View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14108_low_8 (Length: 350)

Name: NF14108_low_8
Description: NF14108
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14108_low_8
NF14108_low_8
[»] chr1 (4 HSPs)
chr1 (1-350)||(34489814-34490163)
chr1 (285-350)||(13350892-13350957)
chr1 (288-350)||(5831672-5831734)
chr1 (278-350)||(5855244-5855316)
[»] chr7 (6 HSPs)
chr7 (285-350)||(28805158-28805223)
chr7 (281-350)||(20556671-20556740)
chr7 (278-350)||(28804884-28804956)
chr7 (285-347)||(31303362-31303424)
chr7 (285-350)||(18312736-18312801)
chr7 (278-350)||(5083690-5083762)
[»] chr2 (5 HSPs)
chr2 (285-350)||(1400678-1400743)
chr2 (285-350)||(30906186-30906251)
chr2 (278-350)||(41212446-41212518)
chr2 (289-350)||(33667455-33667516)
chr2 (278-350)||(28527221-28527292)
[»] chr5 (6 HSPs)
chr5 (281-350)||(35922613-35922682)
chr5 (278-350)||(33958878-33958949)
chr5 (286-350)||(43262835-43262899)
chr5 (285-350)||(22169366-22169431)
chr5 (285-350)||(13312738-13312799)
chr5 (278-350)||(15221704-15221776)
[»] chr6 (7 HSPs)
chr6 (281-348)||(7915602-7915670)
chr6 (286-350)||(23595281-23595345)
chr6 (278-349)||(2835103-2835174)
chr6 (287-350)||(3222343-3222405)
chr6 (278-350)||(9068545-9068620)
chr6 (281-350)||(11108211-11108280)
chr6 (285-350)||(30056030-30056095)
[»] chr4 (3 HSPs)
chr4 (278-350)||(1966732-1966803)
chr4 (285-350)||(16583505-16583570)
chr4 (278-350)||(19596923-19596995)
[»] chr3 (7 HSPs)
chr3 (285-350)||(9710853-9710918)
chr3 (277-350)||(19280337-19280410)
chr3 (286-350)||(3823561-3823625)
chr3 (278-350)||(11510076-11510147)
chr3 (278-350)||(33488376-33488448)
chr3 (285-344)||(3785871-3785930)
chr3 (278-350)||(3823791-3823863)
[»] chr8 (4 HSPs)
chr8 (285-350)||(1251611-1251676)
chr8 (285-350)||(24576195-24576260)
chr8 (285-350)||(38606963-38607028)
chr8 (278-350)||(38606725-38606797)


Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 34489814 - 34490163
Alignment:
Q  1 tcaacgtttaactctagttttgttctacctctttcaggcttcacttgtatgccaaatatcaaatctttctattttgcttggctattagttttataccaag 100  Q
    |||| |||||||| ||| ||||| | ||||||||  ||   |||||||||  |||||||||||  |||| |||||||||||  | |||||||||||||||    
T  34489814 tcaaagtttaactatagatttgtccaacctctttagggagccacttgtataacaaatatcaaaattttcaattttgcttggaaagtagttttataccaag 34489913  T
Q  101 ataattatagaaacaactcacagccgcatcattttgattatgaaaatatccaccttagttgcccgttatgtagaagtcatattaacaacaatatagaaaa 200  Q
    |||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |    
T  34489914 atagatatagaaacaactcacagccgcatcattttgattatgaaaaaatccaccttagttgcccgatatgtagaagtcatattaacaacaatatagaaca 34490013  T
Q  201 tcacatagaagagagaataacaacagcggctcggatttcattagaataataattgcataaatattatccaaataagaaatgatcggtagacacccttaat 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34490014 tcacatagaagagagaataacaacagcggctcggatttcattagaatattaattgcataaatattatccaaataagaaatgattggtagacacccttaat 34490113  T
Q  301 gtgtataccctttggtataactctgtaaaatttcagttaaccaaatatat 350  Q
    ||||||| | |||||||  ||| |||||||||||||||||| ||||||||    
T  34490114 gtgtatatcttttggtaccactatgtaaaatttcagttaactaaatatat 34490163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 285 - 350
Target Start/End: Original strand, 13350892 - 13350957
Alignment:
Q  285 ggtagacacccttaatgtgtataccctttggtataactctgtaaaatttcagttaaccaaatatat 350  Q
    |||||||| |||||||||||| ||||||| |||  |||||  ||||||||||||||||||||||||    
T  13350892 ggtagacatccttaatgtgtacacccttttgtaccactctcgaaaatttcagttaaccaaatatat 13350957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 350
Target Start/End: Complemental strand, 5831734 - 5831672
Alignment:
Q  288 agacacccttaatgtgtataccctttggtataactctgtaaaatttcagttaaccaaatatat 350  Q
    ||||||| |||| ||||| |||| || |||| |||||| ||||||||| ||||||||||||||    
