View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1410_low_5 (Length: 314)
Name: NF1410_low_5
Description: NF1410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1410_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 112 - 297
Target Start/End: Original strand, 6576173 - 6576357
Alignment:
| Q |
112 |
tattttaacagaataaattgtcccggacattcatgcttgtcaatgttcatatgttaattagtctagaagcatgcttatttatgagaaccttnnnnnnnnn |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6576173 |
tattttaacagaataaattgtcccggacattcatgcttgtcaatgttcatatgttaattagtctagaagcatgcttatttatgagaacctt-aaaaaaaa |
6576271 |
T |
|
| Q |
212 |
nncatactagaagtatttatgactgtcttctgaatacaatgatgttttttaggcttgagaagaaatctggagaaggccatactttg |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6576272 |
aacatactagaagtatttatgactgtcttctgaatacaatgatgttttttaggcttgagaagaaatctggagaaggccatactttg |
6576357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 22 - 116
Target Start/End: Original strand, 6576037 - 6576131
Alignment:
| Q |
22 |
aagtttaagttctctaatttcagcgcttcattaacagaatttatttaaaacatttaatgccattctttattttcaaattctattagtacctattt |
116 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6576037 |
aagttcaagttctctaatttcagcgcttcattaacagaatttatttaaaacatttaatgccattctttattttcaaattctattagtacctattt |
6576131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 6879362 - 6879293
Alignment:
| Q |
33 |
ctctaatttcagcgcttcattaacagaatttatttaaaac-atttaatgccattctttattttcaaattc |
101 |
Q |
| |
|
|||||||||||| ||||||||| || || ||||||||||| || | ||| ||||||| |||||||||||| |
|
|
| T |
6879362 |
ctctaatttcagtgcttcattagcacaaattatttaaaacaatctcatggcattcttcattttcaaattc |
6879293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University