View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14110_low_3 (Length: 539)
Name: NF14110_low_3
Description: NF14110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14110_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 18 - 525
Target Start/End: Original strand, 48749282 - 48749802
Alignment:
| Q |
18 |
gaaaattcaaacaaagaatctgtgaaagtttatgaagagaaagttcttgtcattatggctggtgatcagaacccaacgtttttagctacacctgtttttc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48749282 |
gaaaattcaaacaaagaatctgtgaaagtttatgaagagaaagttcttgtcattatggctggtgatcagaacccaacgtttttagctacacctgtttttc |
48749381 |
T |
|
| Q |
118 |
caaaatcatcttctgttatgaatctagatgcgaatcactcggatgaacaacgcgaaaaccatgaaactgttgagaaatcagagaaagaagaaatggaaac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48749382 |
caaaatcatcttctgttatgaatctagatgcgaatcactcggatgaacaacgcgaaaaccatgaaactgttgagaaatcagagaaagaagaaatggaaac |
48749481 |
T |
|
| Q |
218 |
agaagaacagagtgagtcagtaacataatttgtttt------------------tattttcttccatgattcgggaagtgtaaatttaagatgagataaa |
299 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48749482 |
agaagaacagagtcagtcagtaacataatttgtttttattttcttaattttatctattttcttccatgattcgggaagtgtaaatttaagatgagataaa |
48749581 |
T |
|
| Q |
300 |
tttgttataatctgactgaaattaataatttgttataatctttggtgttatgacttatgaatgattttgagcttgagaaaaaaggaagtaattatggttg |
399 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48749582 |
tttgttataat----ctgaaattaataatttcttataatctttggtgttatgacttatgaatgattttgagcttgagaaaaaaggaagtaattatggttg |
48749677 |
T |
|
| Q |
400 |
atgagtagtagtgagaagcaagtaaacagaaaagtgtatgactgcgtaacgaaatttgtgtgcttaaaataaaaatgaaatatagatgacgtaacc-gaa |
498 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
48749678 |
atgagtagtagtgagaagcaagtaaacagaacagtgtatgactgcgtaacgaaatttgtgtgcttaaaataaaaatgaa--atagatgacgtaaccggaa |
48749775 |
T |
|
| Q |
499 |
taataaagacaaattataccgtctctg |
525 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
48749776 |
taataaagacaaattataccgtctctg |
48749802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 112
Target Start/End: Complemental strand, 3425762 - 3425695
Alignment:
| Q |
45 |
gtttatgaagagaaagttcttgtcattatggctggtgatcagaacccaacgtttttagctacacctgt |
112 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||| || |||||||||| || || ||||| ||||| |
|
|
| T |
3425762 |
gtttatgaagagaatatccttgtcattatggctggtaatgagaacccaacattcttggctacccctgt |
3425695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University