T  5831734 agacacctttaacgtgtacacccctttgtatcactctgaaaaatttcaattaaccaaatatat 5831672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 350
Target Start/End: Complemental strand, 5855316 - 5855244
Alignment:
Q  278 aatgatcggtagacacccttaatgtgtataccctttggtataactctgtaaaatttcagttaaccaaatatat 350  Q
    |||||| ||||||||||  |||| |||| || |||| |||  |||||| ||||||| ||||||||||||||||    
T  5855316 aatgataggtagacaccactaatatgtacactcttttgtaccactctgaaaaatttaagttaaccaaatatat 5855244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 285 - 350
Target Start/End: Complemental strand, 28805223 - 28805158
Alignment:
Q  285 ggtagacacccttaatgtgtataccctttggtataactctgtaaaatttcagttaaccaaatatat 350  Q
    |||||||||||||||||||||||||| || |||| |||||| ||||||| ||||||||||||||||    
T  28805223 ggtagacacccttaatgtgtatacccctttgtatcactctgaaaaatttaagttaaccaaatatat 28805158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 281 - 350
Target Start/End: Original strand, 20556671 - 20556740
Alignment:
Q  281 gatcggtagacacccttaatgtgtataccctttggtataactctgtaaaatttcagttaaccaaatatat 350  Q
    ||||||||||||||||||||||||||| |  || || | |||||  ||||||||||||||||||||||||    
T  20556671 gatcggtagacacccttaatgtgtatatctctttgtgttactctcgaaaatttcagttaaccaaatatat 20556740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 278 - 350
Target Start/End: Original strand, 28804884 - 28804956
Alignment:
Q  278 aatgatcggtagacacccttaatgtgtataccctttggtataactctgtaaaatttcagttaaccaaatatat 350  Q
    |||||| |||||||||||||||| |||| ||||||| |||  | |||  ||||||||||||||||||||||||    
T  28804884 aatgataggtagacacccttaatatgtacacccttttgtaccattctagaaaatttcagttaaccaaatatat 28804956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 347
Target Start/End: Original strand, 31303362 - 31303424
Alignment:
Q  285 ggtagacacccttaatgtgtataccctttggtataactctgtaaaatttcagttaaccaaata 347  Q
    ||||||||||||||||||||| | || || |||| |||||| ||||||||||| |||||||||    
T  31303362 ggtagacacccttaatgtgtacatccatttgtatcactctgaaaaatttcagtcaaccaaata 31303424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 350
Target Start/End: Original strand, 18312736 - 18312801
Alignment:
Q  285 ggtagacacccttaatgtgtataccctttggtataactctgtaaaatttcagttaaccaaatatat 350  Q
    ||||||||||||||| |||||||||| || |||  |||||  ||||||||| |||| |||||||||    
T  18312736 ggtagacacccttaacgtgtatacccctttgtaccactctcgaaaatttcaattaatcaaatatat 18312801  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 350
Target Start/End: Original strand, 5083690 - 5083762
Alignment:
Q  278 aatgatcggtagacacccttaatgtgtataccctttggtataactctgtaaaatttcagttaaccaaatatat 350  Q
    |||||| |||||||| ||||||| | ||||||| ||  ||| ||| || |||||||||||||| |||||||||    
T  5083690 aatgataggtagacatccttaatctatatacccctttatatcactttgaaaaatttcagttaatcaaatatat 5083762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 285 - 350
Target Start/End: Original strand, 1400678 - 1400743
Alignment:
Q  285 ggtagacacccttaatgtgtataccctttggtataactctgtaaaatttcagttaaccaaatatat 350  Q
    ||||||||||||||||||||| ||||||| |||  | |||| ||||||||||||||||||||||||    
T  1400678 ggtagacacccttaatgtgtacacccttttgtaccaatctgaaaaatttcagttaaccaaatatat 1400743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 285 - 350
Target Start/End: Complemental strand, 30906251 - 30906186
Alignment:
Q  285 ggtagacacccttaatgtgtataccctttggtataactctgtaaaatttcagttaaccaaatatat 350  Q
    |||| ||||| |||||||||| ||||||| |||  |||||| ||||||||||||||||||||||||    
T  30906251 ggtacacacctttaatgtgtacacccttttgtaccactctgaaaaatttcagttaaccaaatatat 30906186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 278 - 350
Target Start/End: Complemental strand, 41212518 - 41212446
Alignment:
Q  278 aatgatcggtagacacccttaatgtgtataccctttggtataactctgtaaaatttcagttaaccaaatatat 350  Q
    |||||||| | |||||||||||| ||||||||| || |||  |||||| ||||||| ||||||||||||||||    
