View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14110_low_6 (Length: 440)

Name: NF14110_low_6
Description: NF14110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14110_low_6
NF14110_low_6
[»] chr3 (13 HSPs)
chr3 (8-426)||(3592826-3593249)
chr3 (48-185)||(15777298-15777433)
chr3 (8-239)||(3290578-3290806)
chr3 (16-259)||(18705449-18705690)
chr3 (48-261)||(30993193-30993407)
chr3 (151-268)||(24177922-24178038)
chr3 (8-135)||(9733542-9733668)
chr3 (59-229)||(3262219-3262387)
chr3 (148-263)||(32657256-32657373)
chr3 (108-211)||(18534437-18534539)
chr3 (59-135)||(6460042-6460118)
chr3 (141-206)||(3483606-3483670)
chr3 (226-259)||(32658589-32658622)
[»] chr4 (7 HSPs)
chr4 (8-181)||(23974125-23974298)
chr4 (8-235)||(19611839-19612062)
chr4 (8-207)||(15706659-15706858)
chr4 (8-259)||(25126153-25126403)
chr4 (25-185)||(11153812-11153969)
chr4 (73-259)||(18552294-18552479)
chr4 (17-172)||(14645763-14645918)
[»] chr1 (5 HSPs)
chr1 (8-260)||(18513737-18513992)
chr1 (14-185)||(12786235-12786407)
chr1 (8-196)||(9131599-9131786)
chr1 (54-189)||(23632127-23632263)
chr1 (120-163)||(21494387-21494430)
[»] chr6 (6 HSPs)
chr6 (49-243)||(9548696-9548889)
chr6 (27-185)||(19768967-19769125)
chr6 (8-158)||(19892895-19893045)
chr6 (49-252)||(15285902-15286110)
chr6 (107-239)||(19566895-19567028)
chr6 (89-137)||(12987076-12987124)
[»] scaffold0088 (1 HSPs)
scaffold0088 (54-263)||(35452-35665)
[»] chr2 (7 HSPs)
chr2 (13-194)||(16093515-16093694)
chr2 (8-211)||(20263622-20263819)
chr2 (14-155)||(27386861-27387002)
chr2 (14-160)||(32623525-32623671)
chr2 (221-264)||(16093423-16093466)
chr2 (160-259)||(20180863-20180961)
chr2 (108-193)||(15266931-15267015)
[»] scaffold0281 (1 HSPs)
scaffold0281 (74-189)||(1840-1955)
[»] chr8 (7 HSPs)
chr8 (58-189)||(17290619-17290751)
chr8 (23-218)||(40391342-40391535)
chr8 (172-269)||(42147375-42147472)
chr8 (8-105)||(9883702-9883798)
chr8 (124-185)||(9883634-9883694)
chr8 (8-96)||(42147521-42147607)
chr8 (121-189)||(45453823-45453891)
[»] chr7 (11 HSPs)
chr7 (25-185)||(18147539-18147699)
chr7 (108-263)||(3312560-3312715)
chr7 (67-204)||(32945329-32945463)
chr7 (108-189)||(3310935-3311014)
chr7 (118-206)||(13696040-13696128)
chr7 (118-194)||(13695844-13695920)
chr7 (8-185)||(11508628-11508804)
chr7 (198-264)||(21859820-21859885)
chr7 (151-264)||(16250380-16250488)
chr7 (49-82)||(22949172-22949205)
chr7 (49-158)||(33721258-33721370)
[»] scaffold0094 (1 HSPs)
scaffold0094 (118-242)||(48198-48321)
[»] scaffold0019 (1 HSPs)
scaffold0019 (55-158)||(182969-183073)
[»] scaffold0005 (1 HSPs)
scaffold0005 (17-172)||(171372-171527)
[»] chr5 (4 HSPs)
chr5 (8-86)||(39176517-39176594)
chr5 (58-179)||(39435924-39436045)
chr5 (107-185)||(39176440-39176520)
chr5 (18-78)||(21143860-21143919)
