View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14109_low_19 (Length: 261)
Name: NF14109_low_19
Description: NF14109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14109_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 20204641 - 20204895
Alignment:
| Q |
1 |
ctgagacttctgattgaagctgtgtcctgtgtccgacaccatacacatgtgattacgttcaattaattcattttgaaaagcttttatcagagtcggcgtg |
100 |
Q |
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| T |
20204641 |
ctgagacttctgattgaagctgtgtcctgtgtccgacaccatacacatgtgattacgttcaattaattcattttgaaaagcttttatcagagtcggcgtg |
20204740 |
T |
|
| Q |
101 |
tttgtgtcagtgttttatactattagttatctctttagcaccgatacatctgatcgaagacatgtccggtgtctaactctcacatgtgtgatcacataca |
200 |
Q |
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| T |
20204741 |
tttgtgtcagtgttttatactattagttatctctttagcaccgatacttctgatcgaagacatgtccggtgtgtgactctcacatgtgtgatcacataca |
20204840 |
T |
|
| Q |
201 |
attatgttattctctcaaattaccaccggtgttgatgttgtaattatcatctgtg |
255 |
Q |
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| T |
20204841 |
attatgttattttctcaaattacaaccggtgtcggtgttgtaactatcatctgtg |
20204895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 15086770 - 15086722
Alignment:
| Q |
21 |
tgtgtcctgtgtccgacaccatacacatgtgattacgttcaattaattca |
70 |
Q |
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| T |
15086770 |
tgtgtccggtgtccgacacca-acacatgtgattacgttcaaataattca |
15086722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 74
Target Start/End: Original strand, 585728 - 585759
Alignment:
| Q |
43 |
acacatgtgattacgttcaattaattcatttt |
74 |
Q |
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| T |
585728 |
acacatgtgattacgttcaattaattcatttt |
585759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 74
Target Start/End: Original strand, 18268013 - 18268044
Alignment:
| Q |
43 |
acacatgtgattacgttcaattaattcatttt |
74 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
18268013 |
acacatgtgattacgttcaattaattcatttt |
18268044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 74
Target Start/End: Original strand, 14782856 - 14782885
Alignment:
| Q |
45 |
acatgtgattacgttcaattaattcatttt |
74 |
Q |
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| T |
14782856 |
acatgtgattacgttcaattaattcatttt |
14782885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 13810568 - 13810517
Alignment:
| Q |
22 |
gtgtcctgtgtccgacaccatacacatgtgattacgttcaattaattcatttt |
74 |
Q |
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|||||| ||||| |||||| ||||||||||||||||||||| |||||||||| |
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| T |
13810568 |
gtgtccggtgtctgacaccg-acacatgtgattacgttcaataaattcatttt |
13810517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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