T  41212518 aatgatcgattgacacccttaatatgtatacccctttgtaccactctgaaaaatttaagttaaccaaatatat 41212446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 350
Target Start/End: Complemental strand, 33667516 - 33667455
Alignment:
Q  289 gacacccttaatgtgtataccctttggtataactctgtaaaatttcagttaaccaaatatat 350  Q
    |||||||||||| |||| || |||| |||  |||||| ||||||| ||||||||||||||||    
T  33667516 gacacccttaatatgtacactcttttgtaccactctgaaaaattttagttaaccaaatatat 33667455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 350
Target Start/End: Original strand, 28527221 - 28527292
Alignment:
Q  278 aatgatcggtagacacccttaatgtgtataccctttggtataactctgtaaaatttcagttaaccaaatatat 350  Q
    |||||| |||||||||||||||| |||| |||| || |||  ||| || |||||||||| |||||||||||||    
T  28527221 aatgataggtagacacccttaat-tgtacacccctttgtaccactttgaaaaatttcagctaaccaaatatat 28527292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 281 - 350
Target Start/End: Original strand, 35922613 - 35922682
Alignment:
Q  281 gatcggtagacacccttaatgtgtataccctttggtataactctgtaaaatttcagttaaccaaatatat 350  Q
    ||||||||||||| ||||||||||| | || || |||| |||||| |||||||||||||| |||||||||    
T  35922613 gatcggtagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaatcaaatatat 35922682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 278 - 350
Target Start/End: Original strand, 33958878 - 33958949
Alignment:
Q  278 aatgatcggtagacacccttaatgtgtataccctttggtataactctgtaaaatttcagttaaccaaatatat 350  Q
    |||||| |||||||||||||||| |||||| ||||| |||  |||||| ||||||||| ||||||||||||||    
T  33958878 aatgataggtagacacccttaatatgtatatccttt-gtaccactctgaaaaatttcacttaaccaaatatat 33958949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 286 - 350
Target Start/End: Complemental strand, 43262899 - 43262835
Alignment:
Q  286 gtagacacccttaatgtgtataccctttggtataactctgtaaaatttcagttaaccaaatatat 350  Q
    |||||||||||||||||||| |||| || |||  ||| || ||||||||||||||||||||||||    
T  43262899 gtagacacccttaatgtgtacacccctttgtactactttgaaaaatttcagttaaccaaatatat 43262835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 350
Target Start/End: Original strand, 22169366 - 22169431
Alignment:
Q  285 ggtagacacccttaatgtgtataccctttggtataactctgtaaaatttcagttaaccaaatatat 350  Q
    ||||||||||||||||||||| ||||| | |||| | | |  ||||||||||||||| ||||||||    
T  22169366 ggtagacacccttaatgtgtacaccctattgtatcatttttgaaaatttcagttaactaaatatat 22169431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 350
Target Start/End: Complemental strand, 13312799 - 13312738
Alignment:
Q  285 ggtagacacccttaatgtgtataccctttggtataactctgtaaaatttcagttaaccaaatatat 350  Q
    |||||||||||||||||||||    |||| |||  |||||| ||||||||||||||||| ||||||    
T  13312799 ggtagacacccttaatgtgta----cttttgtaccactctgaaaaatttcagttaaccatatatat 13312738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 350
Target Start/End: Complemental strand, 15221776 - 15221704
Alignment:
Q  278 aatgatcggtagacacccttaatgtgtataccctttggtataactctgtaaaatttcagttaaccaaatatat 350  Q
    |||||| || ||||||| |||||||||| || | || |||| | |||| ||||||||||||||| ||||||||    
T  15221776 aatgataggcagacacctttaatgtgtacactcctttgtatcattctgaaaaatttcagttaactaaatatat 15221704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 348
Target Start/End: Original strand, 7915602 - 7915670
Alignment:
Q  281 gatcggtagacacccttaatgtgtataccctttggtataactctg-taaaatttcagttaaccaaatat 348  Q
    |||||||||||||| |||||||||| ||||||| |||| ||||||  |||||||||||||| |||||||    
T  7915602 gatcggtagacacctttaatgtgtacacccttttgtatcactctgaaaaaatttcagttaatcaaatat 7915670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 350
Target Start/End: Complemental strand, 23595345 - 23595281
Alignment:
Q  286 gtagacacccttaatgtgtataccctttggtataactctgtaaaatttcagttaaccaaatatat 350  Q
