View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14109_low_8 (Length: 453)

Name: NF14109_low_8
Description: NF14109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14109_low_8
NF14109_low_8
[»] chr1 (14 HSPs)
chr1 (14-434)||(12539309-12539728)
chr1 (107-165)||(38783096-38783154)
chr1 (107-165)||(45425507-45425565)
chr1 (108-165)||(16575084-16575141)
chr1 (109-141)||(8737403-8737435)
chr1 (115-163)||(25572511-25572559)
chr1 (101-152)||(13999007-13999058)
chr1 (106-152)||(2513635-2513681)
chr1 (101-147)||(28399350-28399396)
chr1 (101-150)||(9298443-9298492)
chr1 (120-165)||(24114727-24114772)
chr1 (101-165)||(18343643-18343706)
chr1 (101-165)||(27534728-27534791)
chr1 (108-152)||(34899022-34899066)
[»] chr5 (6 HSPs)
chr5 (101-149)||(26905667-26905715)
chr5 (101-152)||(25487649-25487700)
chr5 (101-165)||(18573347-18573411)
chr5 (115-165)||(35402069-35402119)
chr5 (115-144)||(39915606-39915635)
chr5 (101-165)||(33164497-33164560)
[»] chr3 (13 HSPs)
chr3 (101-153)||(4219220-4219272)
chr3 (101-152)||(3961800-3961851)
chr3 (101-147)||(40401538-40401584)
chr3 (101-165)||(106072-106136)
chr3 (101-165)||(5327513-5327577)
chr3 (101-144)||(2147776-2147819)
chr3 (101-163)||(20044886-20044948)
chr3 (120-166)||(55125499-55125545)
chr3 (111-152)||(31348488-31348529)
chr3 (103-152)||(33975394-33975443)
chr3 (100-152)||(33937416-33937468)
chr3 (101-165)||(48652477-48652540)
chr3 (101-165)||(55090620-55090683)
[»] chr2 (15 HSPs)
chr2 (101-165)||(20607341-20607405)
chr2 (101-165)||(17792502-17792566)
chr2 (101-147)||(6431416-6431462)
chr2 (106-152)||(17116436-17116482)
chr2 (110-147)||(17767589-17767626)
chr2 (112-165)||(31811725-31811777)
chr2 (108-165)||(38233601-38233657)
chr2 (108-152)||(11426682-11426726)
chr2 (111-165)||(2550198-2550252)
chr2 (101-151)||(20379655-20379705)
chr2 (110-147)||(2763546-2763583)
chr2 (184-267)||(7582206-7582290)
chr2 (101-165)||(11581157-11581221)
chr2 (101-137)||(15028339-15028375)
chr2 (101-165)||(25067881-25067944)
[»] chr8 (13 HSPs)
chr8 (101-147)||(32778987-32779033)
chr8 (96-165)||(977276-977345)
chr8 (101-166)||(10952298-10952362)
chr8 (101-166)||(10960303-10960367)
chr8 (101-166)||(12832370-12832434)
chr8 (101-165)||(2968560-2968624)
chr8 (110-166)||(4429089-4429144)
chr8 (100-136)||(13576223-13576259)
chr8 (101-165)||(19384372-19384436)
chr8 (122-165)||(37429817-37429860)
chr8 (118-152)||(9628911-9628945)
chr8 (101-165)||(4928000-4928064)
chr8 (101-149)||(28210315-28210363)
[»] chr4 (10 HSPs)
chr4 (101-147)||(12717146-12717192)
chr4 (101-144)||(22049433-22049476)
chr4 (106-152)||(39797908-39797954)
chr4 (101-147)||(3159089-3159135)
chr4 (106-152)||(38431527-38431573)
chr4 (111-149)||(40199649-40199687)
chr4 (101-165)||(6911709-6911772)
chr4 (101-165)||(26742492-26742555)
chr4 (100-144)||(27090774-27090818)
chr4 (100-152)||(45681955-45682007)
[»] scaffold0007 (1 HSPs)
scaffold0007 (106-147)||(202084-202125)
[»] chr7 (5 HSPs)
chr7 (101-153)||(39990203-39990255)
chr7 (106-165)||(6646624-6646682)
chr7 (100-147)||(35306507-35306554)
chr7 (101-147)||(29352292-29352338)
chr7 (120-152)||(33476700-33476732)
[»] chr6 (9 HSPs)
chr6 (106-148)||(3601236-3601278)
chr6 (101-165)||(10833081-10833145)
chr6 (106-152)||(16329101-16329147)
chr6 (106-152)||(16339877-16339923)
chr6 (106-152)||(16361070-16361116)
chr6 (115-152)||(16338313-16338350)
chr6 (120-152)||(1419109-1419141)
chr6 (100-144)||(2488188-2488232)
chr6 (101-165)||(12481399-12481462)
[»] scaffold0238 (1 HSPs)
scaffold0238 (107-165)||(15713-15770)
[»] scaffold1379 (1 HSPs)
scaffold1379 (101-165)||(1115-1178)


Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 14 - 434
Target Start/End: Original strand, 12539309 - 12539728
Alignment:
Q  14 attattctcgtgacttgttcgggaagaagtgtctcacgacaacgaatattatctataagaaaacacactgcacaaaggtgaaaaatcaaaataaacgaaa 113  Q
    |||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  12539309 attactctcgtgacctgttcgggaagaagtgtctcgcgacaacgaatattatctataagaaaacacattgcacaaaggtgaaaaatcaaaataaatgaaa 12539408  T
