View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14109_low_1 (Length: 988)

Name: NF14109_low_1
Description: NF14109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14109_low_1
NF14109_low_1
[»] chr3 (6 HSPs)
chr3 (207-658)||(8194582-8195032)
chr3 (450-821)||(8230678-8231051)
chr3 (17-137)||(8245541-8245662)
chr3 (841-982)||(12408487-12408627)
chr3 (841-933)||(47692453-47692545)
chr3 (841-916)||(20809289-20809364)
[»] chr1 (3 HSPs)
chr1 (843-982)||(51276505-51276643)
chr1 (841-937)||(7102404-7102500)
chr1 (843-932)||(52113335-52113424)
[»] chr4 (2 HSPs)
chr4 (841-982)||(44229824-44229964)
chr4 (860-939)||(26348869-26348948)
[»] chr7 (2 HSPs)
chr7 (18-137)||(12834244-12834362)
chr7 (843-932)||(15074407-15074496)
[»] chr6 (1 HSPs)
chr6 (843-982)||(10519543-10519681)
[»] chr5 (1 HSPs)
chr5 (849-932)||(38495313-38495396)


Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 207 - 658
Target Start/End: Original strand, 8194582 - 8195032
Alignment:
Q  207 acccattttacaaaa--tgttaataagactagtcctaataaacaaatcacattccaacacattaaaaacaatatctttgtaaatattcacaccctcatga 304  Q
    |||||||||||||||  | | |||||||||||||| |||| ||| ||||||||| ||| |||||||||| |||||||| |||||||||||||| ||||||    
T  8194582 acccattttacaaaacatatcaataagactagtcccaatatacacatcacattctaacccattaaaaactatatctttataaatattcacaccttcatga 8194681  T
Q  305 aaatctaaactaatagtacaagcacttaaaacaaagttaaatgtgtatctatcaggtttaagactaatttgtaagattgattgtgtggtacaagtttata 404  Q
    |||||||||  | ||||||||||  |||||||||||||||||||| || ||||||||||||||| ||||| |||     |||||||| ||||||||||||    
T  8194682 aaatctaaagcactagtacaagcctttaaaacaaagttaaatgtgaatttatcaggtttaagaccaatttttaa----aattgtgtgatacaagtttata 8194777  T
Q  405 gctttatggaagtgatgaaacttggaataagcattaatgaatgaattgtaaagaatgagagatgggtttttgatttggaggaaatgggtgtggatttgga 504  Q
    ||||||||||| |||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8194778 gctttatggaaatgatgaaatttggaataagctttgatgaatgaattgtaaagaatgagagatgggtttttgatttggaggaaatgggtgtggatttgga 8194877  T
Q  505 gaagagggtttatgtgtttgcatgaattaatgagttttaaggcagtga---ttgttgtgatgatgttgaattggaagaacatgacgagtgtgaagtgaat 601  Q
    ||||||||||||||| |||||||||||| ||||| ||||||| |||||   |||||||  || ||||||||||||| || |||| |||||||||||||||    
T  8194878 gaagagggtttatgtatttgcatgaatttatgag-tttaaggtagtgattgttgttgttctgttgttgaattggaaaaatatgatgagtgtgaagtgaat 8194976  T
Q  602 ttgaatgttttggaggtgaataatgtaatctttatgcttctcaatctcatttggtaa 658  Q
    ||||||||||| || || |||| | ||||||| |||||| | |||||||||| ||||    
T  8194977 ttgaatgtttt-gaagtaaatagtttaatcttcatgctttttaatctcattttgtaa 8195032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 450 - 821
Target Start/End: Complemental strand, 8231051 - 8230678
Alignment:
Q  450 ttgtaaagaatgagagatgggtttttgatttggaggaaatgggtgtggatttggagaagagggtttatgtgtttgcatgaattaatgagttttaaggcag 549  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||| |||| ||    
T  8231051 ttgtaaataatgagagatgggtttttgatttggaggaaatgggtgtggatttggagaagagggtttatatttttgcatgaattaataagttt-aaggtag 8230953  T
Q  550 tgattgttgtgat---------gatgttgaattggaagaacatgacgagtgtgaagtgaatttgaatgttttggaggtgaataatgtaatctttatgctt 640  Q
    | |||||||||||         | ||||| ||||||| ||||||| ||||||||||||||||||||||||||| | ||||||||||||||||| ||||||    
T  8230952 taattgttgtgattgttatgatgttgttggattggaaaaacatgatgagtgtgaagtgaatttgaatgttttg-atgtgaataatgtaatcttcatgctt 8230854  T
Q  641 ctcaatctcatttggtaatgaaatcacaaacaaacaaaaatgtgaattaatgaatgtatctactaatttgagtatgtaaaattgttgtgttgaaatgaag 740  Q
    ||||||||||||| | ||||||||||||||     |||  |||||||||||||||||| |||||| |||||||| ||||||||||||| |||||||||||    
T  8230853 ctcaatctcattttgcaatgaaatcacaaa-----aaacttgtgaattaatgaatgtacctactagtttgagtacgtaaaattgttgttttgaaatgaag 8230759  T