    ||||||| ||||||| |||| ||||||| |||| |||||  ||||||||| ||||||||||||||    
T  23595345 gtagacaaccttaatatgtacacccttttgtattactctaaaaaatttcaattaaccaaatatat 23595281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 349
Target Start/End: Complemental strand, 2835174 - 2835103
Alignment:
Q  278 aatgatcggtagacacccttaatgtgtataccctttggtataactctgtaaaatttcagttaaccaaatata 349  Q
    |||||| |||||||| |||||||||||||| |  || |||  |||||| ||||||| |||||||||||||||    
T  2835174 aatgataggtagacagccttaatgtgtatatcaatttgtaccactctgaaaaatttaagttaaccaaatata 2835103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 287 - 350
Target Start/End: Original strand, 3222343 - 3222405
Alignment:
Q  287 tagacacccttaatgtgtataccctttggtataactctgtaaaatttcagttaaccaaatatat 350  Q
    ||||||||||||||||||| ||||||| |||| |||||  |||||||||  |||||||||||||    
T  3222343 tagacacccttaatgtgtacacccttt-gtattactcttaaaaatttcaaataaccaaatatat 3222405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 350
Target Start/End: Complemental strand, 9068620 - 9068545
Alignment:
Q  278 aatgatcggtagacaccc---ttaatgtgtataccctttggtataactctgtaaaatttcagttaaccaaatatat 350  Q
    ||||||||||||||| ||   |||||||||| ||||||| |||  |||||| ||||||| |||||| |||||||||    
T  9068620 aatgatcggtagacatccttattaatgtgtacacccttttgtaccactctgaaaaattttagttaatcaaatatat 9068545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 350
Target Start/End: Complemental strand, 11108280 - 11108211
Alignment:
Q  281 gatcggtagacacccttaatgtgtataccctttggtataactctgtaaaatttcagttaaccaaatatat 350  Q
    |||| |||||||||||||||||||||| | ||| |||| | |||  |||| |||| ||||||||||||||    
T  11108280 gatcagtagacacccttaatgtgtatatctttttgtattattctaaaaaaattcaattaaccaaatatat 11108211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 350
Target Start/End: Original strand, 30056030 - 30056095
Alignment:
Q  285 ggtagacacccttaatgtgtataccctttggtataactctgtaaaatttcagttaaccaaatatat 350  Q
    |||||||||| ||||||| ||  ||| || ||| ||||||  ||||||||||||||||||||||||    
T  30056030 ggtagacacctttaatgtatactcccctttgtacaactctaaaaaatttcagttaaccaaatatat 30056095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 278 - 350
Target Start/End: Original strand, 1966732 - 1966803
Alignment:
Q  278 aatgatcggtagacacccttaatgtgtataccctttggtataactctgtaaaatttcagttaaccaaatatat 350  Q
    |||||| |||||||||||||| ||| || ||||||| |||  |||||| ||||||||||||||||||||||||    
T  1966732 aatgataggtagacacccttactgtatacacccttttgtaccactctg-aaaatttcagttaaccaaatatat 1966803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 350
Target Start/End: Original strand, 16583505 - 16583570
Alignment:
Q  285 ggtagacacccttaatgtgtataccctttggtataactctgtaaaatttcagttaaccaaatatat 350  Q
    ||||||||||||||||| ||| | || || |||  |||||  ||||||||||||||||||||||||    
T  16583505 ggtagacacccttaatgcgtacatccctttgtaccactctcgaaaatttcagttaaccaaatatat 16583570  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 350
Target Start/End: Complemental strand, 19596995 - 19596923
Alignment:
Q  278 aatgatcggtagacacccttaatgtgtataccctttggtataactctgtaaaatttcagttaaccaaatatat 350  Q
    |||||| ||||||| ||||||||||||| | ||||| |||    | || ||||||||||||||||||||||||    
T  19596995 aatgataggtagacgcccttaatgtgtacatccttttgtacccttttggaaaatttcagttaaccaaatatat 19596923  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 285 - 350
Target Start/End: Complemental strand, 9710918 - 9710853
Alignment:
Q  285 ggtagacacccttaatgtgtataccctttggtataactctgtaaaatttcagttaaccaaatatat 350  Q
    |||||| ||||||||| |||| |||| || |||  |||||| ||||||||||||||||||||||||    
T  9710918 ggtagaaacccttaatatgtacacccctttgtaccactctgaaaaatttcagttaaccaaatatat 9710853  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 277 - 350
Target Start/End: Complemental strand, 19280410 - 19280337
Alignment:
