View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14110_low_5 (Length: 445)

Name: NF14110_low_5
Description: NF14110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14110_low_5
NF14110_low_5
[»] chr8 (15 HSPs)
chr8 (116-428)||(18413538-18413849)
chr8 (11-111)||(18413402-18413502)
chr8 (112-200)||(28485464-28485552)
chr8 (127-203)||(32022941-32023017)
chr8 (116-203)||(27799293-27799380)
chr8 (112-213)||(45218600-45218699)
chr8 (124-199)||(16314370-16314445)
chr8 (112-193)||(9953752-9953833)
chr8 (116-196)||(37016402-37016482)
chr8 (125-203)||(35689486-35689564)
chr8 (141-198)||(12212133-12212190)
chr8 (141-198)||(12456561-12456618)
chr8 (112-152)||(9009025-9009065)
chr8 (112-180)||(29011082-29011150)
chr8 (112-200)||(45524959-45525047)
[»] chr3 (11 HSPs)
chr3 (112-198)||(8475165-8475251)
chr3 (125-198)||(13809093-13809165)
chr3 (125-198)||(27243056-27243129)
chr3 (126-179)||(30624661-30624714)
chr3 (125-198)||(46237142-46237215)
chr3 (130-164)||(138808-138842)
chr3 (116-162)||(9774212-9774258)
chr3 (130-176)||(44844014-44844060)
chr3 (125-214)||(37600226-37600315)
chr3 (125-198)||(50661618-50661691)
chr3 (112-212)||(49720085-49720185)
[»] chr4 (12 HSPs)
chr4 (112-200)||(27654486-27654574)
chr4 (112-200)||(5994951-5995039)
chr4 (126-198)||(33996032-33996104)
chr4 (112-169)||(46395369-46395426)
chr4 (125-198)||(47237837-47237910)
chr4 (125-212)||(48608077-48608164)
chr4 (124-193)||(47109231-47109300)
chr4 (125-181)||(35606694-35606750)
chr4 (124-196)||(43515312-43515384)
chr4 (125-190)||(43958170-43958235)
chr4 (112-204)||(24106730-24106822)
chr4 (112-160)||(55648446-55648494)
[»] chr6 (8 HSPs)
chr6 (118-212)||(12690249-12690343)
chr6 (125-198)||(12794910-12794983)
chr6 (126-186)||(4595765-4595825)
chr6 (112-200)||(25326840-25326928)
chr6 (112-200)||(26159375-26159463)
chr6 (125-214)||(19090311-19090400)
chr6 (125-198)||(35128819-35128892)
chr6 (126-174)||(2675930-2675978)
[»] chr7 (14 HSPs)
chr7 (112-200)||(39523584-39523672)
chr7 (125-198)||(17354623-17354696)
chr7 (112-162)||(38065401-38065451)
chr7 (126-191)||(39254101-39254166)
chr7 (125-193)||(26703536-26703604)
chr7 (112-168)||(29462085-29462141)
chr7 (112-184)||(33852553-33852625)
chr7 (116-199)||(2911771-2911854)
chr7 (126-169)||(10934062-10934105)
chr7 (125-199)||(24539219-24539293)
chr7 (126-164)||(28713061-28713099)
chr7 (118-211)||(21102592-21102685)
chr7 (126-198)||(32212966-32213038)
chr7 (117-209)||(37489902-37489994)
[»] chr1 (10 HSPs)
chr1 (112-200)||(18157047-18157135)
chr1 (112-199)||(14341004-14341091)
chr1 (112-208)||(28274787-28274883)
chr1 (127-212)||(11987623-11987708)
chr1 (125-198)||(44739129-44739202)
chr1 (118-200)||(47218264-47218346)
chr1 (112-160)||(21970361-21970409)
chr1 (126-169)||(28218145-28218188)
chr1 (125-212)||(32848679-32848766)
chr1 (112-213)||(21977183-21977284)
[»] chr5 (12 HSPs)
chr5 (116-216)||(1649543-1649643)
chr5 (127-199)||(36494233-36494306)
chr5 (112-212)||(32309477-32309577)
chr5 (125-212)||(40971549-40971636)
chr5 (126-164)||(43405438-43405476)
chr5 (125-185)||(32050331-32050391)
chr5 (112-159)||(33854050-33854097)
chr5 (112-178)||(6529957-6530023)
chr5 (125-179)||(10253178-10253232)
chr5 (125-198)||(26072114-26072187)
chr5 (125-162)||(27592548-27592585)
chr5 (125-162)||(30325970-30326007)
[»] chr2 (17 HSPs)
chr2 (125-198)||(1110209-1110282)
chr2 (137-201)||(9682759-9682823)
chr2 (112-198)||(31494219-31494303)
chr2 (112-199)||(19190640-19190729)
chr2 (111-196)||(43400146-43400231)
chr2 (130-198)||(15508925-15508993)
chr2 (112-168)||(19953436-19953492)
chr2 (112-200)||(37077969-37078057)
chr2 (112-179)||(30706299-30706366)
chr2 (126-168)||(29795846-29795888)
chr2 (141-198)||(11729715-11729772)
chr2 (126-191)||(34142236-34142301)
chr2 (125-198)||(42182900-42182973)
chr2 (125-169)||(3772264-3772307)
chr2 (147-195)||(13341745-13341793)
chr2 (126-198)||(26767858-26767930)
chr2 (126-198)||(36471935-36472007)
[»] scaffold0005 (1 HSPs)
scaffold0005 (112-200)||(296845-296933)
[»] scaffold0886 (1 HSPs)
scaffold0886 (124-180)||(3274-3330)


Alignment Details
Target: chr8 (Bit Score: 182; Significance: 3e-98; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 116 - 428
Target Start/End: Original strand, 18413538 - 18413849
Alignment:
Q  116 ggttccaattaaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgtccttagtattcctcttt 215  Q
    ||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  18413538 ggttccacttaaagttgtgagacatatattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgtcattaatattcctcttt 18413637  T
Q  216 gcataatgaatgcactgtgcaatcggtcaatcctcaaccgtccaatcaagatcgaaaaaatcctaattaaatgtatacnnnnnnnnnnnnnnnnngataa 315  Q
    ||| |||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||                 |||||    
T  18413638 gcagaatgaatgcactctgcaatcggtcaatcctcaaccgtccaatcaagatcg-aacaatcctaattaaatgtatactttttaattttctttttgataa 18413736  T
Q  316 ttatagcgaatgtgagtactaaattgtttgatcttaatcagacggacaaaaatcattaatcacattagcgattgcacaaaaacccaattcattggaaata 415  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||| |||||||| | | ||||| |||||| |||||||||||||||||||| || |||    
T  18413737 ttataccgaatgtgagtactaaactgtttgatcttaatcagacggataaaaatcactgaccacatcagcgatcgcacaaaaacccaattcatttgatata 18413836  T
Q  416 aacttgattgtat 428  Q
    |||||||||||||    
T  18413837 aacttgattgtat 18413849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 18413402 - 18413502
Alignment:
