View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14109_low_14 (Length: 330)
Name: NF14109_low_14
Description: NF14109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14109_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 16 - 317
Target Start/End: Original strand, 37848669 - 37848970
Alignment:
| Q |
16 |
aagaactagctatagcagtagaattatcacacacttgttgattatttcctttttgcatggtgctactgctcttaactatgatggtttgactctgttgtca |
115 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37848669 |
aagaactagctatagcagtagaattatcacacacttgttgactatttcctttttgcatggtgctactgctcttaactatgatggtttgactctgttgtca |
37848768 |
T |
|
| Q |
116 |
ctcatgacagactggaccattgttcctcctatcatcgactctagctggaatccttctgattccaatccatgctcatgggttggtgttcgatgtgaccatg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37848769 |
ctcatgacagactggaccattgttcctcctatcatcgactctagctggaatccttctgattccaatccatgctcatgggttggtgttcgatgtgaccatg |
37848868 |
T |
|
| Q |
216 |
ccaacaatttaatttcccttaacctcactagtcaagggatttttggtcggcttggaccagaaattggaaatctttatcatttgcagaaccttttgttgtt |
315 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
37848869 |
ccaacaatttaatttcccttaacctccctagtcaagggatttttggtcggcttggaccagaaataggaaatctttatcatttacagaaccttttgttgtt |
37848968 |
T |
|
| Q |
316 |
tg |
317 |
Q |
| |
|
|| |
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|
| T |
37848969 |
tg |
37848970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 32 - 307
Target Start/End: Original strand, 37840929 - 37841204
Alignment:
| Q |
32 |
agtagaattatcacacacttgttgattatttcctttttgcatggtgctactgctcttaactatgatggtttgactctgttgtcactcatgacagactgga |
131 |
Q |
| |
|
||||||||||||| || |||||||||| ||||||| |||||||||| | ||| |||| | |||||| |||||||||||||||||| |||| |||||| |
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| T |
37840929 |
agtagaattatcaaactcttgttgattgtttccttcttgcatggtggttttgcacttaccactgatgggttgactctgttgtcactcttgactcactgga |
37841028 |
T |
|
| Q |
132 |
ccattgttcctcctatcatcgactctagctggaatccttctgattccaatccatgctcatgggttggtgttcgatgtgaccatgccaacaatttaatttc |
231 |
Q |
| |
|
|| ||||||||||| ||||| ||||||| ||||| |||||||||| | ||||||||||||||||||||||| |||||||||| |||||||| | ||||| |
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| T |
37841029 |
cctttgttcctcctctcatcaactctagttggaaagcttctgattcaattccatgctcatgggttggtgttcaatgtgaccataccaacaatgtcatttc |
37841128 |
T |
|
| Q |
232 |
ccttaacctcactagtcaagggatttttggtcggcttggaccagaaattggaaatctttatcatttgcagaacctt |
307 |
Q |
| |
|
| |||| ||||||| || |||||| |||||| |||||||||||||||||||| ||||||| |||||||||||| |
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|
| T |
37841129 |
cattaatctcactaaccatgggattcttggtcaacttggaccagaaattggaaacttttatcacttgcagaacctt |
37841204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 28 - 315
Target Start/End: Original strand, 37829599 - 37829889
Alignment:
| Q |
28 |
tagcagtagaattatcacacacttgttg---attatttcctttttgcatggtgctactgctcttaactatgatggtttgactctgttgtcactcatgaca |
124 |
Q |
| |
|
|||||||| |||||||||| ||||||| ||||||||||| || |||||||||||||||||| || ||||||||||||| || |||||||| ||||| |
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|
| T |
37829599 |
tagcagtaaaattatcacaatcttgttgtcgattatttccttcttctatggtgctactgctcttacctctgatggtttgactttgatgtcactcttgaca |
37829698 |
T |
|
| Q |
125 |
gactggaccattgttcctcctatcatcgactctagctggaatccttctgattccaatccatgctcatgggttggtgttcgatgtgaccatgccaacaatt |
224 |
Q |
| |
|
|||||| |||||||||| | ||| ||||||| ||||| ||||||||||| |||||||||||||||||||||||| |||||||||| | | ||| |
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|
| T |
37829699 |
cgttggacctttgttcctccgctaatcaactctagttggaaggcttctgattccgatccatgctcatgggttggtgttcaatgtgaccatacttataatg |
37829798 |
T |
|
| Q |
225 |
taatttcccttaacctcactagtcaagggatttttggtcggcttggaccagaaattggaaatctttatcatttgcagaaccttttgttgtt |
315 |
Q |
| |
|
| |||||||||| ||||||| |||| |||||| |||||| ||||||||||||||||| || |||||||| |||||||||||||||||||| |
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|
| T |
37829799 |
tcatttcccttagcctcactggtcatgggattattggtcaacttggaccagaaattggtaacctttatcacttgcagaaccttttgttgtt |
37829889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 317
