View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1410_low_9 (Length: 219)
Name: NF1410_low_9
Description: NF1410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1410_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 8e-85; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 3573868 - 3573682
Alignment:
| Q |
15 |
aatatagggctgcatcaaatgctctagctgctttttcttgtgtgtcatgtgatcctaaccatattctctcacgactatttggaagcctaatttcagatac |
114 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3573868 |
aatatagggctgcatcaaatgccctagctgctttttcttgtgtgtcatatgatcctaaccatattctctcacgactatttggaagcctaatttcagatac |
3573769 |
T |
|
| Q |
115 |
ccattttccccattttctcttcctcacccctctatatatcttgttattactactattagggttttgatcagttgtggtgacattgat |
201 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
3573768 |
ccattttccccattttctcttcctcacccctctatacatcttatcattactactattagggttgtgatcagttgttgtgacattgat |
3573682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 3589160 - 3588974
Alignment:
| Q |
15 |
aatatagggctgcatcaaatgctctagctgctttttcttgtgtgtcatgtgatcctaaccatattctctcacgactatttggaagcctaatttcagatac |
114 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
3589160 |
aatatagggctgcatcaaatgccctagctgctttttcttgtgtgtcatatgatcctaaccatattctctccctactatttggaagcctaatttcagatac |
3589061 |
T |
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| Q |
115 |
ccattttccccattttctcttcctcacccctctatatatcttgttattactactattagggttttgatcagttgtggtgacattgat |
201 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3589060 |
ccattttccccattttctcttcctcacccctctatacatcttattattactactattagggctttgatcagttgtggtgacattgat |
3588974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 3551450 - 3551264
Alignment:
| Q |
15 |
aatatagggctgcatcaaatgctctagctgctttttcttgtgtgtcatgtgatcctaaccatattctctcacgactatttggaagcctaatttcagatac |
114 |
Q |
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|||| |||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||| | |||||||||||||||||| |||||||| |
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| T |
3551450 |
aataaagggctgcatcaaatgctcttgctgctttctcttgtgtgtcatatgatcctaaccatattctctccctactatttggaagcctaatctcagatac |
3551351 |
T |
|
| Q |
115 |
ccattttccccattttctcttcctcacccctctatatatcttgttattactactattagggttttgatcagttgtggtgacattgat |
201 |
Q |
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|||||||||||| ||||||||||||||||| || |||||||| |||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
3551350 |
ccattttccccaatttctcttcctcacccccctgtatatcttattatcactactattagggttttgatcagttggtgtgacattgat |
3551264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 15 - 145
Target Start/End: Complemental strand, 3562624 - 3562494
Alignment:
| Q |
15 |
aatatagggctgcatcaaatgctctagctgctttttcttgtgtgtcatgtgatcctaaccatattctctcacgactatttggaagcctaatttcagatac |
114 |
Q |
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|
|||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
3562624 |
aatatagggctgcatcaaatgccctagctgctttttcttgtgtgtcatatgatcctaaccatattctctccctactatttggaagcctaatttcagatac |
3562525 |
T |
|
| Q |
115 |
ccattttccccattttctcttcctcacccct |
145 |
Q |
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|
||||||||||||||||||||||||||||||| |
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| T |
3562524 |
ccattttccccattttctcttcctcacccct |
3562494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 201
Target Start/End: Complemental strand, 3551264 - 3551231
Alignment:
| Q |
168 |
tattagggttttgatcagttgtggtgacattgat |
201 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
3551264 |
tattagggttttgatcagttgtggtgacattgat |
3551231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 40396237 - 40396185
Alignment:
| Q |
93 |
ttggaagcctaatttcagatacccattttccccattttctcttcctcacccct |
145 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||| | ||||| |||||||||| |
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| T |
40396237 |
ttggtagcctaatttcagcaacccattttccccaatgtctctgcctcacccct |
40396185 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 10025307 - 10025130
Alignment:
| Q |
15 |
aatatagggctgcatcaaatgctctagctgctttttcttgtgtgtcatgtgatcctaaccatattctctcacgactatttggaagcctaatttcagatac |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10025307 |
aatatagggctgcatcaaatgctctagctgctttttcttgtgtgtcatgtgatcctaaccatattctctcacgactatttggaagcctaatttcagatac |
10025208 |
T |
|
| Q |
115 |
ccattttccccattttctcttcctcacccctctatatatcttgttattactactattagggttttgatcagttgtggtgacattgat |
201 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10025207 |
ccat---------tttctcttcctcacccctctatatatcttgttattactactattagggttttgatcagttgtggtgacattgat |
10025130 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 26 - 133
Target Start/End: Original strand, 48645712 - 48645819
Alignment:
| Q |
26 |
gcatcaaatgctctagctgctttttcttgtgtgtcatgtgatcctaaccatattctctcacgactatttggaagcctaatttcagatacccattttcccc |
125 |
Q |
| |
|
|||||||||||| |||||||||| || || |||| |||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
48645712 |
gcatcaaatgctttagctgctttctcagctgaatcatatgatcctaaccatattctttcacgactatttggtagccttatttcagatacccattttcccc |
48645811 |
T |
|
| Q |
126 |
attttctc |
133 |
Q |
| |
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| |||||| |
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| T |
48645812 |
actttctc |
48645819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 26 - 133
Target Start/End: Original strand, 48654125 - 48654232
Alignment:
| Q |
26 |
gcatcaaatgctctagctgctttttcttgtgtgtcatgtgatcctaaccatattctctcacgactatttggaagcctaatttcagatacccattttcccc |
125 |
Q |
| |
|
|||||||||||| |||||||||| || || |||| |||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
48654125 |
gcatcaaatgctttagctgctttctcagctgaatcatatgatcctaaccatattctttcacgactatttggtagccttatttcagatacccattttcccc |
48654224 |
T |
|
| Q |
126 |
attttctc |
133 |
Q |
| |
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| |||||| |
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|
| T |
48654225 |
actttctc |
48654232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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