Q  114 gaagactgaaaatatgtggaaatcacttatttaactaaagtagaaa-gaaaaatttgaagtgtgatttcaagtcaaaattgaagctaaatcaccctcttt 212  Q
    |||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  12539409 gaaggctgaaaatatgtggaaatcatttatttaactaaagtagaaaagaaaaatttgaagggtgatttcaagtcaaaattgaagctaaatcatcctcttt 12539508  T
Q  213 gttaggtcaacaagaagaattatggtgacggctaggatttgagaaagagaaaagaagtgaaagagtcgaaggtcatatatggtttcaaatacaataaagg 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12539509 gttaggtcaacaagaagaattatggtgacggctaggatttgagaaagagaaaagaagtgaaagagtcgaaggtcatatatggtttcaaatacaataaagg 12539608  T
Q  313 agtaaatattatttaaccattaactataacatttttcattaaaaaatattatatagtgttagggttagctagggtagcggtagtaatcttgaatctgtgt 412  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||  ||  |||||||||||||||||||||||||||||||||||||||    
T  12539609 agtatatattatttaaccattaactataacatttttcattaaaaaatattatata--gtaggggttagctagggtagcggtagtaatcttgaatctgtgt 12539706  T
Q  413 tgttacttctgttgtgcgcaaa 434  Q
    ||||||||||||||||||||||    
T  12539707 tgttacttctgttgtgcgcaaa 12539728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 165
Target Start/End: Complemental strand, 38783154 - 38783096
Alignment:
Q  107 aacgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 165  Q
    |||||| ||| |||||||||||||  ||||||||||||||||||||  |||||||||||    
T  38783154 aacgaaggaaaactgaaaatatgttaaaatcacttatttaactaaaagagaaagaaaaa 38783096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 165
Target Start/End: Original strand, 45425507 - 45425565
Alignment:
Q  107 aacgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 165  Q
    |||||||||| | |||||||| ||||| ||||||||||||||||||  |||||||||||    
T  45425507 aacgaaagaaaattgaaaatacgtggatatcacttatttaactaaaagagaaagaaaaa 45425565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 16575084 - 16575141
Alignment:
Q  108 acgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 165  Q
    ||||||||||| |||||||||||||||| ||| ||||||||||||  | |||||||||    
T  16575084 acgaaagaagattgaaaatatgtggaaaccacctatttaactaaaagaaaaagaaaaa 16575141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 8737435 - 8737403
Alignment:
Q  109 cgaaagaagactgaaaatatgtggaaatcactt 141  Q
    |||||||||||||||||||||||||||||||||    
T  8737435 cgaaagaagactgaaaatatgtggaaatcactt 8737403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 25572511 - 25572559
Alignment:
Q  115 aagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaa 163  Q
    |||| |||||||||||||||||||||||||||| ||||  |||||||||    
T  25572511 aagattgaaaatatgtggaaatcacttatttaaataaaaaagaaagaaa 25572559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 152
Target Start/End: Complemental strand, 13999058 - 13999007
Alignment:
Q  101 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaa 152  Q
    |||| |||||||| || |||||||||||||| |||||| |||||||||||||    
T  13999058 aaaacaaacgaaataatactgaaaatatgtgaaaatcatttatttaactaaa 13999007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 2513635 - 2513681
Alignment:
Q  106 aaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaa 152  Q
    |||||||| |||||||||||||| || |||||| |||||||||||||    
T  2513635 aaacgaaataagactgaaaatatatgaaaatcatttatttaactaaa 2513681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 147
Target Start/End: Original strand, 28399350 - 28399396
Alignment:
Q  101 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaa 147  Q
    |||| ||||||||||| ||| |||||||||| |||||||||||||||    
T  28399350 aaaacaaacgaaagaaaactaaaaatatgtgaaaatcacttatttaa 28399396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 9298443 - 9298492
Alignment:
Q  101 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaacta 150  Q
    |||| ||||||||||| ||| |||||| |||||||||| |||||||||||    
T  9298443 aaaacaaacgaaagaaaacttaaaatacgtggaaatcaattatttaacta 9298492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 165
Target Start/End: Original strand, 24114727 - 24114772
Alignment:
Q  120 tgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 165  Q
    |||||||||||  ||||||||||||||||||||  |||||||||||    
