatatagaaaaatg 354  Q
    ||||| ||||||||||||||||| |||| ||| |||||||||||||||| ||||||||||||||||||    
T  3658331 gctttgtttgggagtttggaggggaaggaaggagagggctttgggggttaaaaatatatagaaaaatg 3658398  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 287 - 355
Target Start/End: Original strand, 47275821 - 47275890
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggcttt-gggggttgaaaatatatagaaaaatgt 355  Q
    ||||| ||||||||||||||||| |||||| | ||||||||| |||||||||||||||||||||||||||    
T  47275821 gctttgtttgggagtttggaggggaagggaagtgagggctttggggggttgaaaatatatagaaaaatgt 47275890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 287 - 354
Target Start/End: Original strand, 28437361 - 28437429
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggcttt-gggggttgaaaatatatagaaaaatg 354  Q
    ||||| |||| |||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||    
T  28437361 gctttgtttgagagtttggaggggaagggaggggagggctttggggggttggaaatatatagaaaaatg 28437429  T

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Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 287 - 354
Target Start/End: Original strand, 34651873 - 34651941
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggctttg-ggggttgaaaatatatagaaaaatg 354  Q
    ||||| ||||||||||||||||| ||||||||||| ||||||| ||||||| |||||||||||||||||    
T  34651873 gctttgtttgggagtttggaggggaagggaggggatggctttgaggggttggaaatatatagaaaaatg 34651941  T

