View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1411-Insertion-4 (Length: 354)

Name: NF1411-Insertion-4
Description: NF1411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1411-Insertion-4
NF1411-Insertion-4
[»] chr5 (1 HSPs)
chr5 (8-354)||(14497334-14497680)
[»] chr8 (8 HSPs)
chr8 (44-117)||(29311064-29311137)
chr8 (44-147)||(29245688-29245791)
chr8 (44-150)||(29215006-29215112)
chr8 (50-117)||(29340548-29340615)
chr8 (35-117)||(29285745-29285827)
chr8 (44-122)||(29357386-29357464)
chr8 (44-117)||(29317581-29317654)
chr8 (56-152)||(29234219-29234315)
[»] chr2 (3 HSPs)
chr2 (58-153)||(30931042-30931137)
chr2 (44-97)||(30910163-30910216)
chr2 (59-152)||(30919556-30919649)
[»] chr3 (1 HSPs)
chr3 (44-150)||(43815048-43815154)


Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 8 - 354
Target Start/End: Complemental strand, 14497680 - 14497334
Alignment:
Q  8 aacaaaagggatgtgtcgagcgagaattttcagtcatggagtttgtcaggtgaatcatgtccagaaggaacaattccaattagaagaacatcggaacaag 107  Q
    |||||||||||||||| ||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||| | |||||||    
T  14497680 aacaaaagggatgtgttgagtgagaattttcagtcatggagcttgtcgggtgaatcatgtccagaaggaacaattccgattagaagaacaacagaacaag 14497581  T
Q  108 acatgttaagggctagttctatcaatacatttggaagaaaattaagaagacgtgttagaagggacacaaatagcaatggacatgaggtatatgcaaatgc 207  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14497580 acatgttaagggcaagttctatcaacacatttggaagaaaattaagaagacgtgttagaagggacacaaatagcaatggacatgaggtatatgcaaatgc 14497481  T
Q  208 aatgcaatttctgaaaattcacaccaagaaattaaagtttctgtttgttttttaagtttattaaannnnnnnggttcatcaaatgaagcaagacattatt 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||    
T  14497480 aatgcaatttctgaaaattcacaccaagaaattaaagtttctgtttgttttttaagtttattaaatttttttggttcatcaaatgaagcaagacattatt 14497381  T
Q  308 aacaaacaaatatactattttcattttcattctttgcttatgttttt 354  Q
    ||||| |||||||||| |||| |||||||||||||||||||||||||    
T  14497380 aacaaccaaatatactgttttgattttcattctttgcttatgttttt 14497334  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 29311064 - 29311137
Alignment:
Q  44 tggagtttgtcaggtgaatcatgtccagaaggaacaattccaattagaagaacatcggaacaagacatgttaag 117  Q
    ||||| ||||| |||||||||||||| ||||||||||||||||||||||||| | ||||||||||| |||||||    
T  29311064 tggagattgtctggtgaatcatgtcctgaaggaacaattccaattagaagaataacggaacaagacttgttaag 29311137  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 147
Target Start/End: Original strand, 29245688 - 29245791
Alignment:
Q  44 tggagtttgtcaggtgaatcatgtccagaaggaacaattccaattagaagaacatcggaacaagacatgttaagggctagttctatcaatacatttggaa 143  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||||||||| | ||| ||||||| | ||| ||| | |||||  |||  |||||||    
T  29245688 tggagtttgtctggtgaatcatgtcctgaaggaacaattccaattagaagaacaacagaagaagacatctcaagagctggatctattgatagttttggaa 29245787  T
Q  144 gaaa 147  Q
    ||||    
T  29245788 gaaa 29245791  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 44 - 150
Target Start/End: Complemental strand, 29215112 - 29215006
Alignment:
Q  44 tggagtttgtcaggtgaatcatgtccagaaggaacaattccaattagaagaacatcggaacaagacatgttaagggctagttctatcaatacatttggaa 143  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||||| |   |||   || |||||||| ||| | ||||| || ||||||||||    
T  29215112 tggagtttttcaggtgaatcatgtccagaaggaacaattccgattagaagaataaaagaaggtgatatgttaagagcttgctctattaacacatttggaa 29215013  T
Q  144 gaaaatt 150  Q
    |||||||    
T  29215012 gaaaatt 29215006  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 50 - 117
Target Start/End: Original strand, 29340548 - 29340615
Alignment:
Q  50 ttgtcaggtgaatcatgtccagaaggaacaattccaattagaagaacatcggaacaagacatgttaag 117  Q
    ||||| |||||||||||||| ||||||||||||||| ||||||||||| | ||||||||| |||||||    
T  29340548 ttgtctggtgaatcatgtcccgaaggaacaattccagttagaagaacaaccgaacaagacttgttaag 29340615  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 35 - 117
Target Start/End: Original strand, 29285745 - 29285827
Alignment:
Q  35 tttcagtcatggagtttgtcaggtgaatcatgtccagaaggaacaattccaattagaagaacatcggaacaagacatgttaag 117  Q
    ||||| || |||||||| || |||||||||||||| || |||||||||||||||||||||| | | ||| ||||||| |||||    
T  29285745 tttcaatcgtggagtttatctggtgaatcatgtcctgatggaacaattccaattagaagaataaccgaagaagacatattaag 29285827  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 44 - 122
Target Start/End: Original strand, 29357386 - 29357464
Alignment:
Q  44 tggagtttgtcaggtgaatcatgtccagaaggaacaattccaattagaagaacatcggaacaagacatgttaagggcta 122  Q
    ||||| ||||| ||||||||||| || ||||||||||||||||||||||||  | | ||||||||| ||||||| ||||    
T  29357386 tggagcttgtctggtgaatcatgccctgaaggaacaattccaattagaagagtaacagaacaagacttgttaagagcta 29357464  T