T  24114727 tgaaaatatgttaaaatcacttatttaactaaaaaagaaagaaaaa 24114772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 18343706 - 18343643
Alignment:
Q  101 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 165  Q
    |||| ||||||||||| || |||||||||| ||||||||| |||||| ||| |||||| ||||||    
T  18343706 aaaacaaacgaaagaaaacagaaaatatgt-gaaatcactcatttaattaaggtagaaggaaaaa 18343643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 27534791 - 27534728
Alignment:
Q  101 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 165  Q
    |||| ||||||||||| || |||||||||| ||||||||||||| || ||| |||||| ||||||    
T  27534791 aaaacaaacgaaagaaaacagaaaatatgt-gaaatcacttattcaattaaggtagaaggaaaaa 27534728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 34899066 - 34899022
Alignment:
Q  108 acgaaagaagactgaaaatatgtggaaatcacttatttaactaaa 152  Q
    ||||||||| |||||||||||  ||||||||||||||||| ||||    
T  34899066 acgaaagaaaactgaaaatatacggaaatcacttatttaattaaa 34899022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 26905667 - 26905715
Alignment:
Q  101 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaact 149  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26905667 aaaacaaacgaaagaagactgaaaatatgtggaaatcacttatttaact 26905715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 152
Target Start/End: Complemental strand, 25487700 - 25487649
Alignment:
Q  101 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaa 152  Q
    |||| ||||||||||| | |||||||||||| ||||||||||||||||||||    
T  25487700 aaaacaaacgaaagaacaatgaaaatatgtgaaaatcacttatttaactaaa 25487649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 18573411 - 18573347
Alignment:
Q  101 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 165  Q
    |||| ||| ||||||||| ||||||||| || ||||||||| ||||||||||  |||||||||||    
T  18573411 aaaacaaaagaaagaagattgaaaatatatgaaaatcacttgtttaactaaaaaagaaagaaaaa 18573347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 35402119 - 35402069
Alignment:
Q  115 aagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 165  Q
    |||| ||||||| |||||||||||||||||||||||||  | |||||||||    
T  35402119 aagattgaaaatttgtggaaatcacttatttaactaaacaataaagaaaaa 35402069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 144
Target Start/End: Complemental strand, 39915635 - 39915606
Alignment:
Q  115 aagactgaaaatatgtggaaatcacttatt 144  Q
    ||||||||||||||||||||||||||||||    
T  39915635 aagactgaaaatatgtggaaatcacttatt 39915606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 33164497 - 33164560
Alignment:
Q  101 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 165  Q
    |||| ||||||||||| || |||||||||| ||||||||||||| || ||| |||||| ||||||    
T  33164497 aaaacaaacgaaagaaaacagaaaatatgt-gaaatcacttattcaattaaggtagaaggaaaaa 33164560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 4219272 - 4219220
Alignment:
Q  101 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaag 153  Q
    |||| ||||||||||| |||||||||||||| |||||||||||||||||||||    
T  4219272 aaaacaaacgaaagaaaactgaaaatatgtgaaaatcacttatttaactaaag 4219220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 152
Target Start/End: Original strand, 3961800 - 3961851
Alignment:
Q  101 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaa 152  Q
    |||| |||||||| || ||||||||||||||||||||| |||||||||||||    
T  3961800 aaaacaaacgaaataatactgaaaatatgtggaaatcatttatttaactaaa 3961851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 147
Target Start/End: Original strand, 40401538 - 40401584
Alignment:
Q  101 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaa 147  Q
    ||||||||||||| | ||||||||||| |||||||||||||||||||    
T  40401538 aaaataaacgaaatatgactgaaaatacgtggaaatcacttatttaa 40401584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 106072 - 106136
Alignment:
Q  101 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 165  Q
    |||| ||||||||||| ||| |||||||||| ||||||||||||||| ||  |||||| ||||||    
T  106072 aaaacaaacgaaagaaaactaaaaatatgtgaaaatcacttatttaattagggtagaatgaaaaa 106136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 5327513 - 5327577
