View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14109_low_11 (Length: 395)
Name: NF14109_low_11
Description: NF14109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14109_low_11 |
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| [»] scaffold0364 (1 HSPs) |
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| [»] scaffold0037 (1 HSPs) |
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Alignment Details
Target: scaffold0364 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: scaffold0364
Description:
Target: scaffold0364; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 10 - 379
Target Start/End: Original strand, 9063 - 9432
Alignment:
| Q |
10 |
agggaaagagttgatagaatcttgtgtgatatgcaaaggctatctgtaaaacctcaaaatcagtttctcaacagctggttcaaggaagtcatcaagaata |
109 |
Q |
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| T |
9063 |
agggaaagagttgatagaatcttgtgtgatacgcaaaggctatctgtaaaagctcaaaatcagtctctaaacagctggttcaaggaagtcatcaagaata |
9162 |
T |
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| Q |
110 |
tggaagaaacggaagtcataaggaacaagttatacatatcagactctccattctttctggatgcctcttcaatcatatcttcatttgtcaaagaggatct |
209 |
Q |
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| T |
9163 |
tggaagaaacggaagtcataaggaacaagttatacatatcagactctccattcttcctggatgcctcttcagtcatatcctcatctgtcaaagaggatct |
9262 |
T |
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| Q |
210 |
gaacatttcttggttgactcggctgcatgtcacgcctcggattccaattattgagcaactgaagaaaccagagcttgttgaagataaaagagttgagaaa |
309 |
Q |
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| T |
9263 |
gaacatttcttggttgactcggctgcatggcaagcctcagattccgattattgagcaactgaagaaaccagagcctgttgaagatataagagttgagaaa |
9362 |
T |
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| Q |
310 |
ttggagcaagaattgtttgagcagaagatgttgtctgaaaaatttaagagacaaatgtcagagataaaag |
379 |
Q |
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| T |
9363 |
ttggagcaagaattgtttgagcagaagatgttgtctgaaaaatttaagagacaaatgtcagagataaaag |
9432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 128; Significance: 5e-66; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 32 - 379
Target Start/End: Original strand, 19886915 - 19887262
Alignment:
| Q |
32 |
tgtgtgatatgcaaaggctatctgtaaaacctcaaaatcagtttctcaacagctggttcaaggaagtcatcaagaatatggaagaaacggaagtcataag |
131 |
Q |
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| T |
19886915 |
tgtgtgacttgcaaaggctatccattgaagctcaaaatcagtctctcaacaactggtttaaggaagttatcaagagtatggaagcagtggaagtcagaag |
19887014 |
T |
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| Q |
132 |
gaacaagttatacatatcagactctccattctttctggatgcctcttcaatcatatcttcatttgtcaaagaggatctgaacatttcttggttgactcgg |
231 |
Q |
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| T |
19887015 |
gaacatattttacatctcagactctccattctttctagatgcctcttcaatcatcacttcaactatcaaagtggatctgaaactttcttggttaactaag |
19887114 |
T |
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| Q |
232 |
ctgcatgtcacgcctcggattccaattattgagcaactgaagaaaccagagcttgttgaagataaaagagttgagaaattggagcaagaattgtttgagc |
331 |
Q |
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| T |
19887115 |
cttcatgtcaagccacaaattccaatccttgagaaactgaagaagtcagagtctgtagaagacaaaagggttgagaaattagagcaagaattgtttgagc |
19887214 |
T |
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| Q |
332 |
agaagatgttgtctgaaaaatttaagagacaaatgtcagagataaaag |
379 |
Q |
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| T |
19887215 |
agaagatgctgtctgaaaacttgaagggacaaatggctgagatgaaag |
19887262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 56 - 229
Target Start/End: Original strand, 14355973 - 14356146
Alignment:
| Q |
56 |
taaaacctcaaaatcagtttctcaacagctggttcaaggaagtcatcaagaatatggaagaaacggaagtcataaggaacaagttatacatatcagactc |
155 |
Q |
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||||| |||||||||||| ||| | || ||||| |||||||||||||||| |||||||| | | |||||| |||||||| || ||||| |||||||| |
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| T |
14355973 |
taaaagctcaaaatcagtctcttagcaagtggtttaaggaagtcatcaagagtatggaagcagtgcaagtcagaaggaacatattgtacatctcagactc |
14356072 |
T |
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| Q |
156 |
tccattctttctggatgcctcttcaatcatatcttcatttgtcaaagaggatctgaacatttcttggttgactc |
229 |
Q |
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| T |
14356073 |
tccattcttcttagatgcctcttcaatcatcacttcatctgttagagaggatctgaatacttcttggttgactc |
14356146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 366
Target Start/End: Original strand, 14356204 - 14356280
Alignment:
| Q |
290 |
aagataaaagagttgagaaattggagcaagaattgtttgagcagaagatgttgtctgaaaaatttaagagacaaatg |
366 |
Q |
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|||| ||||||||| ||||| | ||||||||| ||||||| |||||||||||| ||||| || |||||||||||| |
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| T |
14356204 |
aagacaaaagagttaagaaacttgagcaagaactgtttgatcagaagatgttgactgaagctttgaagagacaaatg |
14356280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 185
Target Start/End: Complemental strand, 88404 - 88232
Alignment:
| Q |
13 |
gaaagagttgatagaatcttgtgtgatatgcaaaggctatctgtaaaacctcaaaatcagtttctcaacagctggttcaaggaagtcatcaagaatatgg |
112 |
Q |
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|||||||| |||| | |||| |||||| ||||||| |||||| || |||||||||||| ||||||| || ||| | || || || |||| |||| |
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| T |
88404 |
gaaagagtagataaagtcttatgtgatctgcaaagactatctaatgaagctcaaaatcagtcactcaacaactagtttcaagaggttataaagagtatga |
88305 |
T |
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| Q |
113 |
aagaaacggaagtcataaggaacaagttatacatatcagactctccattctttctggatgcctcttcaatcat |
185 |
Q |
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| T |
88304 |
aagaagtggaagtcaaaagaaacagattatacatctcagactctccattctttatggatgcttcatcaatcat |
88232 |
T |
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