View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1410_low_10 (Length: 208)
Name: NF1410_low_10
Description: NF1410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1410_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 72 - 193
Target Start/End: Original strand, 14042529 - 14042648
Alignment:
| Q |
72 |
ataatattatagaaggagatccattctcttaactatatatgcaatgtttacacctcttatttattatagactacttgtttcttttaaatataacatctta |
171 |
Q |
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| T |
14042529 |
ataatattatagaagacgattcattctcttaattata--tgcaatgtttacacctcttatctattatagactacttgtttcttttaaatataacatctta |
14042626 |
T |
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| Q |
172 |
ttctgtctataaccttaattgt |
193 |
Q |
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|||||||||||||||||||||| |
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| T |
14042627 |
ttctgtctataaccttaattgt |
14042648 |
T |
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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 127
Target Start/End: Original strand, 14038961 - 14039014
Alignment:
| Q |
72 |
ataatattatagaaggagatccattctcttaactatatatgcaatgtttacacctc |
127 |
Q |
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|||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
14038961 |
ataatattatagaaggcgatccattctcttaac--tatatgcaatgtttacacctc |
14039014 |
T |
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