View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1410_low_4 (Length: 317)
Name: NF1410_low_4
Description: NF1410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1410_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 122 - 304
Target Start/End: Original strand, 12316577 - 12316759
Alignment:
| Q |
122 |
ctctagaggatcaatgcattctttctagagcctcattagactccatgtattatcaattctctacaagctttgtgtattctttatgcaagcttcatcaagc |
221 |
Q |
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| T |
12316577 |
ctctagaggatcaatgcattctttctagagcctcattagactccatgtattatcaattctctacaagctttgtgtattctttatgcaagcttcatcaagc |
12316676 |
T |
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| Q |
222 |
atcatctgttgaggcaaaatacaaaataatattgtaaagataagaaactttatttattaagtgattaaaggatttgatccata |
304 |
Q |
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| T |
12316677 |
atcatgtgttgaggcaaaatacaaaataatattgtaaagataagaaactttatttattaagtgattaaaggatttgatccata |
12316759 |
T |
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Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 12316497 - 12316578
Alignment:
| Q |
14 |
caaataatttaatccactataatgaaactagattacgagtattttatatgcatcttcaagctttatgtatctttcccaagct |
95 |
Q |
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| T |
12316497 |
caaataatttaatccactataatgaaactagattacgagtattttatatgcatcttcaagctttatgtatctttcccaagct |
12316578 |
T |
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