View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14109_low_15 (Length: 326)

Name: NF14109_low_15
Description: NF14109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14109_low_15
NF14109_low_15
[»] chr4 (8 HSPs)
chr4 (53-275)||(27481728-27481949)
chr4 (53-182)||(27461673-27461810)
chr4 (2-124)||(27521560-27521671)
chr4 (135-181)||(27521706-27521752)
chr4 (2-41)||(27461836-27461875)
chr4 (2-41)||(27481975-27482014)
chr4 (2-41)||(18985936-18985975)
chr4 (53-91)||(18985872-18985910)
[»] chr5 (11 HSPs)
chr5 (53-196)||(1757817-1757958)
chr5 (62-128)||(29166788-29166854)
chr5 (62-129)||(29425110-29425176)
chr5 (195-261)||(1757716-1757782)
chr5 (53-103)||(27918457-27918507)
chr5 (192-266)||(29166684-29166758)
chr5 (2-41)||(29425180-29425219)
chr5 (2-39)||(1757986-1758023)
chr5 (53-92)||(29568668-29568707)
chr5 (142-181)||(29568733-29568772)
chr5 (53-92)||(29569976-29570015)
[»] chr3 (1 HSPs)
chr3 (53-128)||(25518264-25518339)


Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 53 - 275
Target Start/End: Complemental strand, 27481949 - 27481728
Alignment:
Q  53 aatttgaactttggttgtaaagtaagtgtgagtggcaaagagttatgaaaaaagagggatggtttgagtatatatattggaaagatggtatatgatgatt 152  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||    
T  27481949 aatttgagctttggttgtaaagtaagtgtgagtggcaaagagttatgaaaaaagaggtatggtttgagtatatatataggagagatggtatatgatgatt 27481850  T
Q  153 tgttgaggttttcaagggtaactgatttttgtaggtaggatatagagttagagacttcgagcgccgaggatcgaacccacgataactaattctcactgta 252  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  27481849 tgt-gaggttttcaagggtaactgatttttgtaggtaggatatagagttagagacttcgagcgccgaggatcgaacccatgataactaattctcactgta 27481751  T
Q  253 ccaatctctatatagtgtcgtag 275  Q
    ||||||||||| |||| ||||||    
T  27481750 ccaatctctatgtagtatcgtag 27481728  T

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Target: chr4; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 53 - 182
Target Start/End: Complemental strand, 27461810 - 27461673
Alignment:
Q  53 aatttgaactttggttgtaaagtaagtgtgagtggcaaagagttatgaaaaaagagggatggtttgag----------tatatatattggaaagatggta 142  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||| ||  ||||||||    
T  27461810 aatttgaactttgattgtaaagtaagtgtgagtggcaaagagttatgaaaaaagagggatggtttgagtgtatatatatatatatatagg--agatggta 27461713  T
Q  143 tatgatgatttgttgaggttttcaagggtaactgattttt 182  Q
    ||||||||| ||||||||||||||||||||| ||||||||    
T  27461712 tatgatgatctgttgaggttttcaagggtaattgattttt 27461673  T

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Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 2 - 124
Target Start/End: Original strand, 27521560 - 27521671
Alignment:
Q  2 gattcttgttgaatctgtaaatcacccattcttctgaatttaaaatctgtaaatttgaactttggttgtaaagtaagtgtgagtggcaaagagttatgaa 101  Q
    ||||||||||||||||||||||||||||||||||||||||        ||   |||    |||| |||||||||||||||||||||||||||||||||||    
T  27521560 gattcttgttgaatctgtaaatcacccattcttctgaatt--------gt---tttcttttttgattgtaaagtaagtgtgagtggcaaagagttatgaa 27521648  T
Q  102 aaaagagggatggtttgagtata 124  Q
    |||||||||||||||||||||||    
T  27521649 aaaagagggatggtttgagtata 27521671  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 181
Target Start/End: Original strand, 27521706 - 27521752
Alignment:
Q  135 agatggtatatgatgatttgttgaggttttcaagggtaactgatttt 181  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  27521706 agatggtatatgatgatctgttgaggttttcaagggtaactgatttt 27521752  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 27461875 - 27461836
Alignment:
Q  2 gattcttgttgaatctgtaaatcacccattcttctgaatt 41  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  27461875 gattcttgttgaatctgtaaatcacccattcttctgaatt 27461836  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 27482014 - 27481975
Alignment:
Q  2 gattcttgttgaatctgtaaatcacccattcttctgaatt 41  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  27482014 gattcttgttgaatctgtaaatcacccattcttctgaatt 27481975  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 18985975 - 18985936
Alignment:
Q  2 gattcttgttgaatctgtaaatcacccattcttctgaatt 41  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  18985975 gattcttgttgaatttgtaaatcacccattcttctgaatt 18985936  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 91
Target Start/End: Complemental strand, 18985910 - 18985872
Alignment:
Q  53 aatttgaactttggttgtaaagtaagtgtgagtggcaaa 91  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  18985910 aatttgaactttggtcgtaaagtaagtgtgagtggcaaa 18985872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 53 - 196
Target Start/End: Complemental strand, 1757958 - 1757817
Alignment:
Q  53 aatttgaactttggttgtaaagtaagtgtgagtggcaaagagttatgaaaaaagagggatggtttgagtatatatattggaaagatggtatatgatgatt 152  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||  ||||||||||||||||||    
T  1757958 aatttgaactttggttgtaaagtaagtgtgagtcgcaaagagttatgaacaaagagggatggtttgagtatatatatagg--agatggtatatgatgatt 1757861  T
Q  153 tgttgaggttttcaagggtaactgatttttgtaggtaggatata 196  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||    
T  1757860 tgttgagattttcaagggtaactgatttttgtatgtaggatata 1757817  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 62 - 128
Target Start/End: Complemental strand, 29166854 - 29166788
Alignment:
Q  62 tttggttgtaaagtaagtgtgagtggcaaagagttatgaaaaaagagggatggtttgagtatatata 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  29166854 tttggttgtaaagtaagtgtgagtggcaaagagttatgaaaaaagagggaaggttggagtatatata 29166788  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 62 - 129
Target Start/End: Complemental strand, 29425176 - 29425110
Alignment:
Q  62 tttggttgtaaagtaagtgtgagtggcaaagagttatgaaaaaagagggatggtttgagtatatatat 129  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||    
T  29425176 tttggttgtaaagtaagtgtgagtggcaaagagttatga-aaaagagggaaggtttgattatatatat 29425110  T