Alignment:
Q  101 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 165  Q
    |||| ||||||||||| ||||||||| ||||  |||||||||||||||| ||  |||||||||||    
T  5327513 aaaacaaacgaaagaaaactgaaaatttgtgataatcacttatttaactgaaagagaaagaaaaa 5327577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 144
Target Start/End: Complemental strand, 2147819 - 2147776
Alignment:
Q  101 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatt 144  Q
    |||| ||| ||||||| |||||||||||||||||||||||||||    
T  2147819 aaaacaaatgaaagaaaactgaaaatatgtggaaatcacttatt 2147776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 163
Target Start/End: Original strand, 20044886 - 20044948
Alignment:
Q  101 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaa 163  Q
    ||||||||| ||| || | ||||  |||||| ||||||||||||||||||||| |||||||||    
T  20044886 aaaataaacaaaataatattgaatttatgtgaaaatcacttatttaactaaagaagaaagaaa 20044948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 166
Target Start/End: Complemental strand, 55125545 - 55125499
Alignment:
Q  120 tgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaat 166  Q
    ||||||||||||||| ||| |||||||||||||  ||||||||||||    
T  55125545 tgaaaatatgtggaagtcatttatttaactaaaaaagaaagaaaaat 55125499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 152
Target Start/End: Complemental strand, 31348529 - 31348488
Alignment:
Q  111 aaagaagactgaaaatatgtggaaatcacttatttaactaaa 152  Q
    |||||||||| ||  |||||||||||||||||||||||||||    
T  31348529 aaagaagacttaatttatgtggaaatcacttatttaactaaa 31348488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 152
Target Start/End: Original strand, 33975394 - 33975443
Alignment:
Q  103 aataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaa 152  Q
    ||||||| |||||| || ||||||||||| ||||||||| ||||||||||    
T  33975394 aataaacaaaagaataccgaaaatatgtgcaaatcacttgtttaactaaa 33975443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 33937416 - 33937468
Alignment:
Q  100 caaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaa 152  Q
    ||||| |||||||||||  ||||||||| ||| ||||||||||||| ||||||    
T  33937416 caaaacaaacgaaagaaagctgaaaatacgtgaaaatcacttattttactaaa 33937468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 48652477 - 48652540
Alignment:
Q  101 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 165  Q
    |||| ||||||||||| || |||||||||| ||||||||||||| || ||| |||||| ||||||    
T  48652477 aaaacaaacgaaagaaaacagaaaatatgt-gaaatcacttattcaattaaggtagaaggaaaaa 48652540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 55090620 - 55090683
Alignment:
Q  101 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 165  Q
    |||| ||| ||||||| || ||||||||||| ||||||||||||||| ||| |||||| ||||||    
T  55090620 aaaacaaatgaaagaaaacagaaaatatgtg-aaatcacttatttaattaaggtagaaggaaaaa 55090683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 20607341 - 20607405
Alignment:
Q  101 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 165  Q
    |||| ||||||||||| |||||||||||||| |||||||||| |||||||||  |||||||||||    
T  20607341 aaaacaaacgaaagaaaactgaaaatatgtgaaaatcacttagttaactaaaaaagaaagaaaaa 20607405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 17792566 - 17792502
Alignment:
Q  101 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 165  Q
    |||| ||||||||||| |||||||||||||| ||||| |||||||||||| |  |||||||||||    
T  17792566 aaaacaaacgaaagaaaactgaaaatatgtgaaaatcgcttatttaactagaagagaaagaaaaa 17792502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 147
Target Start/End: Original strand, 6431416 - 6431462
Alignment:
Q  101 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaa 147  Q
    |||| |||| |||||| ||||||||||||||||||||||||||||||    
T  6431416 aaaacaaacaaaagaaaactgaaaatatgtggaaatcacttatttaa 6431462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 17116436 - 17116482
Alignment:
Q  106 aaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaa 152  Q
    |||||||||||||||||||||||||| |||||||| |||||| ||||    
