View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14109_high_11 (Length: 344)
Name: NF14109_high_11
Description: NF14109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14109_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 8457542 - 8457204
Alignment:
| Q |
1 |
cgaagccactgaagccatcctatgatatcctttctcacaaaatcttgagtatggtcgatattgggaaacccgtggaaaatggccccagtgtttcgattac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8457542 |
cgaagccactgaagccatcctatgatatcctttctcacaaaatcttgagtatggtcgatattgggaaacccgtggaaaatggccccagtgtttcgattac |
8457443 |
T |
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| Q |
101 |
cctgaaataaacaacacaaagatacaacaggaggaacatgggattcaaattcgaataaaatgaaaatatatttgaatgtatcatatatgttaccagtcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
8457442 |
cctgaaataaacaacacaaagatacaacaggaggaacatgggattcaaattcgaataaaatgaaaatatatttggatgtatcatatatgttaccagtcca |
8457343 |
T |
|
| Q |
201 |
ccagtagatgatgttacagcacgttcatcccacggtaatgggattccatcaaaacgattatacatccctccatgtccttgggtggtaccaacacgatgat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8457342 |
ccagtagatgatgttacagcacgttcatcccacggtaatggaattccatcaaaacgattatacatccctccatgtccttgggtggtaccaacacgatgat |
8457243 |
T |
|
| Q |
301 |
tgataactatatcagccattgctctgactctctgctgct |
339 |
Q |
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| T |
8457242 |
tgataactatatcagccattgctctgactttctgttgct |
8457204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 6827788 - 6827925
Alignment:
| Q |
1 |
cgaagccactgaagccatcctatgatatcctttctcacaaaatcttgagtatggtcgatattgggaaacccgtggaaaatggccccagtgtttcgattac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6827788 |
cgaagccactgaagccatcctatgatatcctttctcacacaatcttgagtgtggtcgatattgggaaacccgtggaaaatggccccagtgtttcgattaa |
6827887 |
T |
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| Q |
101 |
cctgaaataaacaacacaaagatacaacaggaggaaca |
138 |
Q |
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|| ||||| |||||| |||||||||| || |||||||| |
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| T |
6827888 |
ccagaaatgaacaacgcaaagatacagcaagaggaaca |
6827925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 27964431 - 27964568
Alignment:
| Q |
1 |
cgaagccactgaagccatcctatgatatcctttctcacaaaatcttgagtatggtcgatattgggaaacccgtggaaaatggccccagtgtttcgattac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27964431 |
cgaagccactgaagccatcctatgatatcctttctcacacaatcttgagtgtggtcgatattgggaaacccgtggaaaatggccccagtgtttcgattaa |
27964530 |
T |
|
| Q |
101 |
cctgaaataaacaacacaaagatacaacaggaggaaca |
138 |
Q |
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|||||||| |||||| |||||||| | || |||||||| |
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| T |
27964531 |
cctgaaatgaacaacgcaaagatatagcaagaggaaca |
27964568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 3 - 99
Target Start/End: Complemental strand, 9822354 - 9822258
Alignment:
| Q |
3 |
aagccactgaagccatcctatgatatcctttctcacaaaatcttgagtatggtcgatattgggaaacccgtggaaaatggccccagtgtttcgatta |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
9822354 |
aagccactgaagccatcctatgatatcctttctcacaaaatcttgagtgtggtcgatatggggaaacccgtggaaaatggccccagtgtttcgatta |
9822258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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