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Target: chr5; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 195 - 261
Target Start/End: Complemental strand, 1757782 - 1757716
Alignment:
Q  195 tagagttagagacttcgagcgccgaggatcgaacccacgataactaattctcactgtaccaatctct 261  Q
    |||||||| ||||||||  || |||||||||||||||||||||||||||||||| ||||||||||||    
T  1757782 tagagttaaagacttcggacgtcgaggatcgaacccacgataactaattctcaccgtaccaatctct 1757716  T

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Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 103
Target Start/End: Complemental strand, 27918507 - 27918457
Alignment:
Q  53 aatttgaactttggttgtaaagtaagtgtgagtggcaaagagttatgaaaa 103  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  27918507 aatttgaactttggttgcaaagtaagtctgagtggcaaagagttatgaaaa 27918457  T

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Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 266
Target Start/End: Complemental strand, 29166758 - 29166684
Alignment:
Q  192 atatagagttagagacttcgagcgccgaggatcgaacccacgataactaattctcactgtaccaatctctatata 266  Q
    ||||| |||||||||||||  ||| ||||||||||||||||||||||||| ||||| |||||| |||| ||||||    
T  29166758 atataaagttagagacttcaggcgtcgaggatcgaacccacgataactaactctcagtgtaccgatctttatata 29166684  T

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Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 29425219 - 29425180
Alignment:
Q  2 gattcttgttgaatctgtaaatcacccattcttctgaatt 41  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  29425219 gattcttgttgaatctgtaaatcacccattcttctgaatt 29425180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 1758023 - 1757986
Alignment:
Q  2 gattcttgttgaatctgtaaatcacccattcttctgaa 39  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1758023 gattcttgttgaatctgtaaatcacccattcttctgaa 1757986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 92
Target Start/End: Original strand, 29568668 - 29568707
Alignment:
Q  53 aatttgaactttggttgtaaagtaagtgtgagtggcaaag 92  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  29568668 aatttgaattttggttgtaaagtaagtgtgagtggcaaag 29568707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 181
Target Start/End: Original strand, 29568733 - 29568772
Alignment:
Q  142 atatgatgatttgttgaggttttcaagggtaactgatttt 181  Q
    |||||| |||||||||||||||||||| ||||||||||||    
T  29568733 atatgaagatttgttgaggttttcaagtgtaactgatttt 29568772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 92
Target Start/End: Original strand, 29569976 - 29570015
Alignment:
Q  53 aatttgaactttggttgtaaagtaagtgtgagtggcaaag 92  Q
    ||||||||||||||| ||||||| ||||||||||||||||    
T  29569976 aatttgaactttggtagtaaagttagtgtgagtggcaaag 29570015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 53 - 128
Target Start/End: Complemental strand, 25518339 - 25518264
Alignment:
Q  53 aatttgaactttggttgtaaagtaagtgtgagtggcaaagagttatgaaaaaagagggatggtttgagtatatata 128  Q
    |||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  25518339 aatttgaatttttgttgtaaagtaagtgtgagtggcaaagagttgtgaaaaaagagggaaggtttgagtatatata 25518264  T

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