Q  277 aaatgatcggtagacacccttaatgtgtataccctttggtataactctgtaaaatttcagttaaccaaatatat 350  Q
    ||||||| ||||||||||||||||||||| |||| || |||  |||||| ||| ||| |||||| |||||||||    
T  19280410 aaatgataggtagacacccttaatgtgtacacccgtttgtaccactctgaaaatttttagttaatcaaatatat 19280337  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 350
Target Start/End: Original strand, 3823561 - 3823625
Alignment:
Q  286 gtagacacccttaatgtgtataccctttggtataactctgtaaaatttcagttaaccaaatatat 350  Q
    |||||||||||||||||||| |||| || |||  |||||  |||||||||||||||||| |||||    
T  3823561 gtagacacccttaatgtgtacacccctttgtaccactctcgaaaatttcagttaaccaattatat 3823625  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 350
Target Start/End: Complemental strand, 11510147 - 11510076
Alignment:
Q  278 aatgatcggtagacacccttaatgtgtataccctttggtataactctgtaaaatttcagttaaccaaatatat 350  Q
    |||||| |||||||| |||||||||||||| ||||| ||| | ||||| ||||||||||||||  ||||||||    
T  11510147 aatgataggtagacatccttaatgtgtatatccttt-gtacacctctgaaaaatttcagttaaataaatatat 11510076  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 350
Target Start/End: Complemental strand, 33488448 - 33488376
Alignment:
Q  278 aatgatcggtagacacccttaatgtgtataccctttggtataactctgtaaaatttcagttaaccaaatatat 350  Q
    |||||| | |||||||| ||||||||||||| | ||  |||||||||| ||||||| ||||||| ||||||||    
T  33488448 aatgatagttagacacctttaatgtgtatactcatttatataactctgaaaaatttaagttaactaaatatat 33488376  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 285 - 344
Target Start/End: Original strand, 3785871 - 3785930
Alignment:
Q  285 ggtagacacccttaatgtgtataccctttggtataactctgtaaaatttcagttaaccaa 344  Q
    ||||||||||||||||||||| |||| || |||  |||||  ||||||||||||||||||    
T  3785871 ggtagacacccttaatgtgtacacccctttgtaccactctcgaaaatttcagttaaccaa 3785930  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 350
Target Start/End: Complemental strand, 3823863 - 3823791
Alignment:
Q  278 aatgatcggtagacacccttaatgtgtataccctttggtataactctgtaaaatttcagttaaccaaatatat 350  Q
    |||||| |||||||||||||||| |||  |||| || |||  |||| | |||||| |||||||||||||||||    
T  3823863 aatgataggtagacacccttaatatgttcacccgtttgtactactcagaaaaattccagttaaccaaatatat 3823791  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 350
Target Start/End: Complemental strand, 1251676 - 1251611
Alignment:
Q  285 ggtagacacccttaatgtgtataccctttggtataactctgtaaaatttcagttaaccaaatatat 350  Q
    |||||||| |||||||||||| |||| || |||  |||||  ||||||||||||||| ||||||||    
T  1251676 ggtagacatccttaatgtgtacacccatttgtaccactctcgaaaatttcagttaactaaatatat 1251611  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 350
Target Start/End: Complemental strand, 24576260 - 24576195
Alignment:
Q  285 ggtagacacccttaatgtgtataccctttggtataactctgtaaaatttcagttaaccaaatatat 350  Q
    ||||||||||| ||||||||| |||| || |||  |||||  ||||||||| ||||||||||||||    
T  24576260 ggtagacacccgtaatgtgtacacccctttgtaccactctcgaaaatttcaattaaccaaatatat 24576195  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 350
Target Start/End: Complemental strand, 38607028 - 38606963
Alignment:
Q  285 ggtagacacccttaatgtgtataccctttggtataactctgtaaaatttcagttaaccaaatatat 350  Q
    |||||||| |||||||||||| |||| || ||| ||||||  ||||||||||||||| | ||||||    
T  38607028 ggtagacatccttaatgtgtacacccctttgtacaactctccaaaatttcagttaactacatatat 38606963  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 350
Target Start/End: Original strand, 38606725 - 38606797
Alignment:
Q  278 aatgatcggtagacacccttaatgtgtataccctttggtataactctgtaaaatttcagttaaccaaatatat 350  Q
    |||||| |||||||| ||||||| | || |||| || |||  |||||| ||||||||||||||| ||||||||    
T  38606725 aatgataggtagacatccttaatctttagacccctttgtaccactctgaaaaatttcagttaactaaatatat 38606797  T

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