Q  11 taattcttgatatagacgaatccttattcagtgtattcgcggaagagtagggctaacaacactcactttttaacactatcttgaacatttactttcttat 110  Q
    |||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||| |||||| |||||||| | | || |||||||||||| ||||    
T  18413402 taattcttgatatagacgaatcctcattcagtgtatttgtggaagagtagggctaacaatactcaccttttaacatttttttaaacatttacttttttat 18413501  T
Q  111 t 111  Q
    |    
T  18413502 t 18413502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 112 - 200
Target Start/End: Original strand, 28485464 - 28485552
Alignment:
Q  112 aatgggttccaattaaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgtcc 200  Q
    ||||||||||| ||||||||||| |||||||||||||||||| |||||| ||||| |  ||||| | || |||||||||||||||||||    
T  28485464 aatgggttccacttaaagtggtgggacatacattaatttcatccaataagagaataagtgttagggggattgtttaaaagagagtgtcc 28485552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 32022941 - 32023017
Alignment:
Q  127 aagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgtcctta 203  Q
    |||||||||| ||||||||||||| ||||||||||||| |||| |||| ||||| |||||||||  |||||||||||    
T  32022941 aagtggtgaggcatacattaattttattcaataaaagattgaatgttaaagagagtgtttaaaaatgagtgtcctta 32023017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 116 - 203
Target Start/End: Original strand, 27799293 - 27799380
Alignment:
Q  116 ggttccaattaaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgtcctta 203  Q
    ||||||| ||||||||||| ||||||||||| ||||||  ||||||||| ||| ||||||||| | |||| |||||||||| ||||||    
T  27799293 ggttccacttaaagtggtgggacatacattagtttcatcaaataaaagagtgatcgttagagaaattgttgaaaagagagtatcctta 27799380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 112 - 213
Target Start/End: Original strand, 45218600 - 45218699
Alignment:
Q  112 aatgggttccaattaaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgtccttagtattcct 211  Q
    ||||||||||| ||||||||||| ||||  |||| ||||||| ||||||||||  ||  |||||||||  ||| ||||||||||||||| ||| ||||||    
T  45218600 aatgggttccacttaaagtggtgggacacgcattgatttcatccaataaaagagcgagtgttagagag--tgtataaaagagagtgtccctagcattcct 45218697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 124 - 199
Target Start/End: Original strand, 16314370 - 16314445
Alignment:
Q  124 ttaaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgtc 199  Q
    |||||||||||  |||||||||||||| || |||||||||| |||  || ||||||||||||||||| | ||||||    
T  16314370 ttaaagtggtggaacatacattaattttatccaataaaagagtgagtgtaagagagaatgtttaaaataaagtgtc 16314445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 112 - 193
Target Start/End: Original strand, 9953752 - 9953833
Alignment:
Q  112 aatgggttccaattaaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagag 193  Q
    |||| |||||| ||||||||||| |||| ||||||||||||| | |||| ||| |||  |||||| | ||||||||||||||    
T  9953752 aatgagttccacttaaagtggtgggacacacattaatttcatcccataagagagtgagtgttagaaaaaatgtttaaaagag 9953833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 196
Target Start/End: Complemental strand, 37016482 - 37016402
Alignment:
Q  116 ggttccaattaaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagt 196  Q
    ||||||| ||||| |||||  |||| ||||||||||||||||||||||||| |  ||||||| || |||| |||| |||||    
T  37016482 ggttccacttaaaatggtggaacatgcattaatttcattcaataaaagaataacggttagagtgagtgttgaaaatagagt 37016402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 203
Target Start/End: Complemental strand, 35689564 - 35689486
Alignment:
Q  125 taaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgtcctta 203  Q
    |||||||||| |||||||||| ||||||| |||||||| | |||  | |||||||| || | |||||||||||| ||||    
T  35689564 taaagtggtgggacatacattgatttcatccaataaaaaagtgagtgctagagagagtgctcaaaagagagtgttctta 35689486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 12212190 - 12212133
Alignment:
Q  141 acattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgt 198  Q
    ||||| ||||||  ||| |||||| |||| ||||||||||||||| ||||||||||||    
T  12212190 acattgatttcacccaagaaaagagtgaatgttagagagaatgttgaaaagagagtgt 12212133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 12456618 - 12456561
Alignment:
Q  141 acattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgt 198  Q
    ||||| ||||||  ||| |||||| |||| ||||||||||||||| ||||||||||||    
T  12456618 acattgatttcacccaagaaaagagtgaatgttagagagaatgttgaaaagagagtgt 12456561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 9009025 - 9009065
Alignment:
Q  112 aatgggttccaattaaagtggtgagacatacattaatttca 152  Q
    ||||||||||| |||||||| || |||||||||||||||||    
T  9009025 aatgggttccacttaaagtgatgggacatacattaatttca 9009065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 180
Target Start/End: Complemental strand, 29011150 - 29011082
Alignment:
Q  112 aatgggttccaattaaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagaga 180  Q
    ||||||||||| | ||||||||  ||||||||||| |||||| || ||| |||||||  ||||||||||    
T  29011150 aatgggttccattcaaagtggtaggacatacattagtttcatccattaagagaatgagtgttagagaga 29011082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 200
Target Start/End: Original strand, 45524959 - 45525047
Alignment:
Q  112 aatgggttccaattaaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgtcc 200  Q
    ||||||||||| | ||||||||| | |||||||| |||| || |||||| | |||||  |||  ||||| |||| ||||||||||||||    
T  45524959 aatgggttccactcaaagtggtgggtcatacattgattttatccaataagaaaatgagtgttgaagagagtgttgaaaagagagtgtcc 45525047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 112 - 198
Target Start/End: Complemental strand, 8475251 - 8475165
