View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1411-Insertion-2 (Length: 884)
Name: NF1411-Insertion-2
Description: NF1411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1411-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 451; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 14 - 548
Target Start/End: Original strand, 24098328 - 24098861
Alignment:
| Q |
14 |
gacccagagaggtatttgacattctttttatcacatcatgtcctatcttagttgcttactgtttggcaatgtaatttatgaagctactaattgtagaatt |
113 |
Q |
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| T |
24098328 |
gacccagagaggtatttgaccttctttttatcacatcatgttctatcttagttgcttactgtttggcaatgtaatttatgaagctactaattgtagaatt |
24098427 |
T |
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| Q |
114 |
tgtagcttttccgttgatatttccaaacacatgttttgtgtttagagttgctttcaagacaggtatccgtgtgcagagttgctttcaagaagtggcgtga |
213 |
Q |
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| T |
24098428 |
tgtagcttttccgttgatatttccaaacacatgttttgtgtttagagttgctttcaagacaggtacccgtgtgcagagttgctttcaagaagtggcgtga |
24098527 |
T |
|
| Q |
214 |
tgaaataaagtggttagctaacccagttaaaaatgaatgatccgtaaaaacccaagttcaaaatattcaccaaaataatctctaacctaaccatattata |
313 |
Q |
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| T |
24098528 |
tgaaataaagtggttagctaacccagttaaaaat-aatgatccgtaaaaacccaagttcaaaatattcactaaaataatctctaacctaaccatattata |
24098626 |
T |
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| Q |
314 |
cttacctcccgggcaaaccttcgagattttaagaaaagaaaaagttcaaatgacttataatgtgaaagcaaagaacgat-gttaatatcctctttttagc |
412 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
24098627 |
cttacctcccgggcaaaccttcgatattttaagaaaagaaaaagttcaaatgacttataatgtgaaagcaaagaccgatagttaatatcctctttttagc |
24098726 |
T |
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| Q |
413 |
aaacaccttgaaactagataaaatnnnnnnnnctcttcggatcgattctctagttctaccttgtgatggactcgtaattttggttaggaaaagtaaacat |
512 |
Q |
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| T |
24098727 |
aaacaccttgaaactagataaaat-taaagaactcttcgggtcgattctctacttctaccttgtgatggactcctaattttggttaggaaaagtaaatat |
24098825 |
T |
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| Q |
513 |
gcttgggccaaaattgtaatgggaaattgggaatga |
548 |
Q |
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| T |
24098826 |
gcttgggccaaaattgtaatgggaaattgggaatga |
24098861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 623 - 884
Target Start/End: Original strand, 24098912 - 24099175
Alignment:
| Q |
623 |
aaatttattaataaccaaattattgcacaacacgaattaattcatacacgaaaaccaaatcaataataaaaacaaacatttgaaatcaattcaacaccta |
722 |
Q |
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| T |
24098912 |
aaatttattaataaccaaattattgtacaacacgaattaattcatacacgaaaaccaaatcaataataaaaacaaacatttgaaatcaattcaacaccta |
24099011 |
T |
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| Q |
723 |
aactaagctaaatccccacaaactagctgaaaccaaaatttgagtcaaaatctcacaaaaacaaaatccaaacatccctcgatcgcctgctacttacacc |
822 |
Q |
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|| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24099012 |
aattaagctaaatccccacaaactagctgaaatcaaaatttgagtcaaaacctcacaaaaacaaaatccaaacatccctcgatcgcctgctacttacacc |
24099111 |
T |
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| Q |
823 |
aaagccccttaaagaa--atcacacttgccaaaaccataaacaacaacacttcaccttctcatc |
884 |
Q |
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||||||||||||| || |||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
24099112 |
aaagccccttaaaaaagcatcacacttgccgaaaccattaacaacaacacttcaccttctcatc |
24099175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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