View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14109_low_21 (Length: 251)
Name: NF14109_low_21
Description: NF14109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14109_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 51548213 - 51547990
Alignment:
| Q |
18 |
attggttaggtaatggcattcttgatataatattacatgcttgtaaaactactgctgcatttccaaatatgtaatctatggtcccaaaaatatcacactc |
117 |
Q |
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| T |
51548213 |
attggttaggtaatggcattcttgatataatgttacatgcttgtaaaactactgctgcatttccaaatatgtaatctatggtcccaaaaatgtcacactc |
51548114 |
T |
|
| Q |
118 |
tctatagaattgtctaaatgagtgaacataaagtgtgtcttggtaaccatacattgcacatttgtaaaaagctgttacgtctgcattcactcttaatgca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
51548113 |
tctatagaattgtctaaatgagtgaacataaagtgtgtcttggtaaccatacattgcacatttgtaaaaagctgttacgtctgcgttcactcttaatgca |
51548014 |
T |
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| Q |
218 |
actgcttgatgcttctctgctcct |
241 |
Q |
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||||||||||||||||||| |||| |
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| T |
51548013 |
actgcttgatgcttctctggtcct |
51547990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 25 - 236
Target Start/End: Complemental strand, 19476639 - 19476428
Alignment:
| Q |
25 |
aggtaatggcattcttgatataatattacatgcttgtaaaactactgctgcatttccaaatatgtaatctatggtcccaaaaatatcacactctctatag |
124 |
Q |
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|||||||||||||||||||| || | ||| ||||||| |||||||| || || ||||||||| ||||||| ||||| |||| || || || | ||| |
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| T |
19476639 |
aggtaatggcattcttgatacgatgtcgcattcttgtaatactactgcggcgttaccaaatatgaaatctattgtcccgtaaatgtcgcattcgcggtag |
19476540 |
T |
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| Q |
125 |
aattgtctaaatgagtgaacataaagtgtgtcttggtaaccatacattgcacatttgtaaaaagctgttacgtctgcattcactcttaatgcaactgctt |
224 |
Q |
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|||||||| |||||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||||||| |||||||| ||||||||||||||||||| |
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| T |
19476539 |
aattgtctgaatgagtggacataaagtgtgtcttggtaaccataaattgcgcatttgtaaaatgctgttaaatctgcatttactcttaatgcaactgctt |
19476440 |
T |
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| Q |
225 |
gatgcttctctg |
236 |
Q |
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|||| ||||||| |
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| T |
19476439 |
gatgtttctctg |
19476428 |
T |
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