Alignment:
Q  112 aatgggttccaattaaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgt 198  Q
    ||||||||||| |||||| |||||||||||||||| |||||| |||||| ||| |||| ||||||||  ||||||||||||||||||    
T  8475251 aatgggttccatttaaagcggtgagacatacattagtttcatccaataagagagtgaatgttagagaagatgtttaaaagagagtgt 8475165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 125 - 198
Target Start/End: Complemental strand, 13809165 - 13809093
Alignment:
Q  125 taaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgt 198  Q
    |||| ||||| |||||||||| |||| || |||||||||| |||| |||||||||| ||| |||||||||||||    
T  13809165 taaaatggtgggacatacattgattttatccaataaaagagtgaa-gttagagagagtgtgtaaaagagagtgt 13809093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 125 - 198
Target Start/End: Complemental strand, 27243129 - 27243056
Alignment:
Q  125 taaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgt 198  Q
    |||||||||| ||||| |||| |||| || |||||||||| |||  |||||||||| |||| ||||||||||||    
T  27243129 taaagtggtgggacatgcattgattttatccaataaaagagtgagtgttagagagagtgttcaaaagagagtgt 27243056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 30624714 - 30624661
Alignment:
Q  126 aaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagag 179  Q
    |||||||||| |||||||||||||| ||||||||||||| |||  |||||||||    
T  30624714 aaagtggtgaaacatacattaattttattcaataaaagagtgagtgttagagag 30624661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 125 - 198
Target Start/End: Original strand, 46237142 - 46237215
Alignment:
Q  125 taaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgt 198  Q
    |||||||||| |||||||||| ||||||| |||||||||| |||  | |||||||| || | ||||||||||||    
T  46237142 taaagtggtgggacatacattgatttcatccaataaaagagtgattgctagagagagtgctcaaaagagagtgt 46237215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 164
Target Start/End: Complemental strand, 138842 - 138808
Alignment:
Q  130 tggtgagacatacattaatttcattcaataaaaga 164  Q
    |||||||||||||||| ||||||||||||||||||    
T  138842 tggtgagacatacattgatttcattcaataaaaga 138808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 9774258 - 9774212
Alignment:
Q  116 ggttccaattaaagtggtgagacatacattaatttcattcaataaaa 162  Q
    ||||||| ||||||||||| ||| |||||||||||||| ||||||||    
T  9774258 ggttccacttaaagtggtgggacgtacattaatttcatccaataaaa 9774212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 176
Target Start/End: Complemental strand, 44844060 - 44844014
Alignment:
Q  130 tggtgagacatacattaatttcattcaataaaagaatgaacgttaga 176  Q
    ||||| |||||||||| |||| |||||||||||||||||| ||||||    
T  44844060 tggtgggacatacatttattttattcaataaaagaatgaatgttaga 44844014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 214
Target Start/End: Original strand, 37600226 - 37600315
Alignment:
Q  125 taaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgtccttagtattcctctt 214  Q
    |||||||||| |||||||||| ||||||  |||||||||| ||   | |||||||| || | ||||||||||||  |||| |||||||||    
T  37600226 taaagtggtgggacatacattgatttcacccaataaaagagtgggtgctagagagagtgctcaaaagagagtgttgttagcattcctctt 37600315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 198
Target Start/End: Original strand, 50661618 - 50661691
Alignment:
Q  125 taaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgt 198  Q
    |||||||||| ||||| |||| |||| ||  ||||||||| | |  |||||||||| |||||||||||||||||    
T  50661618 taaagtggtgggacatgcattgattttatctaataaaagagtaagtgttagagagagtgtttaaaagagagtgt 50661691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 212
Target Start/End: Original strand, 49720085 - 49720185
Alignment:
Q  112 aatgggttccaattaaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgtccttagtattcct 211  Q
    ||||||||||| ||||| ||||| || ||||||| |||| || ||||||   | |||  ||| |||||| |||| ||||| |||||||||||| ||||||    
T  49720085 aatgggttccacttaaaatggtgggatatacattcatttaatccaataagcaagtgagtgtttgagagagtgttgaaaagtgagtgtccttagcattcct 49720184  T
Q  212 c 212  Q
    |    
T  49720185 c 49720185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 112 - 200
Target Start/End: Complemental strand, 27654574 - 27654486
Alignment:
Q  112 aatgggttccaattaaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgtcc 200  Q
    ||||||||||| ||||||||||| ||||||||||| ||| || |||||| |||||||  |||||||||| |||| ||||||||||||||    
T  27654574 aatgggttccacttaaagtggtgggacatacattagttttatccaataagagaatgagtgttagagagagtgttgaaaagagagtgtcc 27654486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 112 - 200
Target Start/End: Original strand, 5994951 - 5995039
Alignment:
Q  112 aatgggttccaattaaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgtcc 200  Q
    ||||||||||| ||||||||||||| ||||||||| ||| || |||||| |||||||  |||| ||||| |||| |||||||| |||||    
T  5994951 aatgggttccacttaaagtggtgagtcatacattagttttatccaataagagaatgagtgttaaagagagtgttgaaaagagaatgtcc 5995039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 126 - 198
Target Start/End: Original strand, 33996032 - 33996104
Alignment:
Q  126 aaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgt 198  Q
    |||||||||||||||||||| |||| ||| ||||||||| |||| |||||||||  |||| ||||||||||||    
T  33996032 aaagtggtgagacatacattgatttgatttaataaaagagtgaatgttagagagtgtgttgaaaagagagtgt 33996104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 46395426 - 46395369
Alignment:
Q  112 aatgggttccaattaaagtggtgagacatacattaatttcattcaataaaagaatgaa 169  Q
    ||||| ||||||||||||||||| |||||||||||||||||| |||||| ||| ||||    
