View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14109_low_4 (Length: 516)
Name: NF14109_low_4
Description: NF14109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14109_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 52 - 501
Target Start/End: Complemental strand, 30901063 - 30900615
Alignment:
| Q |
52 |
caaaagggaaaaatgtaacctgattttgaactcctaatagaataattattttgttagattttaattatttgctgacaaaacttctattaaaaaccatttt |
151 |
Q |
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||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
30901063 |
caaaagggaaaaatgtaacctgaatttgaattcctaatagaataattattttgttagattttaattatttgttgacaaaacttctattaaaaaccatttt |
30900964 |
T |
|
| Q |
152 |
ctttgagaatcgnnnnnnnngtatcatgatgaatcattggcctataaacacatgccatatgagattaatcaaaagctatcaattcgttaattttttatat |
251 |
Q |
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| T |
30900963 |
ctttgagaatcgaaaaaaaagtatcatga---atcattggcctataaacacatgccatatgagattaatcaaaagctatcaattcgttaattttttatat |
30900867 |
T |
|
| Q |
252 |
accaaagttaccgttcatacaaaaatggtggtgattttgtgaaaaatgtaattggcaatca----ttagttatgttgcaataagattgacggattagaca |
347 |
Q |
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||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
30900866 |
accaa-gttaccgttcttacaaaaatggtggtgattttgtgaaaaatgtaattggcaatcaatcattagttatgttgcaataagattgatggattagaca |
30900768 |
T |
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| Q |
348 |
aatgatcaacatttgctggtggataatcttgtcatgagaataataattgtcctctataagtacaggtaatcgaagcttaaaagcatccaaacaaatttaa |
447 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30900767 |
aatgatcaacatttgctggtggataatcttgtcatgagaataataattgtcctctataagtacaggtaatcgaagcttaaaagcatccaaacaaatttaa |
30900668 |
T |
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| Q |
448 |
aagacatgaaaaagatgaagaatatccaacaacgagtgaaacaaaagatagtga |
501 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30900667 |
aagacatg-aaaagatgaagaatatccaacaacgagtgaaacaaaagatagtga |
30900615 |
T |
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