[»] scaffold0323 (1 HSPs)
scaffold0323 (8-206)||(16224-16422)
[»] scaffold0815 (1 HSPs)
scaffold0815 (167-253)||(1279-1364)
[»] scaffold0978 (1 HSPs)
scaffold0978 (48-89)||(2912-2953)


Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 8 - 426
Target Start/End: Complemental strand, 3593249 - 3592826
Alignment:
Q  8 gagatgaagggttaccgagaaagagacaaacaaagcgacaaaaagaaaaactagggttgtggagagaagaggcaaggaggaatagcgagaataacctatg 107  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3593249 gagaagaagggttaccgagaaagagacaaacaaagcgacaaaaagaaaaactaaggttgtggagagaagaggcaaggaggaatagcgagaataacctatg 3593150  T
Q  108 gagagatttcaccgtaggaaatcatcaattcggcaaactagaggtaaggggagagtctctattcatcataagggttgtatgatcatacgtgtagtgaaga 207  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||     
T  3593149 gagagatttctccgtaggaaatcatcaattcggcaaactagaggtaaggggagagtctctattcatcataagggttgtatgatcatacgtgtagtgcagg 3593050  T
Q  208 gtttatgttttacattgtttttcatgatcttttaatgaattcatgttaaatttgtgt-cctttcttatgctgcaattatatattttcgaaaacc----ta 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||    ||    
T  3593049 gtttatgttttacattgtttttcatgatcttttaatgaattcatgttaaatttgtgtccctttctgttgctgcaattatatattttcgaaaaccttttta 3592950  T
Q  303 tgcactttcgaattcagtctaaatttgcttttacatttaagttgctttgctgcctattttgcttttaaacccatttttatattatattcctttaaaattt 402  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3592949 tgcactttcgaattcagtcaaaatttgcttttacagttaagttgctttgctgcctattttgcttttaaacccatttttatattatattcctttaaaattt 3592850  T
Q  403 acatggccaccgtaattcatattg 426  Q
    ||||||||||||||||||||||||    
T  3592849 acatggccaccgtaattcatattg 3592826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 48 - 185
Target Start/End: Original strand, 15777298 - 15777433
Alignment:
Q  48 aaaagaaaaactagggttgtggagagaagaggcaaggaggaatagcgagaataacctatggagagatttcaccgtaggaaatcatcaattcggcaaacta 147  Q
    |||||||||||||||||| ||||||||| |||||| ||||||||||||||| ||||||  |||||||||||||||||||| | |||| ||  ||||||||    
T  15777298 aaaagaaaaactagggttatggagagaataggcaaagaggaatagcgagaagaacctagagagagatttcaccgtaggaatttatcacttttgcaaacta 15777397  T
Q  148 gaggtaaggggagagtctctattcatcataagggttgt 185  Q
    ||||||||||| |||| | |||||||||||||||||||    
T  15777398 gaggtaagggg-gagt-tttattcatcataagggttgt 15777433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 8 - 239
Target Start/End: Complemental strand, 3290806 - 3290578
Alignment:
Q  8 gagatgaagggttaccgagaaagagacaaacaaagcgacaaaaagaaaaactagggttgtggagagaagaggcaaggaggaatagcgagaataacctatg 107  Q
    |||| ||| ||||| ||||||||||||||| |||||| ||||| ||||||||||| || |||||||  ||||||| ||||||||||||||| ||||||      
T  3290806 gagaagaaaggttatcgagaaagagacaaataaagcggcaaaa-gaaaaactaggattatggagag--gaggcaaagaggaatagcgagaagaacctaga 3290710  T
Q  108 gagagatttcaccgtaggaaatcatcaa-ttcggcaaactagaggtaaggggagagtctctat---tcatcataagggttgtatgatcatacgtgtagtg 203  Q