T  46395426 aatggattccaattaaagtggtgggacatacattaatttcatgcaataagagagtgaa 46395369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 125 - 198
Target Start/End: Original strand, 47237837 - 47237910
Alignment:
Q  125 taaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgt 198  Q
    |||||||||| |||||| ||| ||||||| |||||||||| |||| | |||||||| |||| ||||||||||||    
T  47237837 taaagtggtgggacatatattgatttcatccaataaaagagtgaatgctagagagagtgttcaaaagagagtgt 47237910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 125 - 212
Target Start/End: Complemental strand, 48608164 - 48608077
Alignment:
Q  125 taaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgtccttagtattcctc 212  Q
    |||||||||| ||||||||||||||| || |||||||||| |||| |||| ||| | |  ||||||||||||||  |||| |||||||    
T  48608164 taaagtggtgggacatacattaattttatccaataaaagagtgaatgttaaagaaagtacttaaaagagagtgttgttagcattcctc 48608077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 124 - 193
Target Start/End: Complemental strand, 47109300 - 47109231
Alignment:
Q  124 ttaaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagag 193  Q
    |||||||||||  |||||||||||||| | |||||||||||||||  |||| ||| | ||||||||||||    
T  47109300 ttaaagtggtggaacatacattaattttagtcaataaaagaatgagtgttaaagaaagtgtttaaaagag 47109231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 181
Target Start/End: Original strand, 35606694 - 35606750
Alignment:
Q  125 taaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaa 181  Q
    |||||||||||||| ||||||||||||||  ||||| ||||| || |||||||||||    
T  35606694 taaagtggtgagacctacattaatttcatcaaataagagaataaatgttagagagaa 35606750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 196
Target Start/End: Original strand, 43515312 - 43515384
Alignment:
Q  124 ttaaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagt 196  Q
    ||||||||||| ||||||||||||||||| ||||||| | ||  || |||||||||| |||| |||| |||||    
T  43515312 ttaaagtggtgggacatacattaatttcaatcaataagaaaacaaatgttagagagagtgttgaaaatagagt 43515384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 190
Target Start/End: Complemental strand, 43958235 - 43958170
Alignment:
Q  125 taaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaa 190  Q
    |||| ||||| |||||||||| |||  ||||||||||||| |||| | ||||||||||||| ||||    
T  43958235 taaaatggtgggacatacattgattctattcaataaaagagtgaatgctagagagaatgttaaaaa 43958170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 204
Target Start/End: Original strand, 24106730 - 24106822
Alignment:
Q  112 aatgggttccaattaaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgtccttag 204  Q
    |||| |||||| |||||||  || ||||| ||||| |||||| |||||| ||| ||   |||||||||| |||| ||||||||||||| ||||    
T  24106730 aatgagttccacttaaagtcatgggacatgcattagtttcatccaataagagagtgggtgttagagagagtgttgaaaagagagtgtcattag 24106822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 160
Target Start/End: Complemental strand, 55648494 - 55648446
Alignment:
Q  112 aatgggttccaattaaagtggtgagacatacattaatttcattcaataa 160  Q
    ||||||||||| ||||| | |||  ||||||||||||||||||||||||    
T  55648494 aatgggttccacttaaaattgtggaacatacattaatttcattcaataa 55648446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 118 - 212
Target Start/End: Complemental strand, 12690343 - 12690249
Alignment:
Q  118 ttccaattaaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgtccttagtattcctc 212  Q
    ||||| ||||||||||||||||| |||||||||||| ||||||||||   |  |||||||||| ||||||||| ||||||||| ||| |||||||    
T  12690343 ttccacttaaagtggtgagacatgcattaatttcatccaataaaagagcaagtgttagagagagtgtttaaaatagagtgtccctagcattcctc 12690249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 125 - 198
Target Start/End: Original strand, 12794910 - 12794983
Alignment:
Q  125 taaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgt 198  Q
    |||||||||| || |||||||||||||| | ||||||  ||| || |||||||||| |||| ||||||||||||    
T  12794910 taaagtggtgggatatacattaatttcactaaataaataaataaatgttagagagagtgttcaaaagagagtgt 12794983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 126 - 186
Target Start/End: Complemental strand, 4595825 - 4595765
Alignment:
Q  126 aaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgttt 186  Q
    |||||||||||||||||||| |||||| ||||||||||| |||  | |||||||| |||||    
T  4595825 aaagtggtgagacatacattgatttcactcaataaaagagtgagtgctagagagagtgttt 4595765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 200
Target Start/End: Complemental strand, 25326928 - 25326840
Alignment:
Q  112 aatgggttccaattaaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgtcc 200  Q
    ||||||||||| ||||||||||| | |||||||| |||| || |||||| | |||||  |||  ||||| |||| ||||||||||||||    
T  25326928 aatgggttccacttaaagtggtgggtcatacattgattttatccaataagaaaatgagtgttgaagagagtgttgaaaagagagtgtcc 25326840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 200
Target Start/End: Complemental strand, 26159463 - 26159375
Alignment:
Q  112 aatgggttccaattaaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgtcc 200  Q
    ||||||||||| ||||||||||| | |||||||| |||| || |||||| | |||||  |||  ||||| |||| ||||||||||||||    
T  26159463 aatgggttccacttaaagtggtgggtcatacattgattttatccaataagaaaatgagtgttgaagagagtgttgaaaagagagtgtcc 26159375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 214
Target Start/End: Original strand, 19090311 - 19090400
Alignment:
Q  125 taaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgtccttagtattcctctt 214  Q
