View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14110_low_2 (Length: 614)
Name: NF14110_low_2
Description: NF14110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14110_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 362 - 604
Target Start/End: Complemental strand, 47140133 - 47139891
Alignment:
| Q |
362 |
tattaacttacgatcggatgaaacttattctataagtaattagaattgcactaaactctgacgtgtgattaagtttactcgaaataccctccaccaatat |
461 |
Q |
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| T |
47140133 |
tattatcttacgatcggatgaaacttattctataagtaattagaattgcactaaactctgacgtgtgattaagtttactcgaaataccctccaccaatat |
47140034 |
T |
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| Q |
462 |
cttgatatctctaaagattgcttcgtccacaattgcacttactttgcctatcaccagagccacccaccactctgctgcctcacaaccactatcatgtctt |
561 |
Q |
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| T |
47140033 |
cttgatatctctaaagattgcctcgtccacaattgcacttactttgcctatcaccagagccacccaccactctgctgcctcacaaccactatcatgtctt |
47139934 |
T |
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| Q |
562 |
tcgcttgttgtttctcgaccgcggcctgctgaaccctatgctt |
604 |
Q |
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| T |
47139933 |
tcgcttgttgttcctcgaccgcggcctgctgaaccctctgctt |
47139891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 20 - 230
Target Start/End: Complemental strand, 47140511 - 47140299
Alignment:
| Q |
20 |
aaagtcagacaagcaaactctatgaatggatcagaaagctagtggatgannnnnnnnn--aacgatctagtggatgatttattggatttcaaatttcaat |
117 |
Q |
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| T |
47140511 |
aaagtcagacaagccaactctatgaatggatcacaaagctagtggatgatttttttttttaatgatctagtggatgatttattggatttcaaatttcaat |
47140412 |
T |
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| Q |
118 |
cggaacagaaaaataaaacaacgtcctttattgggactcatgaaatgaaagctttctacagatcgtatccatcctttattggtcttattgcattctgtat |
217 |
Q |
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| T |
47140411 |
cggaacagaaaaataaaacaaagtcctttattgggactcatgaaatgaaagctttctacagatcgtatccatcctttattggtcttattgcattctgtat |
47140312 |
T |
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| Q |
218 |
gagtatgacctaa |
230 |
Q |
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| T |
47140311 |
gagtatgacctaa |
47140299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 259 - 364
Target Start/End: Complemental strand, 47140278 - 47140173
Alignment:
| Q |
259 |
acatcttgaacctgaagtttataaattaacattgcagtatttcctaaaaacgattttttatacagaaacaaagtaatcataatacaaggaatgtaaataa |
358 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47140278 |
acatcttgaacctgaagtttataaattaacattgcattatttccttaaaacgattttttatacagaaacaaagtaatcataatacaaggaatgtaaataa |
47140179 |
T |
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| Q |
359 |
aagtat |
364 |
Q |
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|||||| |
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| T |
47140178 |
aagtat |
47140173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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