T  17116436 aaacgaaagaagactgaaaatatgtgaaaatcactaatttaaataaa 17116482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 110 - 147
Target Start/End: Original strand, 17767589 - 17767626
Alignment:
Q  110 gaaagaagactgaaaatatgtggaaatcacttatttaa 147  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  17767589 gaaagaaaactgaaaatatgtggaaatcacttatttaa 17767626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 31811777 - 31811725
Alignment:
Q  112 aagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 165  Q
    |||||||||||||||||||| ||||||||||||||| |||| ||||| ||||||    
T  31811777 aagaagactgaaaatatgtgaaaatcacttatttaattaaa-tagaatgaaaaa 31811725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 108 - 165
Target Start/End: Complemental strand, 38233657 - 38233601
Alignment:
Q  108 acgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 165  Q
    ||||||||||| | |||||||||||||| |||||||||||||||| || |||||||||    
T  38233657 acgaaagaagaataaaaatatgtggaaaacacttatttaactaaaata-aaagaaaaa 38233601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 11426726 - 11426682
Alignment:
Q  108 acgaaagaagactgaaaatatgtggaaatcacttatttaactaaa 152  Q
    ||||||| | ||||||||||||||||||||||| |||||||||||    
T  11426726 acgaaagcatactgaaaatatgtggaaatcactcatttaactaaa 11426682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 165
Target Start/End: Complemental strand, 2550252 - 2550198
Alignment:
Q  111 aaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 165  Q
    |||||| ||| |||||| ||||||||||||||||||| ||||  |||||||||||    
T  2550252 aaagaaaactaaaaatacgtggaaatcacttatttaattaaaagagaaagaaaaa 2550198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 151
Target Start/End: Complemental strand, 20379705 - 20379655
Alignment:
Q  101 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaa 151  Q
    ||||||||| ||||| || |||||||||||| |||| ||||||||||||||    
T  20379705 aaaataaacaaaagatgattgaaaatatgtgaaaataacttatttaactaa 20379655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 147
Target Start/End: Original strand, 2763546 - 2763583
Alignment:
Q  110 gaaagaagactgaaaatatgtggaaatcacttatttaa 147  Q
    |||||||||||||||||||||| |||| ||||||||||    
T  2763546 gaaagaagactgaaaatatgtgaaaattacttatttaa 2763583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 184 - 267
Target Start/End: Original strand, 7582206 - 7582290
Alignment:
Q  184 gtcaaaattgaagctaaatcaccctcttt-gttaggtcaacaagaagaattatggtgacggctaggatttgagaaagagaaaaga 267  Q
    |||||||||||  |||||||||||  ||| | |||||||| ||||||||   | || |||||||||||||||||| |||||||||    
T  7582206 gtcaaaattgaccctaaatcacccattttcggtaggtcaagaagaagaaaagttgttacggctaggatttgagaaggagaaaaga 7582290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 11581157 - 11581221
Alignment:
Q  101 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 165  Q
    |||| |||| |||||| ||| ||||||| || |||||||||||||||| |||  |||||||||||    
T  11581157 aaaacaaaccaaagaaaactaaaaatatatgaaaatcacttatttaacaaaaagagaaagaaaaa 11581221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 137
Target Start/End: Original strand, 15028339 - 15028375
Alignment:
Q  101 aaaataaacgaaagaagactgaaaatatgtggaaatc 137  Q
    |||| |||||||||||||||||||||||||| |||||    
T  15028339 aaaacaaacgaaagaagactgaaaatatgtgaaaatc 15028375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 25067944 - 25067881
Alignment:
Q  101 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 165  Q
    |||| ||||||||||| || |||||||||| ||||||||||||| || |||| ||||| ||||||    
T  25067944 aaaagaaacgaaagaaaacagaaaatatgt-gaaatcacttattcaattaaaatagaaggaaaaa 25067881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 101 - 147
Target Start/End: Original strand, 32778987 - 32779033
Alignment:
Q  101 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaa 147  Q
    |||||||||||||||| |||||||||||||||||||| |||||||||    
T  32778987 aaaataaacgaaagaaaactgaaaatatgtggaaatctcttatttaa 32779033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 165
Target Start/End: Complemental strand, 977345 - 977276
Alignment:
Q  96 aaatcaaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 165  Q
    ||||||||| |||| ||| || ||||||||||  |||||||||||||||||||||||  |||| ||||||    
T  977345 aaatcaaaacaaacaaaaaaaaactgaaaatacatggaaatcacttatttaactaaaaaagaaggaaaaa 977276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 10952298 - 10952362
Alignment:
Q  101 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaat 166  Q
    ||||||||||||| |||| |||||| ||||| ||||||||||||||||||||  | ||||||||||    
T  10952298 aaaataaacgaaaaaagattgaaaa-atgtgaaaatcacttatttaactaaaagaaaaagaaaaat 10952362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 10960303 - 10960367
Alignment:
Q  101 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaat 166  Q
    ||||||||||||| |||| |||||| ||||| ||||||||||||||||||||  | ||||||||||    
T  10960303 aaaataaacgaaaaaagattgaaaa-atgtgaaaatcacttatttaactaaaagaaaaagaaaaat 10960367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 12832370 - 12832434
Alignment:
Q  101 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaat 166  Q
    |||| ||||||||||  | ||||||||||||||||||| |||||||||||||  ||||||||||||    
T  12832370 aaaacaaacgaaagataattgaaaatatgtggaaatcaattatttaactaaa-aagaaagaaaaat 12832434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 2968624 - 2968560
Alignment:
Q  101 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 165  Q
    |||| ||||||||||| ||| |||||||||| ||||||||||||||| || | || |||||||||    
T  2968624 aaaacaaacgaaagaaaactaaaaatatgtgaaaatcacttatttaattagaatataaagaaaaa 2968560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 166
Target Start/End: Complemental strand, 4429144 - 4429089
Alignment:
Q  110 gaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaat 166  Q
    ||||||||| |||||||||||| ||||||| ||||||||||||  ||||||||||||    
T  4429144 gaaagaagattgaaaatatgtgaaaatcacctatttaactaaa-aagaaagaaaaat 4429089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 136
Target Start/End: Original strand, 13576223 - 13576259
Alignment:
Q  100 caaaataaacgaaagaagactgaaaatatgtggaaat 136  Q
    ||||||||||||||||| |||||||||||||||||||    
T  13576223 caaaataaacgaaagaaaactgaaaatatgtggaaat 13576259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 19384436 - 19384372
Alignment:
Q  101 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 165  Q
    |||||||||| |||||  ||||||||||||| |||| |||| ||||||||||  |||||||||||    
T  19384436 aaaataaacggaagaaagctgaaaatatgtgaaaattacttgtttaactaaaagagaaagaaaaa 19384372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 165
Target Start/End: Original strand, 37429817 - 37429860
Alignment:
Q  122 aaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 165  Q
    |||||||||| |||||||||||| ||||||| ||||||||||||    
T  37429817 aaaatatgtgaaaatcacttattaaactaaaatagaaagaaaaa 37429860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 9628911 - 9628945
Alignment:
Q  118 actgaaaatatgtggaaatcacttatttaactaaa 152  Q
    ||||||||||||||||||||| |||||||||||||    
T  9628911 actgaaaatatgtggaaatcatttatttaactaaa 9628945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 4928064 - 4928000
Alignment:
Q  101 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 165  Q
    |||| ||||||||||||||| ||||||||||| |||  |||||||||| |||  |||| ||||||    
T  4928064 aaaacaaacgaaagaagactaaaaatatgtgggaattgcttatttaaccaaaaaagaaggaaaaa 4928000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 28210363 - 28210315
Alignment:
Q  101 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaact 149  Q
    |||| |||||||| |||||| |||||||||  |||||||||||||||||    
T  28210363 aaaacaaacgaaataagactaaaaatatgtataaatcacttatttaact 28210315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 101 - 147
Target Start/End: Original strand, 12717146 - 12717192
Alignment:
Q  101 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaa 147  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||    
T  12717146 aaaacaaacgaaagaaaactgaaaatatgtggaaatcacttatttaa 12717192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 144
Target Start/End: Original strand, 22049433 - 22049476