    |||||||||| |||||||||| ||||||  |||||||||| ||   | |||||||| || | ||||||||||||  |||| |||||||||    
T  19090311 taaagtggtgggacatacattgatttcacccaataaaagagtgggtgctagagagagtgctcaaaagagagtgttgttagcattcctctt 19090400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 198
Target Start/End: Original strand, 35128819 - 35128892
Alignment:
Q  125 taaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgt 198  Q
    |||||||||| |||||||||| |||| |  |||||||||| |||  | |||||||| |||| ||||||||||||    
T  35128819 taaagtggtgggacatacattgattttacccaataaaagagtgactgctagagagagtgttcaaaagagagtgt 35128892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 2675978 - 2675930
Alignment:
Q  126 aaagtggtgagacatacattaatttcattcaataaaagaatgaacgtta 174  Q
    ||||||||| |||||||||| | |||||||||||||||| |||| ||||    
T  2675978 aaagtggtgggacatacattgaattcattcaataaaagagtgaatgtta 2675930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 200
Target Start/End: Complemental strand, 39523672 - 39523584
Alignment:
Q  112 aatgggttccaattaaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgtcc 200  Q
    ||||||||||| |||||||||||||||||||  || |||||| ||||||||||||||  |||||| ||| |||| ||||||||| ||||    
T  39523672 aatgggttccacttaaagtggtgagacataccctagtttcatccaataaaagaatgagtgttagacagagtgttgaaaagagagcgtcc 39523584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 125 - 198
Target Start/End: Original strand, 17354623 - 17354696
Alignment:
Q  125 taaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgt 198  Q
    |||||||||| |||||||||| ||||||| ||||||||||||||  |||||||||| || | |||| |||||||    
T  17354623 taaagtggtgggacatacattgatttcatccaataaaagaatgagtgttagagagagtgctcaaaaaagagtgt 17354696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 162
Target Start/End: Original strand, 38065401 - 38065451
Alignment:
Q  112 aatgggttccaattaaagtggtgagacatacattaatttcattcaataaaa 162  Q
    ||||||||||| ||||||||||| || ||||||||||||||| ||||||||    
T  38065401 aatgggttccacttaaagtggtgggagatacattaatttcatccaataaaa 38065451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 126 - 191
Target Start/End: Complemental strand, 39254166 - 39254101
Alignment:
Q  126 aaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaag 191  Q
    |||||||||| |||||||||||||| ||||||||||||| |||  | || |||||||||| |||||    
T  39254166 aaagtggtgaaacatacattaattttattcaataaaagagtgagtgctatagagaatgttgaaaag 39254101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 193
Target Start/End: Original strand, 26703536 - 26703604
Alignment:
Q  125 taaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagag 193  Q
    ||||||||||||||||||||| ||||||  |||||||||| |||  | ||||||||||| | |||||||    
T  26703536 taaagtggtgagacatacattgatttcacccaataaaagagtgagtgctagagagaatgctcaaaagag 26703604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 29462085 - 29462141
Alignment:
Q  112 aatgggttccaattaaagtggtgagacatacattaatttcattcaataaaagaatga 168  Q
    |||| |||||| ||||||| ||||| |||||||| |||| |||||||||||||||||    
T  29462085 aatgtgttccacttaaagtagtgagtcatacattgattttattcaataaaagaatga 29462141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 184
Target Start/End: Original strand, 33852553 - 33852625
Alignment:
Q  112 aatgggttccaattaaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgt 184  Q
    ||||| ||||| ||||||||||| |||||||| |||||||||  ||||| |||||||  |||| |||||||||    
T  33852553 aatggattccacttaaagtggtgggacatacactaatttcatctaataagagaatgagtgttaaagagaatgt 33852625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 199
Target Start/End: Complemental strand, 2911854 - 2911771
Alignment:
Q  116 ggttccaattaaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgtc 199  Q
    ||||||| |||||||| |||| ||||||||||||  ||||||||| |||||||  |||  ||| | |||| |||||||||||||    
T  2911854 ggttccacttaaagtgatgagtcatacattaattatattcaataagagaatgagtgttgaagatagtgttgaaaagagagtgtc 2911771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 169
Target Start/End: Original strand, 10934062 - 10934105
Alignment:
Q  126 aaagtggtgagacatacattaatttcattcaataaaagaatgaa 169  Q
    |||||||||||||||| |||||||| || |||||||||||||||    
T  10934062 aaagtggtgagacatatattaattttatccaataaaagaatgaa 10934105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 199
Target Start/End: Original strand, 24539219 - 24539293
Alignment:
Q  125 taaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgtc 199  Q
    |||||||||| |||||| ||| |||| || |||||||||| |||  |||||||||| |||  |||||||||||||    
T  24539219 taaagtggtgggacatatattgattttatccaataaaagagtgagtgttagagagagtgtccaaaagagagtgtc 24539293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 164
Target Start/End: Complemental strand, 28713099 - 28713061
Alignment:
Q  126 aaagtggtgagacatacattaatttcattcaataaaaga 164  Q
    |||||||||||||||| ||| ||||||||||||||||||    
T  28713099 aaagtggtgagacatatattgatttcattcaataaaaga 28713061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 211
Target Start/End: Complemental strand, 21102685 - 21102592
Alignment:
Q  118 ttccaattaaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgtccttagtattcct 211  Q
    ||||| |||||||| ||  ||||| |||||||||||| ||||||| | || | ||||||||||| |||||||| | | | ||||||| ||||||    
T  21102685 ttccatttaaagtgatggaacatatattaatttcatttaataaaatagtgcaggttagagagaacgtttaaaatatattatccttagcattcct 21102592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 198
Target Start/End: Original strand, 32212966 - 32213038
Alignment:
Q  126 aaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgt 198  Q
