View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14109_low_13 (Length: 332)
Name: NF14109_low_13
Description: NF14109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14109_low_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 4314760 - 4314442
Alignment:
| Q |
1 |
gcttcatctagatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgatgtttggaccgaggattatgacgcttggaattcactttta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4314760 |
gcttcatctagatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgatgtttggaccgaggattatgacgcttggaattcactttta |
4314661 |
T |
|
| Q |
101 |
agacctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaagttgcttctatggtacaaacttttcaaggttactctcttg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4314660 |
agacctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaagttgcttgtatggtacaaacttttcaaggttactctcttg |
4314561 |
T |
|
| Q |
201 |
agcaattgtctgatgaagattgttggtcagtgtttggaagtcatgcatgcctttctccaaaagaatacactgagaatatggatctccaaataattggcaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4314560 |
agcaattgtctgatgaagattgttggtcagtgtttggaaatcatgcatgcctttctccaaaagaatacactgagaatatggatcttcaaataattggcaa |
4314461 |
T |
|
| Q |
301 |
agagattgctagaaaatgt |
319 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
4314460 |
agagattgctagaaaatgt |
4314442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 4305898 - 4305580
Alignment:
| Q |
1 |
gcttcatctagatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgatgtttggaccgaggattatgacgcttggaattcactttta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||| || |||||| |
|
|
| T |
4305898 |
gcttcatctagatttgaaggaaaaactggccggaaagaagttcttaattgttttggatgacgtttggactgaggattatgatgcttggaaatccctttta |
4305799 |
T |
|
| Q |
101 |
agacctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaagttgcttctatggtacaaacttttcaaggttactctcttg |
200 |
Q |
| |
|
|| |||||||| | | || |||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4305798 |
aggcctcttcagtacagtgacaaaggaagtaaaattcttgtaacaacccgtattaaaaaagttgcttctatgctacaaacttttcaaggttactctcttg |
4305699 |
T |
|
| Q |
201 |
agcaattgtctgatgaagattgttggtcagtgtttggaagtcatgcatgcctttctccaaaagaatacactgagaatatggatctccaaataattggcaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| || |||||||||||||||| |||| | | || |||||| ||||| ||||||| ||||||||| |
|
|
| T |
4305698 |
agcaattgtctgatgaagattgttggtctgtgtttgaaaaccatgcatgcctttctctaaaacactccattgagaaaatggaactccaaaaaattggcaa |
4305599 |
T |
|
| Q |
301 |
agagattgctagaaaatgt |
319 |
Q |
| |
|
||||||| |||||||||| |
|
|
| T |
4305598 |
agagattattagaaaatgt |
4305580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 4253725 - 4254044
Alignment:
| Q |
1 |
gcttcatctagatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgatgtttggaccgaggattatgacgcttggaattcactttta |
100 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||| |
|
|
| T |
4253725 |
gcttcatcgtgatttgaaggaaaaactgactggaaaaaagttcttaattgttttggatgatgtatggaccgaggattatgacagctggaattctctttta |
4253824 |
T |
|
| Q |
101 |
agacctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaagttgcttctatggtacaaacttttcaaggttact-ctctt |
199 |
Q |
| |
|
|| |||||||| | || | | ||||| |||||||||||||||||| || | | ||||||||||||||||||| ||||||||||||||||| | ||||| |
|
|
| T |
4253825 |
aggcctcttcaatacggggctaagggaaataaaattcttgtaacaactcgtattgaaaaagttgcttctatggtccaaacttttcaaggttaattctctt |
4253924 |
T |
|
| Q |
200 |
gagcaattgtctgatgaagattgttggtcagtgtttggaagtcatgcatgcctttctccaaaagaatacactgagaatatggatctccaaataattggca |
299 |
Q |
| |
|
|| |||| |||||||||||||||||||| ||||||| || |||||||||||||||||| ||||| ||||||||| ||||||||||||| |||||||| |
|
|
| T |
4253925 |
gatgaattatctgatgaagattgttggtcggtgtttgcaaaccatgcatgcctttctccagaagaaaccactgagaacatggatctccaaaaaattggca |
4254024 |
T |
|
| Q |
300 |
aagagattgctagaaaatgt |
319 |
Q |
| |
|
||||||||| |||||||||| |
|
|
| T |
4254025 |
aagagattgttagaaaatgt |
4254044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 11 - 319
