View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14110_low_1 (Length: 812)
Name: NF14110_low_1
Description: NF14110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14110_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-120; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 288 - 577
Target Start/End: Complemental strand, 46090893 - 46090603
Alignment:
| Q |
288 |
caataattgttcagtattgaattgagcctctaatgtgaagggtccaagcttcttaatc-aattaaagtcgcatggtataagatcatgcagtgtctgcaat |
386 |
Q |
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| T |
46090893 |
caataattgttcagtattgaattgagcctctaatgtgaagggtccaagcttcttaatccaattaaagtcgcatggtataagatcatgcagtgtctgcaat |
46090794 |
T |
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| Q |
387 |
ttaagagnnnnnnnnnaaacaatattcaaatattattttaaaaatcacaagtggtccnnnnnnnntgtaattcgaatttcgtttacattaatgaaattga |
486 |
Q |
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| T |
46090793 |
ttaagagtttttttttaaacaatattcaaatattattttaaaaatcacaagtggtccaaaaaaaatgtaattcgaatttcgtttacattaatgaaattga |
46090694 |
T |
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| Q |
487 |
attgtaactgcagcaattaaatggcagataagacaagatagtacctgcaatgctaagaataatgatggcagagacaaatagaagaaaccaa |
577 |
Q |
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| T |
46090693 |
attgtaactgcaactattaaatggcagataagacaaggtagtacctgcaatgctaagaataatgatggcagagacaaatagaagaaaccaa |
46090603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 180; E-Value: 9e-97
Query Start/End: Original strand, 5 - 213
Target Start/End: Complemental strand, 46091175 - 46090967
Alignment:
| Q |
5 |
caatagtgttaaatctcttgagtgagaattttgtcacttattgcagtcctacccgatacaagatattaatctttgcggttgcgcgccaattcaaaagagg |
104 |
Q |
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| T |
46091175 |
caatagtgttaaatctcttgagtgagaattttgtcacttattgcagtcctacccgacataagatattaatctttgcggttgcgcgccaattcaaaagagg |
46091076 |
T |
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| Q |
105 |
nnnnnnngtttttgaaatattatttccaaattgataaattttaatattaaataagatgaacctgattagaaaaacttcactagctagattactggcatta |
204 |
Q |
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| T |
46091075 |
aaaaaaagtttttgaaatattatttccaaattgataaattttaatattaaataagatgaacctgattagaaaaacttcactagctagattactggcatta |
46090976 |
T |
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| Q |
205 |
attgctctc |
213 |
Q |
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| T |
46090975 |
attgctctc |
46090967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 677 - 796
Target Start/End: Complemental strand, 46090503 - 46090384
Alignment:
| Q |
677 |
ctttgacaagagggaagagtcagaacaacagattgttgctttgaggttaaggcaacccttctggtaatggtaaaacgcacaacagttgttaattggccgg |
776 |
Q |
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| T |
46090503 |
ctttgacaagagggaagagtcggaacaacagattgttgctttgaggttaaggcaacccttctggtaatggtaaaacgcacaacagttgttaattggccgg |
46090404 |
T |
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| Q |
777 |
agtttttaggttacataggt |
796 |
Q |
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| T |
46090403 |
agtttttaggttacataggt |
46090384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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