Target Start/End: Original strand, 37835292 - 37835595
Alignment:
| Q |
17 |
agaactagctatagcagtagaattatcacacacttgttgattatttcctttttgcatggtgctactgctcttaactatgatggtttgactctgttgtcac |
116 |
Q |
| |
|
|||||||| | |||||||| | | || |||| |||||||||||||||||| |||||| ||| | |||||| || |||||| |||| |||||||||| |
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|
| T |
37835292 |
agaactagttgtagcagtaaattcattacactcttgttgattatttccttcttgcatagtggtttgactcttacctctgatgggttgatactgttgtcac |
37835391 |
T |
|
| Q |
117 |
tcatgacagactggaccattgttcctcctatcatcgactctagctggaatccttctgattccaatccatgctcatgggttggtgttcgatgtgaccat-g |
215 |
Q |
| |
|
|||||||| ||||||| || |||||||| | ||| | |||| ||||||| | |||||||| | ||||||||||||||||||||||| ||||||| || |
|
|
| T |
37835392 |
tcatgacacactggacttttattcctccttttatcaaatctacctggaatgcctctgattcaactccatgctcatgggttggtgttcaatgtgactataa |
37835491 |
T |
|
| Q |
216 |
cca--acaatttaatttcccttaacctcactagtcaagggatttttggtcggcttggaccagaaattggaaatctttatcatttgcagaaccttttgttg |
313 |
Q |
| |
|
|| | ||| | ||||| |||||||||||||||| ||||||||||||| ||||| |||||||| || ||| |||| ||||||| |||| | ||| |
|
|
| T |
37835492 |
tcatcataatgtcatttctcttaacctcactagtcgtgggatttttggtcaacttgggacagaaattttgaaccttcatcacttgcagacccttgtattg |
37835591 |
T |
|
| Q |
314 |
tttg |
317 |
Q |
| |
|
|||| |
|
|
| T |
37835592 |
tttg |
37835595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 28 - 165
Target Start/End: Original strand, 37821357 - 37821497
Alignment:
| Q |
28 |
tagcagtagaattatcacacacttgttg---attatttcctttttgcatggtgctactgctcttaactatgatggtttgactctgttgtcactcatgaca |
124 |
Q |
| |
|
|||||||| |||||||||| ||||||| ||||||||||| || |||||||||||||||||| || ||||||||||||| || |||||||| ||||| |
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|
| T |
37821357 |
tagcagtaaaattatcacaatcttgttgtcgattatttccttcttctatggtgctactgctcttacctctgatggtttgactttgatgtcactcttgaca |
37821456 |
T |
|
| Q |
125 |
gactggaccattgttcctcctatcatcgactctagctggaa |
165 |
Q |
| |
|
|||||| |||||||||| | ||| ||||||| ||||| |
|
|
| T |
37821457 |
cgttggacctttgttcctccgctaatcaactctagttggaa |
37821497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 54 - 317
Target Start/End: Original strand, 36864093 - 36864356
Alignment:
| Q |
54 |
tgattatttcctttttgcatggtgctactgctcttaactatgatggtttgactctgttgtcactcatgacagactggaccattgttcctcctatcatcga |
153 |
Q |
| |
|
||||||||||||| |||||||||| | | ||||||||| | |||| |||||| ||||||||||| |||| |||||||| ||||||||||| ||||| | |
|
|
| T |
36864093 |
tgattatttccttcttgcatggtggttttactcttaactcttatgggttgactttgttgtcactcttgactcactggacctttgttcctcctctcatcaa |
36864192 |
T |
|
| Q |
154 |
ctctagctggaatccttctgattccaatccatgctcatgggttggtgttcgatgtgaccatgccaacaatttaatttcccttaacctcactagtcaaggg |
253 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||| |||||| ||||||||| ||| |||| | | ||||| ||||| |||||||| | |||||| | | |
|
|
| T |
36864193 |
ctctagctggaaggcttctgattccgatccatgttcatggtttggtgttcaatgcgaccgtaagcagaatttgatttcacttaaccttaatagtcatgag |
36864292 |
T |
|
| Q |
254 |
atttttggtcggcttggaccagaaattggaaatctttatcatttgcagaaccttttgttgtttg |
317 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||||| |||| ||||||||||||| |
|
|
| T |
36864293 |
atttttggtcaacttggaccagaaattggaaacctttatcatttggagaatcttttgttgtttg |
36864356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 51 - 211
Target Start/End: Original strand, 12281332 - 12281492
Alignment:
| Q |
51 |
tgttgattatttcctttttgcatggtgctactgctcttaactatgatggtttgactctgttgtcactcatgacagactggaccattgttcctcctatcat |
150 |
Q |
| |
|
|||||||||||||||| |||||| ||| | |||||| || | |||| |||| ||||||||| |||||||| ||||||| || |||||||| | || |
|
|
| T |
12281332 |
tgttgattatttccttcttgcatagtggtttgactcttacctctaatgggttgatactgttgtcattcatgacacactggacttttattcctccttttat |
12281431 |
T |
|
| Q |
151 |
cgactctagctggaatccttctgattccaatccatgctcatgggttggtgttcgatgtgac |
211 |
Q |
| |
|
| | || | ||||||| | |||||||| | |||||||||||||||||||||| ||||||| |
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|
| T |
12281432 |
caaatccacctggaatgcctctgattcaactccatgctcatgggttggtgtttaatgtgac |
12281492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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