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Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 287 - 354
Target Start/End: Complemental strand, 43189118 - 43189050
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggctttg-ggggttgaaaatatatagaaaaatg 354  Q
    ||||| |||||||||||||| || ||||||| ||||||||||| ||||||| |||||||||||||||||    
T  43189118 gctttgtttgggagtttggatgggaagggagaggagggctttggggggttggaaatatatagaaaaatg 43189050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 293 - 354
Target Start/End: Original strand, 33406418 - 33406480
Alignment:
Q  293 tttgggagtttggagggaaagggaggggagggctttg-ggggttgaaaatatatagaaaaatg 354  Q
    |||||||||||||| || ||||||||||||| ||||| ||||||||||||||||| |||||||    
T  33406418 tttgggagtttggatgggaagggaggggaggactttgaggggttgaaaatatataaaaaaatg 33406480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 287 - 353
Target Start/End: Original strand, 33113463 - 33113525
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggctttgggggttgaaaatatatagaaaaat 353  Q
    ||||| ||||||||||||||||| ||||||    |||||||||||||||| ||||||||||||||||    
T  33113463 gctttgtttgggagtttggaggggaaggga----agggctttgggggttggaaatatatagaaaaat 33113525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 354
Target Start/End: Original strand, 5967885 - 5967940
Alignment:
Q  299 agtttggagggaaagggaggggagggctttgggggttgaaaatatatagaaaaatg 354  Q
    ||||||||| | |||||||||||||| ||||||||||| ||||||||| |||||||    
T  5967885 agtttggagaggaagggaggggagggatttgggggttggaaatatataaaaaaatg 5967940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 287 - 354
Target Start/End: Complemental strand, 38236053 - 38235987
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggctttgggggttgaaaatatatagaaaaatg 354  Q
    ||||| ||||||||||||||||| |||||||||||| | ||| |||| || |||||||||||||||||    
T  38236053 gctttgtttgggagtttggaggggaagggaggggagag-ttttggggctggaaatatatagaaaaatg 38235987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 43665015 - 43665057
Alignment:
Q  313 gggaggggagggctttgggg-gttgaaaatatatagaaaaatg 354  Q
    |||||||||||||||||||| ||||||||||||||||||||||    
T  43665015 gggaggggagggctttggggggttgaaaatatatagaaaaatg 43665057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 280 - 349
Target Start/End: Original strand, 41002065 - 41002134
Alignment:
Q  280 ttcttacgctttatttgggagtttggagggaaagggaggggagggctttgggggttgaaaatatatagaa 349  Q
    |||||| | ||| ||||||||||||| ||| |||||| ||||||  ||||||||||| ||||||||||||    
T  41002065 ttcttaggttttgtttgggagtttggtggggaagggaagggaggattttgggggttggaaatatatagaa 41002134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 354
Target Start/End: Original strand, 42620183 - 42620240
Alignment:
Q  298 gagtttggagggaaagggaggggagggctttggggg-ttgaaaatatatagaaaaatg 354  Q
    |||||||||||||||||||||| | ||| ||||||| ||| |||||||||||||||||    
T  42620183 gagtttggagggaaagggagggaaaggccttgggggtttggaaatatatagaaaaatg 42620240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 335
Target Start/End: Complemental strand, 33872261 - 33872213
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggctttgggggtt 335  Q
    ||||| |||| |||||||||||| | |||||||||||||||||||||||    
T  33872261 gctttgtttgcgagtttggaggggaggggaggggagggctttgggggtt 33872213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 332
Target Start/End: Complemental strand, 44690118 - 44690079
Alignment:
Q  293 tttgggagtttggagggaaagggaggggagggctttgggg 332  Q
    ||||||| ||||||||| ||||||||||||||||||||||    
T  44690118 tttgggaatttggaggggaagggaggggagggctttgggg 44690079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 354
Target Start/End: Complemental strand, 19644542 - 19644488
Alignment:
Q  301 tttggagggaaagggaggggagggctttggggg-ttgaaaatatatagaaaaatg 354  Q
    ||||||||| || ||||||||||| |||||||| ||| |||||||||||||||||    
T  19644542 tttggaggggaaaggaggggagggttttggggggttggaaatatatagaaaaatg 19644488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 354
Target Start/End: Complemental strand, 44720333 - 44720274
Alignment:
Q  293 tttgggagtttggagggaaagggaggggagggctttgggggttgaaaatatatagaaaaatg 354  Q
    |||| ||||||||||| ||||||  |||||| |||| | |||||||||||||||||||||||    
T  44720333 tttgagagtttggaggaaaaggg--gggaggactttagaggttgaaaatatatagaaaaatg 44720274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 330
Target Start/End: Complemental strand, 3658728 - 3658675
Alignment:
Q  277 aaattcttacgctttatttgggagtttggagggaaagggaggggagggctttgg 330  Q
    |||| |||| ||||| ||||||||||||||||| | |||||||||||| |||||    
T  3658728 aaatacttaggctttgtttgggagtttggaggggaggggaggggagggttttgg 3658675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 330
Target Start/End: Original strand, 35902075 - 35902112
Alignment:
Q  293 tttgggagtttggagggaaagggaggggagggctttgg 330  Q
    ||||||||||||||||| |||||||||||||| |||||    
T  35902075 tttgggagtttggaggggaagggaggggagggttttgg 35902112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 330
Target Start/End: Complemental strand, 7667377 - 7667329
Alignment:
Q  282 cttacgctttatttgggagtttggagggaaagggaggggagggctttgg 330  Q
    |||| ||||| ||||||||||||||||| | |||||||||||| |||||    
T  7667377 cttaggctttgtttgggagtttggaggggaggggaggggagggttttgg 7667329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 282 - 354
Target Start/End: Original strand, 29241648 - 29241721
Alignment:
Q  282 cttacgctttatttgggagtttggagggaaagggaggggagggcttt-gggggttgaaaatatatagaaaaatg 354  Q
    |||| ||||| ||||||||||||||||| |||||||||||||||||| |||||||| |||||| ||||||||||    
T  29241648 cttaggctttgtttgggagtttggaggggaagggaggggagggctttagggggttggaaatatgtagaaaaatg 29241721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 287 - 354
Target Start/End: Original strand, 4909700 - 4909768
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggctttgggggttga-aaatatatagaaaaatg 354  Q
    ||||| ||||||||||||||||| |||||||| |||||||||||||||| | |||||||||||||||||    
T  4909700 gctttgtttgggagtttggaggggaagggaggcgagggctttgggggtttagaaatatatagaaaaatg 4909768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 287 - 354
Target Start/End: Complemental strand, 5825593 - 5825525
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggcttt-gggggttgaaaatatatagaaaaatg 354  Q
    ||||| ||||||||||||||||| ||||||||| ||| |||| ||||||||||||||||||||||||||    
T  5825593 gctttgtttgggagtttggaggggaagggagggaaggactttggggggttgaaaatatatagaaaaatg 5825525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 293 - 353
Target Start/End: Original strand, 26480957 - 26481018
Alignment:
Q  293 tttgggagtttggagggaaagggaggggagggcttt-gggggttgaaaatatatagaaaaat 353  Q
    |||||||||||||| || |||||||||||||||||| |||||||| ||||||||||||||||    
T  26480957 tttgggagtttggaagggaagggaggggagggctttcgggggttggaaatatatagaaaaat 26481018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 293 - 354
Target Start/End: Complemental strand, 24735137 - 24735075
Alignment:
Q  293 tttgggagtttggagggaaagggaggggagggcttt-gggggttgaaaatatatagaaaaatg 354  Q
    ||||||||||||||||| | |||||||||||| ||| |||||||| |||||||||||||||||    
T  24735137 tttgggagtttggaggggaggggaggggagggttttggggggttggaaatatatagaaaaatg 24735075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 293 - 354
Target Start/End: Complemental strand, 34914882 - 34914820
Alignment:
Q  293 tttgggagtttggagggaaagggaggggagggctttggggg-ttgaaaatatatagaaaaatg 354  Q
    ||||||||| ||||||| |||||||||||||| |||||||| || ||||||||||||||||||    
T  34914882 tttgggagtatggaggggaagggaggggagggttttgggggtttaaaaatatatagaaaaatg 34914820  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 287 - 354
Target Start/End: Original strand, 31345189 - 31345257
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggcttt-gggggttgaaaatatatagaaaaatg 354  Q
    ||||| |||||||||||||| || || ||||||||||| ||| |||||||| |||||||||||||||||    
T  31345189 gctttgtttgggagtttggaagggaacggaggggagggttttagggggttggaaatatatagaaaaatg 31345257  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 354
Target Start/End: Original strand, 23094949 - 23095016
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggctttgggg-gttgaaaatatatagaaaaatg 354  Q
    ||||| ||||||||||||||| | ||||||||||| ||||||||||  ||| |||||||||||||||||    
T  23094949 gctttgtttgggagtttggagtggaagggagggga-ggctttggggttttggaaatatatagaaaaatg 23095016  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 353
Target Start/End: Complemental strand, 1029541 - 1029486
Alignment:
Q  299 agtttggagggaaagggaggggagggctttg-ggggttgaaaatatatagaaaaat 353  Q
    ||||||||||| ||  ||||||||||||||| ||||||| ||||||||||||||||    
T  1029541 agtttggaggggaatagaggggagggctttggggggttggaaatatatagaaaaat 1029486  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 287 - 353
Target Start/End: Original strand, 26574215 - 26574282
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggcttt-gggggttgaaaatatatagaaaaat 353  Q
    ||||| ||||||||||||| ||| |||||||| ||| ||||| |||||||| |||||||| |||||||    
T  26574215 gctttgtttgggagtttggtggggaagggaggagagagctttggggggttggaaatatattgaaaaat 26574282  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 329
Target Start/End: Complemental strand, 2365810 - 2365762
Alignment:
Q  281 tcttacgctttatttgggagtttggagggaaagggaggggagggctttg 329  Q
    ||||| ||||| ||||||||||||||||| | |||||||||||| ||||    
T  2365810 tcttaggctttgtttgggagtttggaggggaggggaggggagggttttg 2365762  T