    ||||| |||||||||||||| ||||||| ||||||||||  ||  | |||||||| |||| ||||| ||||||    
T  32212966 aaagtagtgagacatacattgatttcatccaataaaagatagagtgctagagagagtgttaaaaagtgagtgt 32213038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 209
Target Start/End: Complemental strand, 37489994 - 37489902
Alignment:
Q  117 gttccaattaaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgtccttagtattc 209  Q
    |||||| ||||  ||||| |||||||||| |||| |  |||||||  | |||  ||| ||||||||||| |||||||||||||||||| ||||    
T  37489994 gttccacttaatatggtgggacatacattcatttaaaccaataaacaagtgagtgtttgagagaatgttgaaaagagagtgtccttagcattc 37489902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 200
Target Start/End: Complemental strand, 18157135 - 18157047
Alignment:
Q  112 aatgggttccaattaaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgtcc 200  Q
    |||| |||||| ||||||||||| |||||||||||||||||| |||||||| | ||   |||||||||| |||| ||||||||||||||    
T  18157135 aatgtgttccacttaaagtggtgggacatacattaatttcatccaataaaaaagtgggtgttagagagagtgttgaaaagagagtgtcc 18157047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 112 - 199
Target Start/End: Original strand, 14341004 - 14341091
Alignment:
Q  112 aatgggttccaattaaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgtc 199  Q
    ||||||||||| ||||||||||| |||||| |||| |||||| |||||||| |||||  |||||||||| |||| |||||| ||||||    
T  14341004 aatgggttccacttaaagtggtgggacatatattagtttcatccaataaaaaaatgagtgttagagagagtgttgaaaagaaagtgtc 14341091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 112 - 208
Target Start/End: Complemental strand, 28274883 - 28274787
Alignment:
Q  112 aatgggttccaattaaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgtccttagtatt 208  Q
    ||||||||||| |||| ||| || |||||||| || |||||| |||||| ||| |||  |||||||||| |||| |||||||||||||| |||||||    
T  28274883 aatgggttccacttaaggtgatgggacatacactagtttcatccaataagagagtgagtgttagagagagtgttgaaaagagagtgtccctagtatt 28274787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 127 - 212
Target Start/End: Complemental strand, 11987708 - 11987623
Alignment:
Q  127 aagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgtccttagtattcctc 212  Q
    ||||||||  ||||||||||||||||| ||||||| |||| || ||| |||||| |||| ||||| ||||||  ||||||||||||    
T  11987708 aagtggtggaacatacattaatttcatccaataaatgaataaatgttggagagagtgttgaaaagtgagtgttgttagtattcctc 11987623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 125 - 198
Target Start/End: Complemental strand, 44739202 - 44739129
Alignment:
Q  125 taaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgt 198  Q
    |||||||||| ||||||||||||||||| |||| |||||| |||  | |||||||| |||| ||||||||||||    
T  44739202 taaagtggtgggacatacattaatttcactcaagaaaagagtgagtgctagagagagtgttcaaaagagagtgt 44739129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 200
Target Start/End: Original strand, 47218264 - 47218346
Alignment:
Q  118 ttccaattaaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgtcc 200  Q
    ||||| ||||||||||| |||||||| || |||||| |||||||||| |||| |||| ||| |||||| |||| || ||||||    
T  47218264 ttccacttaaagtggtgggacatacactattttcatccaataaaagagtgaatgttaaagaaaatgttaaaaatagtgtgtcc 47218346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 21970361 - 21970409
Alignment:
Q  112 aatgggttccaattaaagtggtgagacatacattaatttcattcaataa 160  Q
    ||||||||||| ||||||||||| |||||||| || |||||||||||||    
T  21970361 aatgggttccacttaaagtggtgggacatacactagtttcattcaataa 21970409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 169
Target Start/End: Original strand, 28218145 - 28218188
Alignment:
Q  126 aaagtggtgagacatacattaatttcattcaataaaagaatgaa 169  Q
    |||||||||||||||||||| ||||||| |||||||||| ||||    
T  28218145 aaagtggtgagacatacattgatttcatccaataaaagagtgaa 28218188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 212
Target Start/End: Original strand, 32848679 - 32848766
Alignment:
Q  125 taaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgtccttagtattcctc 212  Q
    |||||||||| |||||||| | ||||||  |||||||||| |||  | |||||||| |||| ||||||||||||  |||| |||||||    
T  32848679 taaagtggtgggacatacaatgatttcacccaataaaagagtgagtgctagagagagtgttcaaaagagagtgttgttagcattcctc 32848766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 213
Target Start/End: Complemental strand, 21977284 - 21977183
Alignment:
Q  112 aatgggttccaattaaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgtccttagtattcct 211  Q
    ||||||||||| ||||||| ||| ||||||||||| ||||||  ||||| | | |||   ||||||||| |||| |||||||| ||||| ||| ||| ||    
T  21977284 aatgggttccacttaaagtagtgggacatacattagtttcatcaaataagaaagtgagttttagagagagtgttgaaaagagaatgtccctagcattact 21977185  T
Q  212 ct 213  Q
    ||    
T  21977184 ct 21977183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 116 - 216
Target Start/End: Complemental strand, 1649643 - 1649543
Alignment:
Q  116 ggttccaattaaagtggtgaga-catacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgtccttagtattcctctt 214  Q
    ||||||| |||||||||| ||| |||||||||||||||| |||||| | | |||  |||||||||| |||| |||||||||||||| ||  |||||||||    
T  1649643 ggttccacttaaagtggt-agagcatacattaatttcatccaataagatagtgagtgttagagagagtgttgaaaagagagtgtccctaacattcctctt 1649545  T
Q  215 tg 216  Q
    ||    
T  1649544 tg 1649543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 127 - 199
Target Start/End: Complemental strand, 36494306 - 36494233
Alignment:
Q  127 aagtggtgagacatacattaatttcattcaat-aaaagaatgaacgttagagagaatgtttaaaagagagtgtc 199  Q
