View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14109_low_3 (Length: 609)
Name: NF14109_low_3
Description: NF14109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14109_low_3 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 562; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 7 - 609
Target Start/End: Original strand, 47076390 - 47076992
Alignment:
| Q |
7 |
atactgacctctgataaagtgcaactcgcctctccaaggaaatcctgatcactcagtttcagtgtctgcatgaagtaacataacattcaaactttcagtt |
106 |
Q |
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| T |
47076390 |
atactgacctctgataaagtgcaactcgcctctccaaggaaatcctgatcactcagtttcagtgtctgcatgaagtaacataacattcaaactttcagtt |
47076489 |
T |
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| Q |
107 |
ttcaaatatataaacttcacaaataccattacaactttttattgcaaactaaaagaccctaatgctgaagttttttctttcaagaatttagcaggctata |
206 |
Q |
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| T |
47076490 |
ttcaaatatataaacttcacagataccattacaactttttattgcaaactaaaagaccctaatgctgaagttttttctttcaagaatttagcaggctata |
47076589 |
T |
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| Q |
207 |
agtaggccctgtattataccccaatctaaaacaatttatagtgaaattctcattgnnnnnnncagtatagggagaactcatgacttaattaatcataaaa |
306 |
Q |
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| T |
47076590 |
agtaggccctgtattttaccccaatctaaaacaatttatagtgaaattctgattgaaaaaaacagtatagggagaactcatgacttaattaatcataaaa |
47076689 |
T |
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| Q |
307 |
tgcttaaaatgcagagttattatatggttggtttacaaaccttggtgggaacacgatgatattttgtgtcaatgtcatacacatgaaacctgaaagatag |
406 |
Q |
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| T |
47076690 |
tgcttaaaatgcagagttattatatggttggtttacaaaccttggtgggaacacgatgatattttgtgtcaatgtcatacacatgaaacctgaaagatag |
47076789 |
T |
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| Q |
407 |
caaaatgagggggagagagttatatataggttaatcaatcaagtcacacagaagcctcataaatctcattgctatatctataaacaaagcacagcattta |
506 |
Q |
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| T |
47076790 |
caaaatgagggggagagagttatatataggttaatcaatcaagtcacacagaagcctcataaatctcattgctatatctataaacaaagcacatcattta |
47076889 |
T |
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| Q |
507 |
tgcaggaataggcacatgaaagatagatggaggataacttacacaagtggttgcaccatctcaaaatgaaatgcaatactaattttttctatccattctg |
606 |
Q |
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| T |
47076890 |
tgtaggaataggcacatgaaagatagatggaggataacttacacaagtggttgcaccatctcaaaatgaaatgcaatactaattttttctatccattctg |
47076989 |
T |
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| Q |
607 |
gat |
609 |
Q |
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| T |
47076990 |
gat |
47076992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 531 - 609
Target Start/End: Original strand, 47058892 - 47058970
Alignment:
| Q |
531 |
agatggaggataacttacacaagtggttgcaccatctcaaaatgaaatgcaatactaattttttctatccattctggat |
609 |
Q |
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| T |
47058892 |
agatgaaggatagcttacacaagtggttgcacaatctcgaaatgaaatgcaatgttaattttttctatccattctggat |
47058970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 372 - 425
Target Start/End: Original strand, 47058761 - 47058814
Alignment:
| Q |
372 |
gtgtcaatgtcatacacatgaaacctgaaagatagcaaaatgagggggagagag |
425 |
Q |
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| T |
47058761 |
gtgtcaatgtcatacacatgaaatctgaaagaaagcaaaataagggggagagag |
47058814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 2e-50; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 6 - 239
Target Start/End: Complemental strand, 18229764 - 18229528
Alignment:
| Q |
6 |
aatactgacctctgataaagtgcaactcgcctctccaaggaaatcctgatcactcagtttcagtgtctgcatgaagtaacataac--attcaaactttca |
103 |
Q |
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| T |
18229764 |
aatactgacctctgataaagtgcaacttgcctctccaaggaattcttgatcattcagttttagagtctgcatgaagtaacgtaacatattcaaacattcg |
18229665 |
T |
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| Q |
104 |
gttttcaaatatataaacttcacaaataccattacaactttttattgcaaact-aaaagaccctaatgctgaagttttttctttcaagaatttagcaggc |
202 |
Q |
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| T |
18229664 |
attttcaaatatataaacttcaccgacaccatcacggctttttattccaaactaaaaataccctatagttgaagttttttctatcaagagtttagcaggc |
18229565 |
T |
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| Q |
203 |
tataagtaggccctgtattataccccaatctaaaaca |
239 |
Q |
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| T |
18229564 |
tgcaagttagccttgtattatacccgaatctaaaaca |
18229528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 296 - 409
Target Start/End: Complemental strand, 18229502 - 18229389
Alignment:
| Q |
296 |
taatcataaaatgcttaaaatgcagagttattatatggttggtttacaaaccttggtgggaacacgatgatattttgtgtcaatgtcatacacatgaaac |
395 |
Q |
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| T |
18229502 |
taatcgtaaaatgtttaaaaggcagatttactatatgattggtttacaaaccttggtgggaacaccgtgatatgatgtgtcaatgtcatacacatgaaat |
18229403 |
T |
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| Q |
396 |
ctgaaagatagcaa |
409 |
Q |
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| T |
18229402 |
ctgaaagaaagcaa |
18229389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 544 - 609
Target Start/End: Complemental strand, 18229302 - 18229237
Alignment:
| Q |
544 |
cttacacaagtggttgcaccatctcaaaatgaaatgcaatactaattttttctatccattctggat |
609 |
Q |
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| T |
18229302 |
cttacacaagtggttgcacaatctcgaaatgaaatgcaatattaattttctctatccattctggat |
18229237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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