View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14109_high_5 (Length: 508)
Name: NF14109_high_5
Description: NF14109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14109_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 20 - 490
Target Start/End: Complemental strand, 388439 - 387969
Alignment:
| Q |
20 |
aggactatggtttcgctgatataaaaataggattttatagtggtgaccatggtgatggtgagccatttgatggagttcttggtgtgttagctcattcgtt |
119 |
Q |
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| T |
388439 |
aggactatggtttcgctgatataaaaataggattttatagtggtgaccatggtgatggtgagccatttgatggagttcttggtgtgttagctcattcgtt |
388340 |
T |
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| Q |
120 |
ctcaccggagatcggaagacttcacctcgatgcagccgagacttgggcagttgatttcggtgtaacgaaatcggaggtggcaattgatttagagtcagtt |
219 |
Q |
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| T |
388339 |
ctcaccggagatcggaagacttcacctcgatgcagccgagacttgggcagttgatttcggtgtaacgaaatcggaggtggcaattgatttagagtcagtt |
388240 |
T |
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| Q |
220 |
gcaacacatgagattggacatttgttgggtttgtcacatagttctttgaaagaggcagtaatgtatccaagtttaaggccaagagataaaagagctgatt |
319 |
Q |
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| T |
388239 |
gcaacacatgagattggacatttgttgggtttgtcacatagttctttgaaagaggcagtaatgtatccaagtttaaggccaagagataaaagagctgatt |
388140 |
T |
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| Q |
320 |
tgaatattgatgatattaaaggtgtacaatctctttatggttctaatcctaattttagatctcagtggtcatcattggaatctgatatctccacaaatca |
419 |
Q |
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| T |
388139 |
tgaatattgatgatattaaaggtgtacaatctctttatggttctaatcctaattttagatctcagtggtcatcattggaatctgatatctccacaaatca |
388040 |
T |
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| Q |
420 |
tggtgcaaaatttggagttgacacttacaggttctctatgattgcttccattattgcaattgccctgtatt |
490 |
Q |
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| T |
388039 |
tggtgcaaaatttggagttgacacttacaggttctctatgattgcttccattattgcaattgccctgtatt |
387969 |
T |
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