View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14109_low_25 (Length: 238)
Name: NF14109_low_25
Description: NF14109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14109_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 20155687 - 20155474
Alignment:
| Q |
13 |
aatataagaaaacaaagttgatcactcaaaaa-actttactagt---ttttagtagattgatgctctataatatcttgaattaagcatgaaatgttgaag |
108 |
Q |
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| T |
20155687 |
aatataagaaaacaaagttgatcactcaaaaagactatactaatactttttagtagattgatgctctataatatcctgaattaagcatgaaatgttgaag |
20155588 |
T |
|
| Q |
109 |
taagaagagccttcatccacctctaaagtctttgtagccatgtttccaagttcttttgctctacacctcctcttttctccctctacacctccttccatac |
208 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20155587 |
taagaagaaccttcatccacctctaaagtctttgtagccatgtttccaagttcttttgctctacacctcctcttttctccctctacacctccttccatac |
20155488 |
T |
|
| Q |
209 |
acatctctataact |
222 |
Q |
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|||||||||||||| |
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| T |
20155487 |
acatctctataact |
20155474 |
T |
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