View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1411-Insertion-3 (Length: 771)
Name: NF1411-Insertion-3
Description: NF1411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1411-Insertion-3 |
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Alignment Details
Target: chr4 (Bit Score: 572; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 8 - 715
Target Start/End: Complemental strand, 31407848 - 31407140
Alignment:
| Q |
8 |
cggagatcagatgaatgagacttaaaggatcacggattaacttattcaatgagttcccagggatgaacaatatttcttgtgga------gaaacgagcaa |
101 |
Q |
| |
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| T |
31407848 |
cggagatcaaatgaatgagacttaaagggtcacggattaacttattcaatgagttcctagggatgaacaatatttcttgtggacttatagaaacgagcaa |
31407749 |
T |
|
| Q |
102 |
atgaactgtttgaatcacaatataatgaaattgaaaccaagattatgtgaaagtgatatttgattttgtcaattgatgtgtgtcatgcaggttgtgcgta |
201 |
Q |
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|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
31407748 |
atgaactgtt-----cacaatatgatgaaattgaaaccaagattatgtgaaagtgatatttgattgtgtgaattgatgtgtgtcatgcaggttgtgcgta |
31407654 |
T |
|
| Q |
202 |
agccagcacatcatttcttggacgagcttgaaattgagtatgacgaacaggacgactatgtagtgatcaagcacgctgctctcttcacttccacaatcat |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
31407653 |
agccagcacatcatttcttggacgagcttgaaattgagtatgatgaacaggacgactatgtagtgatcaagcatgctgctctcttcacttccaccatcat |
31407554 |
T |
|
| Q |
302 |
gagcaagctactagcaaggccaaacgtgaagcttttcaatgctgtagctgctgaggatttgattgtgaagaatggaagagttggcggtgttgtcactaat |
401 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
31407553 |
gagcaagctactagcaaggccaaacgtgaagcttttcaatgctgtagctgctgaggatttgattgtgaagaatgaaagagttggtggtgttgtcactaac |
31407454 |
T |
|
| Q |
402 |
tgggctttggtttcaatgaaccatgacactcaatcttgcatggacccaaatgttatggagtctaaagtggtggtgagttcttgtggccatgatggtcctt |
501 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||| |
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| T |
31407453 |
tgggctttggtttcaatgaaccatgacactcaatcctgcatggacccaaatgttatggagtctaaagttgtggttagctcttgtggccatgatggtcctt |
31407354 |
T |
|
| Q |
502 |
ttggagccactggtgtgaagaggctcaagagtattggtttgattgatactgtgcccggaatgaaggccctcgacatgaacactgccgaggatgctattgt |
601 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31407353 |
ttggagccactggtgtgaagaggctcaagagtattggtttgattgataccgtgcctggaatgaaggccctcgacatgaacactgccgaggatgctattgt |
31407254 |
T |
|
| Q |
602 |
taggctcactagggaggttgttcctggaatgatagtaactggcatggaggttgctgagattgatggtgctccaagaatggtaaaaaatttcacc-ttttc |
700 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||| |
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| T |
31407253 |
taggctcactagggaggttgttcctggaatgatagtaactggcatggaggttgctgagattgatggtgctccaagaatggt-aaatttttcacctttttc |
31407155 |
T |
|
| Q |
701 |
atattcaaatagttt |
715 |
Q |
| |
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|| |||||||||||| |
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|
| T |
31407154 |
attttcaaatagttt |
31407140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 713 - 767
Target Start/End: Complemental strand, 31407099 - 31407043
Alignment:
| Q |
713 |
tttacaacactcaca--cattgcacaccaatcatttgcgctagactttggtcgttta |
767 |
Q |
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| T |
31407099 |
tttacaacactcacatacattgcgcactaatcatttgcgctagactttgatcgttta |
31407043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 170; Significance: 8e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 8e-91
Query Start/End: Original strand, 235 - 684
Target Start/End: Complemental strand, 47481722 - 47481273
Alignment:
| Q |
235 |
ttgagtatgacgaacaggacgactatgtagtgatcaagcacgctgctctcttcacttccacaatcatgagcaagctactagcaaggccaaacgtgaagct |
334 |
Q |
| |
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|||| ||||||||||| || ||||| || || ||||| ||||||||||| |||||||| || |||||||||||||| || |||| || || || || || |
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| T |
47481722 |
ttgaatatgacgaacaagaagactacgttgtcatcaaacacgctgctctattcacttcaaccatcatgagcaagcttcttgcaaaacctaatgtaaaact |
47481623 |
T |
|
| Q |
335 |
tttcaatgctgtagctgctgaggatttgattgtgaagaatggaagagttggcggtgttgtcactaattgggctttggtttcaatgaaccatgacactcaa |
434 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||| | ||||||| |||||||| || || |||||||||||||| ||||||||||| || ||| |
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| T |
47481622 |
tttcaatgctgttgctgctgaggatttgattgtgaaggaaaacagagttgctggtgttgttacaaactgggctttggtttcgatgaaccatgatacacaa |
47481523 |
T |
|
| Q |
435 |
tcttgcatggacccaaatgttatggagtctaaagtggtggtgagttcttgtggccatgatggtccttttggagccactggtgtgaagaggctcaagagta |
534 |
Q |
| |
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||||||||||| || ||||||||||| |||| || || |||||||||||||| ||||||||||||||||| || |||||||| |||||| | ||||||| |
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| T |
47481522 |
tcttgcatggatcctaatgttatggaagctaaggttgttgtgagttcttgtggacatgatggtccttttggtgctactggtgttaagaggttgaagagta |
47481423 |
T |
|
| Q |
535 |
ttggtttgattgatactgtgcccggaatgaaggccctcgacatgaacactgccgaggatgctattgttaggctcactagggaggttgttcctggaatgat |
634 |
Q |
| |
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|||| |||||||| ||| || |||||||| || || || ||||| ||||| || |||||||||||| | || || ||||| ||||||||||| ||||| |
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| T |
47481422 |
ttggcatgattgatcatgttcctggaatgaaagcacttgatatgaatactgctgaagatgctattgttcgtcttacaagggaagttgttcctggtatgat |
47481323 |
T |
|
| Q |
635 |
agtaactggcatggaggttgctgagattgatggtgctccaagaatggtaa |
684 |
Q |
| |
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|| ||||| ||||| |||||||| ||||||||||| ||||||||||||| |
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| T |
47481322 |
tgttactggtatggaagttgctgaaattgatggtgccccaagaatggtaa |
47481273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 267 - 308
Target Start/End: Original strand, 4220543 - 4220584
Alignment:
| Q |
267 |
atcaagcacgctgctctcttcacttccacaatcatgagcaag |
308 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4220543 |
atcaagcacgctgctctcttaacttccacaatcatgagcaag |
4220584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 81
Target Start/End: Original strand, 4220463 - 4220500
Alignment:
| Q |
44 |
ttaacttattcaatgagttcccagggatgaacaatatt |
81 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||| |
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| T |
4220463 |
ttaacttattcaatgagttcatagggatgaacaatatt |
4220500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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