View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14109_low_22 (Length: 251)
Name: NF14109_low_22
Description: NF14109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14109_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 99 - 207
Target Start/End: Original strand, 20204499 - 20204607
Alignment:
| Q |
99 |
aggtgttgaggttaaggttggacaatctgtcaaagttgatcccaatgatctatgtgagggatacattcacatttctcaggttagaatttctttatgttat |
198 |
Q |
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| T |
20204499 |
aggtgttgaggttaaggttggacaatctgtcaaagttgatcccaatgatctatgtgaaggatacattcacatttctcaggttagaatttatttatgttat |
20204598 |
T |
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| Q |
199 |
ttccatact |
207 |
Q |
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||||||||| |
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| T |
20204599 |
ttccatact |
20204607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 99 - 203
Target Start/End: Original strand, 20199640 - 20199744
Alignment:
| Q |
99 |
aggtgttgaggttaaggttggacaatctgtcaaagttgatcccaatgatctatgtgagggatacattcacatttctcaggttagaatttctttatgttat |
198 |
Q |
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||||||||||||||||| ||||||||| || ||||||||||| ||||||| |||| ||||||||||||||||||||| || ||||||| |||||||||| |
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| T |
20199640 |
aggtgttgaggttaaggctggacaatcggttaaagttgatccaaatgatcaatgtacgggatacattcacatttctcaagtaagaatttgtttatgttat |
20199739 |
T |
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| Q |
199 |
ttcca |
203 |
Q |
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||||| |
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| T |
20199740 |
ttcca |
20199744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 20204401 - 20204434
Alignment:
| Q |
1 |
atgccattttttcttcttcatttcgttgcgatag |
34 |
Q |
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| T |
20204401 |
atgccattttttcttcttcatttcgttgcgatag |
20204434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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