View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1411-Insertion-8 (Length: 207)

Name: NF1411-Insertion-8
Description: NF1411
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1411-Insertion-8
NF1411-Insertion-8
[»] chr5 (4 HSPs)
chr5 (8-106)||(2628952-2629050)
chr5 (104-207)||(2630745-2630848)
chr5 (145-206)||(22029837-22029898)
chr5 (132-207)||(19824626-19824701)
[»] chr1 (2 HSPs)
chr1 (121-207)||(17923868-17923954)
chr1 (132-207)||(5997473-5997546)
[»] chr2 (1 HSPs)
chr2 (126-207)||(32832561-32832642)
[»] chr3 (3 HSPs)
chr3 (126-184)||(51447655-51447713)
chr3 (145-207)||(39485457-39485519)
chr3 (147-205)||(24581522-24581579)
[»] chr4 (1 HSPs)
chr4 (140-207)||(51853508-51853575)
[»] chr7 (3 HSPs)
chr7 (138-207)||(11369034-11369104)
chr7 (145-207)||(37685177-37685239)
chr7 (138-207)||(33884023-33884092)
[»] chr8 (1 HSPs)
chr8 (135-203)||(14847452-14847520)
[»] chr6 (2 HSPs)
chr6 (145-207)||(3037361-3037423)
chr6 (166-207)||(457691-457732)


Alignment Details
Target: chr5 (Bit Score: 99; Significance: 5e-49; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 2628952 - 2629050
Alignment:
Q  8 taatgcaccattagtccagggaaataatctcattggccacaaacctgtgatttccgccaaaatcaactgaaaattttctcaatttggtcatataagatg 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2628952 taatgcaccattagtccagggaaataatctcattggccacaaacctgtgatttccgccaaaatcaactgaaaattttctcaatttggtcatataagatg 2629050  T

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Target: chr5; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 104 - 207
Target Start/End: Original strand, 2630745 - 2630848
Alignment:
Q  104 atgccacgattttgggatgacgcttcaatgcctttgtctttggtgcctttagttcatcttttatgagagagaatgttggatgaatgataaacataaatta 203  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2630745 atgccacaattttgggatgacgcttcaatgcctttgcctttggtgcctttagttcatcttttatgagagagaatgttggatgaatgataaacataaatta 2630844  T
Q  204 ttta 207  Q
    ||||    
T  2630845 ttta 2630848  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 22029837 - 22029898
Alignment:
Q  145 ggtgcctttagttcatcttttatgagagagaatgttggatgaatgataaacataaattattt 206  Q
    |||| |||||||| || ||  |||||||||||||||||||||||||| || |||||||||||    
T  22029837 ggtgtctttagtttattttagatgagagagaatgttggatgaatgattaaaataaattattt 22029898  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 132 - 207
Target Start/End: Complemental strand, 19824701 - 19824626
Alignment:
Q  132 tgcctttgtctttggtgcctttagttcatcttttatgagagagaatgttggatgaatgataaacataaattattta 207  Q
    ||||||||  ||||||||||||  || || ||  ||||||||||||||| |||||||||| || ||||||||||||    
T  19824701 tgcctttggttttggtgcctttgatttattttagatgagagagaatgttagatgaatgattaaaataaattattta 19824626  T

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Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 121 - 207
Target Start/End: Complemental strand, 17923954 - 17923868
Alignment:
Q  121 tgacgcttcaatgcctttgtctttggtgcctttagttcatcttttatgagagagaatgttggatgaatgataaacataaattattta 207  Q
    |||| ||||| || ||||| |||||||| ||||||||||| ||||||||||||||||||||||||||| || || ||||||||||||    
T  17923954 tgacacttcagtgtctttgcctttggtgtctttagttcattttttatgagagagaatgttggatgaataattaaaataaattattta 17923868  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 207
Target Start/End: Complemental strand, 5997546 - 5997473
Alignment:
Q  132 tgcctttgtctttggtgcctttagttcatcttttatgagagagaatgttggatgaatgataaacataaattattta 207  Q
    |||||||  ||| |||||||||||||||| ||| ||||||||  ||||||||||||||||||| | ||||||||||    
T  5997546 tgcctttaccttcggtgcctttagttcatttttgatgagaga--atgttggatgaatgataaaaagaaattattta 5997473  T

