View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14110_high_9 (Length: 252)
Name: NF14110_high_9
Description: NF14110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14110_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 33630688 - 33630452
Alignment:
| Q |
1 |
tctgcagtcgtggtctgccattgtacaccactacactacacacactggagtatattagagagcaaagaatggcctttgaaactgcacagaaggcaaaaat |
100 |
Q |
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| T |
33630688 |
tctgcagtcgtggtctgccatcgtacaccactacactacacacactggagtatattagagagcaaagaatggcctttgaaactgcacagaaggcaaaaat |
33630589 |
T |
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| Q |
101 |
ataggctacaagtgaactaaatcgtgtaaatacattctcctgcaaaccgagcgagcgagaccaggactagaggttgaagacaacctcctcgaaaaaattt |
200 |
Q |
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|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33630588 |
ataggctacaagtgaactaagtcgtgtaaactcattctcctgcaaaccgagcgagcgagaccaggactagaggttgaagacaacctcctcgaaaatattt |
33630489 |
T |
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| Q |
201 |
gttaatgcccccagttgggttgtcccattgagcaacc |
237 |
Q |
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| T |
33630488 |
gttaatgcccccagttgggttgtcccattgagcaacc |
33630452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 7 - 120
Target Start/End: Original strand, 29195127 - 29195243
Alignment:
| Q |
7 |
gtcgtggtctgccattgtacaccacta---cactacacacactggagtatattagagagcaaagaatggcctttgaaactgcacagaaggcaaaaatata |
103 |
Q |
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| T |
29195127 |
gtcgtgatctgccatcgttcaccactagtccactacacacactggagtatattagggagcaaagaatgacatttgaaactgcaaaaaaggcaaaaatata |
29195226 |
T |
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| Q |
104 |
ggctacaagtgaactaa |
120 |
Q |
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| T |
29195227 |
gggtagaagcgaactaa |
29195243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 26666322 - 26666370
Alignment:
| Q |
34 |
cactacacacactggagtatattagagagcaaagaatggcctttgaaac |
82 |
Q |
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|||||||||||| |||||||||||||||||||| |||||| |||||||| |
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| T |
26666322 |
cactacacacaccggagtatattagagagcaaataatggcatttgaaac |
26666370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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