View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1410_high_1 (Length: 428)
Name: NF1410_high_1
Description: NF1410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1410_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 20 - 414
Target Start/End: Complemental strand, 6120787 - 6120389
Alignment:
| Q |
20 |
atgtgcctgaggatttcctgctctgtaagccctcccatttcctgtgggacatatatttgcaacatacatgnnnnnnngaagacatgtattacttgtacat |
119 |
Q |
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| T |
6120787 |
atgtgcctgaggatttcctgctctgtaagccctcccatttcctgtgtgacatatatttgcaaaatacatgaaaaaaagaagacatgtattatttgtacat |
6120688 |
T |
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| Q |
120 |
taataattaattaatta----catagcatttacctcgtcactactctctgaattatcagtgctttcttgagattcattttgcaagtcccttgccaacaac |
215 |
Q |
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| T |
6120687 |
taataattaattaattaattacataacatttacctcgtcactactctctgaattatcagtgctttcttgagattcattttgcaagtcccttgccaacaac |
6120588 |
T |
|
| Q |
216 |
taaaatgaagtaatgtgaattttcttgagtaaagaatatgtcgttcctaattgtcaaccgctaaagactttaaatcaatataagataaatgtgttgtagg |
315 |
Q |
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| T |
6120587 |
taaaatgaagtaatgtgaattttctttagtaaagaatatgttgttcctaattgccaaccactaaagactttaaatcaatataagataaatgtgttgtagg |
6120488 |
T |
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| Q |
316 |
gagctaaaaatttgctacattatatacccaaataccagattttactcatgaatgctaaattaataaacatatcaattaagaaagtatatatacctcttc |
414 |
Q |
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| T |
6120487 |
gagctaaaaatttgctacattatatacccaaataccagattttactcatgaatgctaaattaataaacatatcaattaagaaagtatatatacctcttc |
6120389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 217 - 337
Target Start/End: Complemental strand, 6132439 - 6132322
Alignment:
| Q |
217 |
aaaatgaagtaatgtgaattttcttgagtaaagaatatgtcgttcctaattgtcaaccgctaaagactttaaatcaatataagataaatgtgttgtaggg |
316 |
Q |
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| T |
6132439 |
aaaatgaagtaatttgaattttctttagcaaagaatatgtcgttcct---tgccaaccacaaaagactttaaatcaatataagagaaatgtgttgtagag |
6132343 |
T |
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| Q |
317 |
agctaaaaatttgctacatta |
337 |
Q |
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| T |
6132342 |
agctaaaaatttgctacatta |
6132322 |
T |
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