Alignment:
Q  101 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatt 144  Q
    |||||||| ||||||| |||||||||||||||||||||||||||    
T  22049433 aaaataaatgaaagaaaactgaaaatatgtggaaatcacttatt 22049476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 39797954 - 39797908
Alignment:
Q  106 aaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaa 152  Q
    ||||||||||||| ||||||||| || ||||||||||||||||||||    
T  39797954 aaacgaaagaagattgaaaatatatgaaaatcacttatttaactaaa 39797908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 147
Target Start/End: Complemental strand, 3159135 - 3159089
Alignment:
Q  101 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaa 147  Q
    |||| |||||||||||  ||||||||||||| |||||||||||||||    
T  3159135 aaaacaaacgaaagaaagctgaaaatatgtgaaaatcacttatttaa 3159089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 38431527 - 38431573
Alignment:
Q  106 aaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaa 152  Q
    |||||||| |||| |||||||||||| ||||| ||||||||||||||    
T  38431527 aaacgaaataagattgaaaatatgtgaaaatcgcttatttaactaaa 38431573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 149
Target Start/End: Original strand, 40199649 - 40199687
Alignment:
Q  111 aaagaagactgaaaatatgtggaaatcacttatttaact 149  Q
    |||||||| || |||||||||||||||||||||||||||    
T  40199649 aaagaagattggaaatatgtggaaatcacttatttaact 40199687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 6911772 - 6911709
Alignment:
Q  101 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 165  Q
    |||| ||||||||||| || |||||||||| ||||||||||||| || ||| |||||| ||||||    
T  6911772 aaaacaaacgaaagaaaacagaaaatatgt-gaaatcacttattcaattaaggtagaaggaaaaa 6911709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 26742492 - 26742555
Alignment:
Q  101 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 165  Q
    |||| ||||||||||| || |||||||||| ||||||||||||| || |||  ||||||||||||    
T  26742492 aaaacaaacgaaagaaaacagaaaatatgt-gaaatcacttattcaattaagatagaaagaaaaa 26742555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 27090818 - 27090774
Alignment:
Q  100 caaaataaacgaaagaagactgaaaatatgtggaaatcacttatt 144  Q
    ||||| ||||||||||| | |||||||| ||||||||||||||||    
T  27090818 caaaacaaacgaaagaaaaatgaaaatacgtggaaatcacttatt 27090774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 45681955 - 45682007
Alignment:
Q  100 caaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaa 152  Q
    ||||| |||||||| |||| |||||||||||| ||| ||||| ||||||||||    
T  45681955 caaaacaaacgaaataagattgaaaatatgtgaaaaccacttgtttaactaaa 45682007  T

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Target: scaffold0007 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 202084 - 202125
Alignment:
Q  106 aaacgaaagaagactgaaaatatgtggaaatcacttatttaa 147  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  202084 aaacgaaagaatactgaaaatatgtggaaatcacttatttaa 202125  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 39990203 - 39990255
Alignment:
Q  101 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaag 153  Q
    |||| ||||||||||| |||||||||||||| ||||||| |||||||||||||    
T  39990203 aaaacaaacgaaagaaaactgaaaatatgtgaaaatcacctatttaactaaag 39990255  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 106 - 165
Target Start/End: Original strand, 6646624 - 6646682
Alignment:
Q  106 aaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 165  Q
    ||||||||||| |||||||||||||| |||||  |||||||||||||| |||||||||||    
T  6646624 aaacgaaagaaaactgaaaatatgtgaaaatcctttatttaactaaag-agaaagaaaaa 6646682  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 100 - 147
Target Start/End: Original strand, 35306507 - 35306554
Alignment:
Q  100 caaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaa 147  Q
    |||| |||| |||||||||||||||||||||| |||||||||||||||    
T  35306507 caaagtaaaggaaagaagactgaaaatatgtgtaaatcacttatttaa 35306554  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 147
Target Start/End: Complemental strand, 29352338 - 29352292
Alignment:
Q  101 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaa 147  Q
    |||| ||||||||||| ||||| ||||||||||||||||||||||||    
T  29352338 aaaacaaacgaaagaaaactgagaatatgtggaaatcacttatttaa 29352292  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 120 - 152
Target Start/End: Original strand, 33476700 - 33476732
Alignment:
Q  120 tgaaaatatgtggaaatcacttatttaactaaa 152  Q
    |||||||||||||||||||||||||||||||||    
T  33476700 tgaaaatatgtggaaatcacttatttaactaaa 33476732  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 148
Target Start/End: Original strand, 3601236 - 3601278
Alignment:
Q  106 aaacgaaagaagactgaaaatatgtggaaatcacttatttaac 148  Q
    ||||| |||||||||||| ||||||||||||||||||||||||    
T  3601236 aaacgtaagaagactgaacatatgtggaaatcacttatttaac 3601278  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 165
Target Start/End: Complemental strand, 10833145 - 10833081
Alignment:
Q  101 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 165  Q
    |||||||| |||| |||| |||||||||||| |||||||||||| ||||||   |||||||||||    
T  10833145 aaaataaatgaaaaaagattgaaaatatgtgaaaatcacttattcaactaataaagaaagaaaaa 10833081  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 16329101 - 16329147
Alignment:
Q  106 aaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaa 152  Q
    |||||||| ||||||||||||||||| |||| | |||||||||||||    
T  16329101 aaacgaaacaagactgaaaatatgtgaaaatgaattatttaactaaa 16329147  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 16339877 - 16339923
Alignment:
Q  106 aaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaa 152  Q
    |||||||| ||||||| |||||||||||||| | |||||||||||||    
T  16339877 aaacgaaacaagactgcaaatatgtggaaatgagttatttaactaaa 16339923  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 16361070 - 16361116
Alignment:
Q  106 aaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaa 152  Q
    |||||||| |||||||| ||||||||||||| | |||||||||||||    
T  16361070 aaacgaaacaagactgacaatatgtggaaatgagttatttaactaaa 16361116  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 16338313 - 16338350
Alignment:
Q  115 aagactgaaaatatgtggaaatcacttatttaactaaa 152  Q
    |||||||||||||||||||||| | |||||||||||||    
T  16338313 aagactgaaaatatgtggaaatgagttatttaactaaa 16338350  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 152
Target Start/End: Original strand, 1419109 - 1419141
Alignment:
Q  120 tgaaaatatgtggaaatcacttatttaactaaa 152  Q
    |||||||||||| ||||||||||||||||||||    
T  1419109 tgaaaatatgtgaaaatcacttatttaactaaa 1419141  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 2488232 - 2488188
Alignment:
Q  100 caaaataaacgaaagaagactgaaaatatgtggaaatcacttatt 144  Q
    ||||| ||||||||||| | |||||||| ||||||||||||||||    
T  2488232 caaaacaaacgaaagaaaaatgaaaatacgtggaaatcacttatt 2488188  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 12481399 - 12481462
Alignment:
Q  101 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 165  Q
    |||| ||||||||||| || |||||||||| ||||||||||||| || ||| |||||| ||||||    
T  12481399 aaaacaaacgaaagaaaacagaaaatatgt-gaaatcacttattcaattaaggtagaaggaaaaa 12481462  T

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Target: scaffold0238 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 165
Target Start/End: Original strand, 15713 - 15770
Alignment:
Q  107 aacgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 165  Q
    ||||||||||  ||||||| ||||||||||||||||||||| ||||  |||||||||||    
T  15713 aacgaaagaaagctgaaaa-atgtggaaatcacttatttaattaaaagagaaagaaaaa 15770  T

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Target: scaffold1379 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1379
Description:

Target: scaffold1379; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 1115 - 1178
Alignment:
Q  101 aaaataaacgaaagaagactgaaaatatgtggaaatcacttatttaactaaagtagaaagaaaaa 165  Q
    |||| ||||||||||| ||||||||||||| ||||||||||||| || ||  |||||| ||||||    
T  1115 aaaacaaacgaaagaaaactgaaaatatgt-gaaatcacttattcaattagggtagaaggaaaaa 1178  T

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