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Target: scaffold0717 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 282 - 352
Target Start/End: Complemental strand, 1845 - 1774
Alignment:
Q  282 cttacgctttatttgggagtttggagggaaagggaggggagggctttg-ggggttgaaaatatatagaaaaa 352  Q
    |||| ||||| |||| |||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||    
T  1845 cttaggctttgtttgagagtttggaggggaagggaggggagggctttggggggttggaaatatatagaaaaa 1774  T

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Target: scaffold0952 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0952
Description:

Target: scaffold0952; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 282 - 354
Target Start/End: Original strand, 3484 - 3557
Alignment:
Q  282 cttacgctttatttgggagtttggagggaaagggaggggagggcttt-gggggttgaaaatatatagaaaaatg 354  Q
    |||| ||||| ||||||||||||||||| ||| || ||||||||||| ||||||||  ||||||||||||||||    
T  3484 cttaggctttgtttgggagtttggaggggaagagatgggagggctttggggggttggcaatatatagaaaaatg 3557  T

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Target: scaffold0059 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 313 - 354
Target Start/End: Complemental strand, 68001 - 67960
Alignment:
Q  313 gggaggggagggctttgggggttgaaaatatatagaaaaatg 354  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  68001 gggaggggagggctttgggggttggaaatatatagaaaaatg 67960  T

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Target: scaffold0059; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 313 - 354
Target Start/End: Complemental strand, 76106 - 76065
Alignment:
Q  313 gggaggggagggctttgggggttgaaaatatatagaaaaatg 354  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  76106 gggaggggagggctttgggggttggaaatatatagaaaaatg 76065  T

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Target: scaffold0636 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0636
Description:

Target: scaffold0636; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 287 - 354
Target Start/End: Complemental strand, 8652 - 8584
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggctttg-ggggttgaaaatatatagaaaaatg 354  Q
    ||||| |||||| |||||||||| ||| ||||||||||||||| ||||||| ||||||||| |||||||    
T  8652 gctttgtttgggggtttggaggggaagagaggggagggctttgaggggttggaaatatatacaaaaatg 8584  T

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Target: scaffold0013 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 354
Target Start/End: Original strand, 107657 - 107697
Alignment:
Q  314 ggaggggagggctttgggggttgaaaatatatagaaaaatg 354  Q
    |||||| |||||||||||||||| |||||||||||||||||    
T  107657 ggagggaagggctttgggggttggaaatatatagaaaaatg 107697  T

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Target: scaffold0036 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 287 - 330
Target Start/End: Original strand, 82669 - 82712
Alignment:
Q  287 gctttatttgggagtttggagggaaagggaggggagggctttgg 330  Q
    ||||| |||| |||||||||||| ||||||||||||||||||||    
T  82669 gctttctttgtgagtttggagggtaagggaggggagggctttgg 82712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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