    |||||||||||| |||||||||||||| |||| |||||| | |  |||||||||||||||||||||||| ||||    
T  36494306 aagtggtgagacgtacattaatttcatccaattaaaagagtaagtgttagagagaatgtttaaaagagaatgtc 36494233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 212
Target Start/End: Complemental strand, 32309577 - 32309477
Alignment:
Q  112 aatgggttccaattaaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgtccttagtattcct 211  Q
    |||||||| || || |||||||  ||||||||||||||| || |||||| ||| |||  | ||||||||||||| |||||||||||||  ||| ||||||    
T  32309577 aatgggtttcacttgaagtggtcggacatacattaattttatccaataagagagtgagtgctagagagaatgttgaaaagagagtgtctctagcattcct 32309478  T
Q  212 c 212  Q
    |    
T  32309477 c 32309477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 125 - 212
Target Start/End: Original strand, 40971549 - 40971636
Alignment:
Q  125 taaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgtccttagtattcctc 212  Q
    |||||||||| |||||||||| |||||| ||||||||||| |||  | |||||||| || | ||||||||||||  |||| |||||||    
T  40971549 taaagtggtgggacatacattgatttcactcaataaaagagtgagtgctagagagagtgctcaaaagagagtgttgttagcattcctc 40971636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 164
Target Start/End: Complemental strand, 43405476 - 43405438
Alignment:
Q  126 aaagtggtgagacatacattaatttcattcaataaaaga 164  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  43405476 aaagtggtgagacatacattgatttcattcaataaaaga 43405438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 185
Target Start/End: Complemental strand, 32050391 - 32050331
Alignment:
Q  125 taaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtt 185  Q
    ||||||| ||||||||| ||||||||||  ||||||||||||||| | |||||||| ||||    
T  32050391 taaagtgatgagacatatattaatttcacccaataaaagaatgaatgctagagagagtgtt 32050331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 159
Target Start/End: Original strand, 33854050 - 33854097
Alignment:
Q  112 aatgggttccaattaaagtggtgagacatacattaatttcattcaata 159  Q
    ||||||||||| ||||||| ||  ||||||||||||||||||||||||    
T  33854050 aatgggttccacttaaagtagttggacatacattaatttcattcaata 33854097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 178
Target Start/End: Original strand, 6529957 - 6530023
Alignment:
Q  112 aatgggttccaattaaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagaga 178  Q
    ||||||||||| | ||| ||||| ||||||||||| |||||| |||||| |||||| | ||||||||    
T  6529957 aatgggttccactaaaaatggtgggacatacattagtttcatccaataagagaatggatgttagaga 6530023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 179
Target Start/End: Original strand, 10253178 - 10253232
Alignment:
Q  125 taaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagag 179  Q
    |||||||||| |||||||||||||||||| ||||| |||| |||  |||||||||    
T  10253178 taaagtggtgggacatacattaatttcatccaatagaagagtgagtgttagagag 10253232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 198
Target Start/End: Complemental strand, 26072187 - 26072114
Alignment:
Q  125 taaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgt 198  Q
    ||||||||||||||||||||| ||||||  ||| ||||||||||   ||||| ||| || | ||||||||||||    
T  26072187 taaagtggtgagacatacattgatttcacccaaaaaaagaatgagtattagaaagagtgctcaaaagagagtgt 26072114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 162
Target Start/End: Original strand, 27592548 - 27592585
Alignment:
Q  125 taaagtggtgagacatacattaatttcattcaataaaa 162  Q
    ||||||||||||||||||||| ||||||| ||||||||    
T  27592548 taaagtggtgagacatacattgatttcatccaataaaa 27592585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 162
Target Start/End: Original strand, 30325970 - 30326007
Alignment:
Q  125 taaagtggtgagacatacattaatttcattcaataaaa 162  Q
    ||||||||||||||||||||| ||||||| ||||||||    
T  30325970 taaagtggtgagacatacattgatttcatccaataaaa 30326007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 125 - 198
Target Start/End: Complemental strand, 1110282 - 1110209
Alignment:
Q  125 taaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgt 198  Q
    |||||||||| |||||||||| |||||| ||||||||||| |||  ||||||||||||| |  |||||||||||    
T  1110282 taaagtggtgggacatacattgatttcactcaataaaagagtgagtgttagagagaatgctcgaaagagagtgt 1110209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 137 - 201
Target Start/End: Original strand, 9682759 - 9682823
Alignment:
Q  137 acatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgtcct 201  Q
    ||||||||||||||| ||||||||||||| ||| |||||||||| | || |||||| ||||||||    
T  9682759 acatacattaatttctttcaataaaagaacgaatgttagagagattattgaaaagaaagtgtcct 9682823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 112 - 198
Target Start/End: Complemental strand, 31494303 - 31494219
Alignment:
Q  112 aatgggttccaattaaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgt 198  Q
    ||||||||||| ||||||| ||| ||||||||||| |||||| |||||| ||| |||  |||||||||  |||| ||||||||||||    
T  31494303 aatgggttccacttaaagtagtgggacatacattattttcatccaataagagagtgagtgttagagag--tgttgaaaagagagtgt 31494219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 199
Target Start/End: Complemental strand, 19190729 - 19190640
Alignment:
Q  112 aatgggttccaattaaagtggtgagacatacat--taatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgtc 199  Q
    ||||| ||||| |||||||||||  ||||||||  ||||||||| |||||| | |||||  |||||||||| || |||||||||||||||    
T  19190729 aatggattccacttaaagtggtggaacatacatattaatttcatccaataagaaaatgagtgttagagagagtgcttaaaagagagtgtc 19190640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 111 - 196