Q  741 ggtatagcactagttgggaaacatgggtcgttctaaaatggtgaactacatgtatcatgtactacctactagtattaggta 821  Q
    ||| ||||| |||||| |||||||| || | ||||||| ||||||||||||||||||||||||||||| ||||||| ||||    
T  8230758 ggtgtagcattagttgtgaaacatgagtgggtctaaaacggtgaactacatgtatcatgtactacctattagtatttggta 8230678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 8245541 - 8245662
Alignment:
Q  17 aaaattgaatctcaatatttcacgctactccaatcttt-acgatatcatattaattattcataaatatttcgtcgctaaaatgaaaatggccatttccat 115  Q
    |||||||||| |||||| |||| ||||||||||||||| | |||||||||||||||||||||||||||||| |   | |||| |||||||||||||||||    
T  8245541 aaaattgaatatcaatagttcaagctactccaatcttttaggatatcatattaattattcataaatatttcatacgtgaaataaaaatggccatttccat 8245640  T
Q  116 cataaaccaattggatatgtta 137  Q
    |||||||||| |||||||||||    
T  8245641 cataaaccaactggatatgtta 8245662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 841 - 982
Target Start/End: Original strand, 12408487 - 12408627
Alignment:
Q  841 aagagaaatgataaatgggcacacaatttgtgacacaaatacaacactgtggataaaacggtaattttggtgtgaagtatagggttaatttgataattcg 940  Q
    |||||||||||||||||| |||||||||||  ||||||||||||||   |||  ||||| ||||||||||||||||  ||||| ||||||   ||||||     
T  12408487 aagagaaatgataaatggacacacaatttgaaacacaaatacaacatcatgggcaaaacagtaattttggtgtgaaccataggattaattgagtaattcc 12408586  T
Q  941 acttcattcttcccatttttctttgtctttctccttcttctc 982  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  12408587 acttcattcttccca-ttttctttgtctttctccttcttctc 12408627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 841 - 933
Target Start/End: Original strand, 47692453 - 47692545
Alignment:
Q  841 aagagaaatgataaatgggcacacaatttgtgacacaaatacaacactgtggataaaacggtaattttggtgtgaagtatagggttaatttga 933  Q
    ||||| |||||||| | | |||| ||||||||||||||| |||||||  ||| |||||| |||||||||||||||| || |||| ||||||||    
T  47692453 aagagtaatgataagtagacacataatttgtgacacaaaaacaacaccatgggtaaaacagtaattttggtgtgaaatacagggataatttga 47692545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 841 - 916
Target Start/End: Complemental strand, 20809364 - 20809289
Alignment:
Q  841 aagagaaatgataaatgggcacacaatttgtgacacaaatacaacactgtggataaaacggtaattttggtgtgaa 916  Q
    |||||||||||||| | | ||||||||||  ||||||||||||||||  |||| |||||  |||||||||||||||    
T  20809364 aagagaaatgataagtagacacacaattttggacacaaatacaacaccatggacaaaacaataattttggtgtgaa 20809289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 2e-51; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 843 - 982
Target Start/End: Complemental strand, 51276643 - 51276505
Alignment:
Q  843 gagaaatgataaatgggcacacaatttgtgacacaaatacaacactgtggataaaacggtaattttggtgtgaagtatagggttaatttgataattcgac 942  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||  ||||||||||||||| |||||||||||||||||||||| |||||||||    
T  51276643 gagaaatgataaatggacacacaatttgtgacacaaatacaacactatgggcaaaacggtaattttgatgtgaagtatagggttaatttggtaattcgac 51276544  T
Q  943 ttcattcttcccatttttctttgtctttctccttcttctc 982  Q
    ||||||||||||| ||||||||||||||| ||||||||||    
T  51276543 ttcattcttccca-ttttctttgtctttccccttcttctc 51276505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 841 - 937
Target Start/End: Original strand, 7102404 - 7102500
Alignment:
Q  841 aagagaaatgataaatgggcacacaatttgtgacacaaatacaacactgtggataaaacggtaattttggtgtgaagtatagggttaatttgataat 937  Q
    ||||| |||||||| | | |||| |||||||||| |||| |||||||  |||||||||| |||||||||||||||| || |||| ||||||| ||||    
T  7102404 aagagtaatgataagtagacacataatttgtgacgcaaaaacaacaccatggataaaacagtaattttggtgtgaaatacagggataatttggtaat 7102500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 843 - 932
Target Start/End: Original strand, 52113335 - 52113424
Alignment:
Q  843 gagaaatgataaatgggcacacaatttgtgacacaaatacaacactgtggataaaacggtaattttggtgtgaagtatagggttaatttg 932  Q
    |||||||||||||| | ||||||||||  |||||| |||||||||  ||| |||||| |||||||| ||||||| || |||| |||||||    
T  52113335 gagaaatgataaatagacacacaattttagacacatatacaacaccatgggtaaaacagtaattttagtgtgaactagaggggtaatttg 52113424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 2e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 841 - 982
Target Start/End: Complemental strand, 44229964 - 44229824
Alignment:
Q  841 aagagaaatgataaatgggcacacaatttgtgacacaaatacaacactgtggataaaacggtaattttggtgtgaagtatagggttaatttgataattcg 940  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||||  |||  ||||| ||||||||||||||||  |||||||||||  | ||||||     
T  44229964 aagagaaatgataaatggacacacaatttgagacacaaatacaacaccatgggcaaaacagtaattttggtgtgaaccatagggttaatggggtaattcc 44229865  T
Q  941 acttcattcttcccatttttctttgtctttctccttcttctc 982  Q
    ||||||||||||||| |||||| ||||||||||||| |||||    
T  44229864 acttcattcttccca-ttttctctgtctttctccttattctc 44229824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 860 - 939
Target Start/End: Complemental strand, 26348948 - 26348869
Alignment:
Q  860 cacacaatttgtgacacaaatacaacactgtggataaaacggtaattttggtgtgaagtatagggttaatttgataattc 939  Q
    ||||||||||  ||||||||||||||||  ||| |||||| |||||||||||||||| || | || ||||||||||||||    
T  26348948 cacacaattttagacacaaatacaacaccatgggtaaaacagtaattttggtgtgaactagaagggtaatttgataattc 26348869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 4e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 12834244 - 12834362
Alignment:
Q  18 aaattgaatctcaatatttcacgctactccaatctttacgatatcatattaattattcataaatatttcgtc-gctaaaatgaaaatggccatttccatc 116  Q
    |||||||||||||||| |||| ||| || ||||||||| |||  ||||||||||||| ||| |||||||||  |||||||| |||||||||||||  |||    
T  12834244 aaattgaatctcaatagttcaagctgcttcaatctttaggat--catattaattatttatatatatttcgtatgctaaaataaaaatggccatttttatc 12834341  T
Q  117 ataaaccaattggatatgtta 137  Q
    |||||| || |||||||||||    
T  12834342 ataaacaaactggatatgtta 12834362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 843 - 932
Target Start/End: Complemental strand, 15074496 - 15074407
Alignment:
Q  843 gagaaatgataaatgggcacacaatttgtgacacaaatacaacactgtggataaaacggtaattttggtgtgaagtatagggttaatttg 932  Q
    |||||||||||||| | ||||||||||  |||||| |||||||||  |||  ||||| |||||||||||||||| || |||| |||||||    
T  15074496 gagaaatgataaatagacacacaattttagacacatatacaacaccatgggcaaaacagtaattttggtgtgaactagaggggtaatttg 15074407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 843 - 982
Target Start/End: Original strand, 10519543 - 10519681
Alignment:
Q  843 gagaaatgataaatgggcacacaatttgtgacacaaatacaacactgtggataaaacggtaattttggtgtgaagtatagggttaatttgataattcgac 942  Q
    |||||||||||| | | |||| |||||  ||||||||||||||||  |||  ||||| || ||||||||||||| || |||| ||||||| || ||| |     
T  10519543 gagaaatgataattagacacataattttggacacaaatacaacaccatgggcaaaacagtcattttggtgtgaactagaggggtaatttggtagttccat 10519642  T
Q  943 ttcattcttcccatttttctttgtctttctccttcttctc 982  Q
    | | ||||||||  ||||||||| ||||||| ||||||||    
T  10519643 tcccttcttccc-cttttctttgcctttctctttcttctc 10519681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 849 - 932
Target Start/End: Original strand, 38495313 - 38495396
Alignment:
Q  849 tgataaatgggcacacaatttgtgacacaaatacaacactgtggataaaacggtaattttggtgtgaagtatagggttaatttg 932  Q
    |||||||| | ||||||||||  |||||| |||||||||  |||  ||||| |||||||||||||||| || |||| |||||||    
T  38495313 tgataaatagacacacaattttagacacatatacaacaccatgggcaaaacagtaattttggtgtgaactagaggggtaatttg 38495396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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