View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1411-Insertion-6 (Length: 331)
Name: NF1411-Insertion-6
Description: NF1411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1411-Insertion-6 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 8 - 331
Target Start/End: Original strand, 1224411 - 1224736
Alignment:
| Q |
8 |
aaaattagattgtaaaattaac--aaacatattaatacaggaataggtcaatttagaatattcttatttacacattttaggccatcattcaagcttcact |
105 |
Q |
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| T |
1224411 |
aaaattagattgtaaaattaactaaaacatattaatacaggaataggtcaatttagaatattcttatttacacattttaggccatcattcaagcttcact |
1224510 |
T |
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| Q |
106 |
tgagggtttgaaaccaattcttatcttccccttctttaagttccttgtccttcttgttcaccttttgatgagttatcatattcatgtttattatccatgt |
205 |
Q |
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| T |
1224511 |
tgagggtttgaaaccaattcttatcttccccttctttaagttccttgtccttcttgttcaccttttgatgagttatcatattcatgtttattatccatgt |
1224610 |
T |
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| Q |
206 |
cagcaatgatgctcttacaattggtgatgttgttgttgctacaataatgatctactatggtggacgtgacagcaacctgaatttcttggagttctgaagt |
305 |
Q |
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|| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
1224611 |
caacaatgatgctcttacaattggtgttgttgttgttgctacaatcatgatctactatggtggacgtgacaacaacctgaatttcttggagttctgaagt |
1224710 |
T |
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| Q |
306 |
gatttctaaatgagtctcttttttcg |
331 |
Q |
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|||||||||||||||||||||||||| |
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| T |
1224711 |
gatttctaaatgagtctcttttttcg |
1224736 |
T |
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