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Target: chr2 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 126 - 207
Target Start/End: Original strand, 32832561 - 32832642
Alignment:
Q  126 cttcaatgcctttgtctttggtgcctttagttcatcttttatgagagagaatgttggatgaatgataaacataaattattta 207  Q
    ||||| |||||||| ||||||||||||| |||||| ||  |||||||||||||||||||||||||| || ||||||||||||    
T  32832561 cttcagtgcctttggctttggtgcctttggttcattttagatgagagagaatgttggatgaatgattaaaataaattattta 32832642  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 51447655 - 51447713
Alignment:
Q  126 cttcaatgcctttgtctttggtgcctttagttcatcttttatgagagagaatgttggat 184  Q
    |||||||||||||| |||||||| ||||||||||| ||| |||||||||||||||||||    
T  51447655 cttcaatgcctttggctttggtgtctttagttcatttttgatgagagagaatgttggat 51447713  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 207
Target Start/End: Original strand, 39485457 - 39485519
Alignment:
Q  145 ggtgcctttagttcatcttttatgagagagaatgttggatgaatgataaacataaattattta 207  Q
    |||||||||||||||| ||  ||||||||||| |||||||||||||| || ||||||||||||    
T  39485457 ggtgcctttagttcattttagatgagagagaaggttggatgaatgattaaaataaattattta 39485519  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 147 - 205
Target Start/End: Original strand, 24581522 - 24581579
Alignment:
Q  147 tgcctttagttcatcttttatgagagagaatgttggatgaatgataaacataaattatt 205  Q
    |||||||||||||| ||| |||| ||||||||||||||||||||| || ||||||||||    
T  24581522 tgcctttagttcat-tttgatgaaagagaatgttggatgaatgattaaaataaattatt 24581579  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 51853575 - 51853508
Alignment:
Q  140 tctttggtgcctttagttcatcttttatgagagagaatgttggatgaatgataaacataaattattta 207  Q
    |||| |||||||||||||||| |||||||||||||||||||| |||||| || || |||| |||||||    
T  51853575 tcttcggtgcctttagttcattttttatgagagagaatgttgaatgaataattaaaataacttattta 51853508  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 11369034 - 11369104
Alignment:
Q  138 tgtctttg-gtgcctttagttcatcttttatgagagagaatgttggatgaatgataaacataaattattta 207  Q
    |||||||| ||||||||| ||||| ||  ||||||||||||||||||| |||||| || ||||||||||||    
T  11369034 tgtctttgagtgcctttaattcattttagatgagagagaatgttggataaatgattaaaataaattattta 11369104  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 145 - 207
Target Start/End: Original strand, 37685177 - 37685239
Alignment:
Q  145 ggtgcctttagttcatcttttatgagagagaatgttggatgaatgataaacataaattattta 207  Q
    ||||||||| |||||| ||  | |||||||||||||||||||||||| || ||||||||||||    
T  37685177 ggtgcctttggttcattttagacgagagagaatgttggatgaatgattaaaataaattattta 37685239  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 33884023 - 33884092
Alignment:
Q  138 tgtctttggtgcctttagttcatcttttatgagagagaatgttggatgaatgataaacataaattattta 207  Q
    ||||||||||  |||| |||||| ||||||||||||||||| |||||| || || || ||||||||||||    
T  33884023 tgtctttggtatctttcgttcattttttatgagagagaatggtggatggataattaaaataaattattta 33884092  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 203
Target Start/End: Complemental strand, 14847520 - 14847452
Alignment:
Q  135 ctttgtctttggtgcctttagttcatcttttatgagagagaatgttggatgaatgataaacataaatta 203  Q
    ||||| ||||||||| |||||||||  ||  ||||||||||||||||| |||||||| || ||||||||    
T  14847520 ctttgactttggtgcttttagttcagtttagatgagagagaatgttgggtgaatgattaaaataaatta 14847452  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 207
Target Start/End: Original strand, 3037361 - 3037423
Alignment:
Q  145 ggtgcctttagttcatcttttatgagagagaatgttggatgaatgataaacataaattattta 207  Q
    ||||||||| |||| | ||| |||||||| ||||||||||||||||| || ||||||| ||||    
T  3037361 ggtgcctttggttcttttttgatgagagaaaatgttggatgaatgattaaaataaatttttta 3037423  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 457732 - 457691
Alignment:
Q  166 atgagagagaatgttggatgaatgataaacataaattattta 207  Q
    ||||||||||||| |||||||||||| || ||||||||||||    
T  457732 atgagagagaatgatggatgaatgattaaaataaattattta 457691  T

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