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Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 29317581 - 29317654
Alignment:
Q  44 tggagtttgtcaggtgaatcatgtccagaaggaacaattccaattagaagaacatcggaacaagacatgttaag 117  Q
    ||||| ||||| |||||||||||||| || |||||||||||| ||||||||| | | ||||||||| |||||||    
T  29317581 tggagcttgtctggtgaatcatgtcccgatggaacaattccagttagaagaataacagaacaagacgtgttaag 29317654  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 152
Target Start/End: Original strand, 29234219 - 29234315
Alignment:
Q  56 ggtgaatcatgtccagaaggaacaattccaattagaagaacatcggaacaagacatgttaagggctagttctatcaatacatttggaagaaaattaa 152  Q
    |||||||||||||| |||| | ||||||||||| ||||||||   || |||||||| ||||| ||  | ||||| |  | |||||||||||||||||    
T  29234219 ggtgaatcatgtcccgaagaatcaattccaattggaagaacaaaagagcaagacatattaagagccggctctattagcaaatttggaagaaaattaa 29234315  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 153
Target Start/End: Complemental strand, 30931137 - 30931042
Alignment:
Q  58 tgaatcatgtccagaaggaacaattccaattagaagaacatcggaacaagacatgttaagggctagttctatcaatacatttggaagaaaattaag 153  Q
    ||||||||||||||||||||||||||||||||||||| ||   ||| ||||||| ||||| ||||| |||||  | || |||||||||||||||||    
T  30931137 tgaatcatgtccagaaggaacaattccaattagaagagcaaaagaagaagacatattaagagctagctctattgacacgtttggaagaaaattaag 30931042  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 30910216 - 30910163
Alignment:
Q  44 tggagtttgtcaggtgaatcatgtccagaaggaacaattccaattagaagaaca 97  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  30910216 tggagtttatcaggtgaatcatgttcagaaggaacaattccaattagaagaaca 30910163  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 59 - 152
Target Start/End: Complemental strand, 30919649 - 30919556
Alignment:
Q  59 gaatcatgtccagaaggaacaattccaattagaagaacatcggaacaagacatgttaagggctagttctatcaatacatttggaagaaaattaa 152  Q
    |||||||||||||||||| |  |||||||||||||||||   ||| ||||||| ||||| ||||| ||||| || || ||||||||||||||||    
T  30919649 gaatcatgtccagaaggatctgttccaattagaagaacaaaagaagaagacatattaagagctagctctattaacacgtttggaagaaaattaa 30919556  T

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Target: chr3 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 44 - 150
Target Start/End: Complemental strand, 43815154 - 43815048
Alignment:
Q  44 tggagtttgtcaggtgaatcatgtccagaaggaacaattccaattagaagaacatcggaacaagacatgttaagggctagttctatcaatacatttggaa 143  Q
    |||||||| || |||||||||||||| ||||| ||||||||||||||||||||| | ||||||||||| ||||| ||| | ||| | || | ||||| ||    
T  43815154 tggagtttatccggtgaatcatgtcctgaaggtacaattccaattagaagaacaacagaacaagacatattaagagctggctctttaaacagatttgaaa 43815055  T
Q  144 gaaaatt 150  Q
    |||||||    
T  43815054 gaaaatt 43815048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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