Target Start/End: Original strand, 4246617 - 4246925
Alignment:
| Q |
11 |
gatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgatgtttggaccgaggattatgacgcttggaattcacttttaagacctcttc |
110 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||| ||||||||||| |||||||||| | |||||||| || ||||||||| ||| | | ||||||| |
|
|
| T |
4246617 |
gatttgaaggaaaaactgactggaaaaaagttcttgattgttttggacgatgtttggatcaaggattataacagttggaattctcttatgatgcctcttc |
4246716 |
T |
|
| Q |
111 |
atgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaagttgcttctatggtacaaacttttcaaggttactctcttgagcaattgtc |
210 |
Q |
| |
|
| | || | | |||||| ||||||||||||||||| || ||| | ||||||||||||||||| ||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
4246717 |
aatacggagctaagggaagcaaaattcttgtaacaacgcgtagtgataaagttgcttctatggtccaaacttttcaaggttattctcttgagaaattgtc |
4246816 |
T |
|
| Q |
211 |
tgatgaagattgttggtcagtgtttggaagtcatgcatgcctttctccaaaagaatacactgagaatatggatctccaaataattggcaaagagattgct |
310 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||| || || ||| ||| ||||| | ||||||||||| || ||| | |||||||| | |
|
|
| T |
4246817 |
tgatgaagattgttggtcagtgtttgcaatccatgcatgcctttcacccgaacaatccaccgagaagacggatctccaaaaaactggtagagagattgtt |
4246916 |
T |
|
| Q |
311 |
agaaaatgt |
319 |
Q |
| |
|
||||||||| |
|
|
| T |
4246917 |
agaaaatgt |
4246925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 41933169 - 41933487
Alignment:
| Q |
1 |
gcttcatctagatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgatgtttggaccgaggattatgacgcttggaattcactttta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||| | ||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
41933169 |
gcttcatctagatttgaaggaaaaactgtccggaaagaagttcttaattgttttagatgatttctggaccgaggattatgatgcttggaattctctttta |
41933268 |
T |
|
| Q |
101 |
agacctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaagttgcttctatggtacaaacttttcaaggttactctcttg |
200 |
Q |
| |
|
|| |||||||| |||| |||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41933269 |
aggcctcttcaatatggtaccaagggaagtaaaattcttgtaacaacccatattaaaaaagttgcttctatggtacaaacttttcaaggttactctcttg |
41933368 |
T |
|
| Q |
201 |
agcaattgtctgatgaagattgttggtcagtgtttggaagtcatgcatgcctttctccaaaagaatacactgagaatatggatctccaaataattggcaa |
300 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||| || ||||| || ||| ||||| |||||| | |||||| ||||||||||||| ||||||||| |
|
|
| T |
41933369 |
agcaattgtctgaagaagattgttggtccgtgtttgcaaaccatgcctgtcttcctccagaagaatcctttgagaaaatggatctccaaaaaattggcaa |
41933468 |
T |
|
| Q |
301 |
agagattgctagaaaatgt |
319 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
41933469 |
agagattgttagaaaatgt |
41933487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 3 - 290
Target Start/End: Complemental strand, 34802834 - 34802547
Alignment:
| Q |
3 |
ttcatctagatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgatgtttggaccgaggattatgacgcttggaattcacttttaag |
102 |
Q |
| |
|
|||||| |||||||||||| || |||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||| ||||||| ||| |||| |
|
|
| T |
34802834 |
ttcatcaagatttgaaggagaagttggcgggaaagaagttcttaattgtattggatgatgtctggactgaggattatgacagttggaatattcttataag |
34802735 |
T |
|
| Q |
103 |
acctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaagttgcttctatggtacaaacttttcaaggttactctcttgag |
202 |
Q |
| |
|
||| |||| || || | |||||||||||||||||||||||| | | | |||| |||||| ||||||| |||||||||||| |||| |||| || |
|
|
| T |
34802734 |
gccttttcaatgcggaactaaaggaagtaaaattcttgtaacaacctgtattgaaaatgttgctactatggtccaaacttttcaaccttaccatcttaag |
34802635 |
T |
|
| Q |
203 |
caattgtctgatgaagattgttggtcagtgtttggaagtcatgcatgcctttctccaaaagaatacactgagaatatggatctccaaa |
290 |
Q |
| |
|
||||||||||||||||||||||||||| || | || |||||||| ||||||||| || ||| |||||||||||||| |||||| |
|
|
| T |
34802634 |
atattgtctgatgaagattgttggtcagttttcgcaaaccatgcatgtctttctccagaaaaatcttctgagaatatggatatccaaa |
34802547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University