View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1410_low_6 (Length: 293)
Name: NF1410_low_6
Description: NF1410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1410_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 50016763 - 50016486
Alignment:
| Q |
1 |
tattcttatctttcagtgatatgtaggagtagtatttttcgacagacatgggaacgggtttataaaaagaactgtggtccacacatttattacaacccga |
100 |
Q |
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| T |
50016763 |
tattcttatctttcagtgatatgtaggagtagtatttttcttaagacatgggaacgggtttataaaaagaactgtggtccacacatttattacaacccga |
50016664 |
T |
|
| Q |
101 |
tttttaattgttattaagggactatgtgctcatcaaagtaacaaagcttattcaaaacttgaaattatcccatacaaacattacaatgtgaaaactggaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50016663 |
tttttaattgttattaagggactatgtgctcatcaaagtaacaaagcttattcaaaacttgaaattatcccatacaaacattacaatgtgaaaactggaa |
50016564 |
T |
|
| Q |
201 |
cacaagggggtgaatccaattagttacccccaacccgcaacagcaagcacaatgaaagttacaatttgtagttgaaatt |
279 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
50016563 |
cacaagggggtgaatccaattagttacccccaaccggcaacagcaagcacaatg-aagttacaatttgtagttgaaatt |
50016486 |
T |
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