Target Start/End: Complemental strand, 43400231 - 43400146
Alignment:
Q  111 taatgggttccaattaaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagt 196  Q
    |||| ||||||| ||||||||||| |||||||| || |||||| |||||| | | |||  |||||||||| |||| ||||||||||    
T  43400231 taataggttccacttaaagtggtgggacatacactagtttcatccaataagaaagtgagtgttagagagagtgttgaaaagagagt 43400146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 15508993 - 15508925
Alignment:
Q  130 tggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgt 198  Q
    ||||| |||||||||| |||||| ||||||||||| |||  |||||| ||| |||| ||||||||||||    
T  15508993 tggtgggacatacattgatttcactcaataaaagagtgagtgttagaaagagtgttcaaaagagagtgt 15508925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 19953492 - 19953436
Alignment:
Q  112 aatgggttccaattaaagtggtgagacatacattaatttcattcaataaaagaatga 168  Q
    ||||||||||| ||||||||||| | ||||||||  |||||| ||||||||||||||    
T  19953492 aatgggttccacttaaagtggtgggtcatacattggtttcatccaataaaagaatga 19953436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 200
Target Start/End: Complemental strand, 37078057 - 37077969
Alignment:
Q  112 aatgggttccaattaaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgtcc 200  Q
    ||||| ||||| ||||||||||| |||||||| ||||| ||| |||||| ||| ||   |||||||| | |||| ||||||||||||||    
T  37078057 aatggattccacttaaagtggtgggacatacactaattacatccaataagagagtgtgtgttagagaaagtgttgaaaagagagtgtcc 37077969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 179
Target Start/End: Complemental strand, 30706366 - 30706299
Alignment:
Q  112 aatgggttccaattaaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagag 179  Q
    |||| |||||| ||||| ||||||||||||||||||||||||  ||||| ||| |||  |||||||||    
T  30706366 aatgagttccatttaaactggtgagacatacattaatttcatcaaataagagagtgagtgttagagag 30706299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 168
Target Start/End: Complemental strand, 29795888 - 29795846
Alignment:
Q  126 aaagtggtgagacatacattaatttcattcaataaaagaatga 168  Q
    |||||||||| ||||||||| ||||||||| ||||||||||||    
T  29795888 aaagtggtgatacatacattgatttcattcgataaaagaatga 29795846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 198
Target Start/End: Original strand, 11729715 - 11729772
Alignment:
Q  141 acattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgt 198  Q
    ||||| |||||||||||||||||||| || |||||| ||| |||| ||||| ||||||    
T  11729715 acattgatttcattcaataaaagaataaatgttagaaagagtgttgaaaagtgagtgt 11729772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 191
Target Start/End: Original strand, 34142236 - 34142301
Alignment:
Q  126 aaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaag 191  Q
    ||||| ||||||||||||| |||||||| |||||||| | |||| ||| |||||| |||| |||||    
T  34142236 aaagtagtgagacatacatgaatttcatccaataaaaaagtgaatgtttgagagattgttgaaaag 34142301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 198
Target Start/End: Complemental strand, 42182973 - 42182900
Alignment:
Q  125 taaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgt 198  Q
    |||||||||| |||||||||| ||||||  |||||||||| |||  | |||||||| || | ||||||||||||    
T  42182973 taaagtggtgggacatacattgatttcacccaataaaagagtgagtgctagagagagtgctcaaaagagagtgt 42182900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 3772264 - 3772307
Alignment:
Q  125 taaagtggtgagacatacattaatttcattcaataaaagaatgaa 169  Q
    ||||||||||| |||||||||||||||| || |||||||||||||    
T  3772264 taaagtggtgaaacatacattaatttca-tccataaaagaatgaa 3772307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 195
Target Start/End: Original strand, 13341745 - 13341793
Alignment:
Q  147 atttcattcaataaaagaatgaacgttagagagaatgtttaaaagagag 195  Q
    ||||||||||||||||||||||| |||| |  |||| ||||||||||||    
T  13341745 atttcattcaataaaagaatgaatgttaaaaggaatatttaaaagagag 13341793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 198
Target Start/End: Original strand, 26767858 - 26767930
Alignment:
Q  126 aaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgt 198  Q
    ||||||||| |||||||||| ||||||| || ||||||| | |  | ||||||||||||| ||||| ||||||    
T  26767858 aaagtggtgggacatacattgatttcatccagtaaaagagtaagtgctagagagaatgttgaaaagtgagtgt 26767930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 198
Target Start/End: Original strand, 36471935 - 36472007
Alignment:
Q  126 aaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgt 198  Q
    ||||||||||||||||| || ||||||| |||||| ||| |||  || ||||||| |||| ||||| ||||||    
T  36471935 aaagtggtgagacatactttgatttcatccaataagagattgagtgtcagagagagtgttgaaaagtgagtgt 36472007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 200
Target Start/End: Complemental strand, 296933 - 296845
Alignment:
Q  112 aatgggttccaattaaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagagaatgtttaaaagagagtgtcc 200  Q
    ||||||||||| |||| |||||| |||||||| || |||||| |||||| ||| |||  |||||||||| |||| |||||| |||||||    
T  296933 aatgggttccacttaaggtggtgggacatacactagtttcatccaataagagagtgagtgttagagagagtgttgaaaagaaagtgtcc 296845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0886 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 3330 - 3274
Alignment:
Q  124 ttaaagtggtgagacatacattaatttcattcaataaaagaatgaacgttagagaga 180  Q
    ||||||||| ||| ||||||||  |||||| |||| |||||||||||||| ||||||    
T  3330 ttaaagtggagagtcatacattggtttcatccaattaaagaatgaacgttggagaga 3274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University