    ||| ||||| |||||||||||||||||| ||||  |||||||| |||||||| |||||| |||   |||||||| ||| ||||||| |||| |  |||||    
T  3290709 gagggatttaaccgtaggaaatcatcaatttcgcaaaactaga-gtaagggg-gagtct-tattcatcatcataggggctgtatgaacatatggatagtg 3290613  T
Q  204 aagagtttatgttttacattgtttttcatgatcttt 239  Q
    ||| |||| |||||| |||| |||||||||||||||    
T  3290612 aagggttt-tgttttccattatttttcatgatcttt 3290578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 16 - 259
Target Start/End: Original strand, 18705449 - 18705690
Alignment:
Q  16 gggttaccgagaaagagacaaacaaagcgacaaaaagaaaaactagggttgtggagagaagaggcaaggaggaatagcgagaataacctatggagagatt 115  Q
    |||||||| | ||||||| |||||| ||| ||||| ||||||| | |||||||||||||||||| ||||||  |||| ||||| ||| ||  ||||||||    
T  18705449 gggttaccaataaagagagaaacaaggcggcaaaa-gaaaaaccatggttgtggagagaagaggtaaggagacatagtgagaagaacgtagagagagatt 18705547  T
Q  116 tcaccgtaggaaatcatcaa-ttcggcaaactagaggtaaggggagagtctctattcatcataagggttgtatgatcatacgtgtagtgaagagtttatg 214  Q
    ||||| || ||||||||||| ||||  |||||||||||| |||| ||||||||||| | ||||| |||||||||| |||| | ||||||||| |||| ||    
T  18705548 tcaccatatgaaatcatcaatttcgtaaaactagaggtatgggg-gagtctctatttaccataa-ggttgtatgaacataagggtagtgaagggtttgtg 18705645  T
Q  215 ttttacattgt-ttttcatgatcttttaatgaattcatgttaaatt 259  Q
     ||||  || | ||||||||||||||| || |||| ||||||||||    
T  18705646 -tttattttctgttttcatgatcttttgataaattgatgttaaatt 18705690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 48 - 261
Target Start/End: Original strand, 30993193 - 30993407
Alignment:
Q  48 aaaagaaaaactagggttgtggagagaagaggcaaggaggaatagcgagaataacctatggagagatttcaccgtaggaaatcatcaa-ttcggcaaact 146  Q
    ||||| |||||||||||||||||||||| |  ||||  |  ||||  |||| |||||   |||||| ||||| ||| ||| ||||||| |||  ||||||    
T  30993193 aaaaggaaaactagggttgtggagagaaaaaacaagatgacatagaaagaagaacctggagagagacttcactgtatgaattcatcaaattctccaaact 30993292  T
Q  147 agaggtaaggggagagtctctattcatcataagggttgtatgatcatacgtgtagtgaagagtttatgttttacattgtttttcatgatcttttaatgaa 246  Q
    |||||||||||| ||||||||||||| |||||||||||||||| |||| | |||| |||||  || |||||| |||||  || |||||||||||| ||||    
T  30993293 agaggtaaggggggagtctctattcaccataagggttgtatgaacatatgggtagggaagaacttttgttttccattgaattgcatgatcttttagtgaa 30993392  T
Q  247 ttcatgttaaatttg 261  Q
    || | ||||||||||    
T  30993393 tttaggttaaatttg 30993407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 151 - 268
Target Start/End: Original strand, 24177922 - 24178038
Alignment:
Q  151 gtaaggggagagtctctattcatcataagggttgtatgatcatacgtgtagtgaagagtttatgttttacattgtttttcatgatcttttaatgaattca 250  Q
    |||||||| ||||||||||||| ||||||| || ||||| |||| | ||||||||| |||| | |||| |||||||||||||||||||||||||||||||    
T  24177922 gtaagggg-gagtctctattcaccataaggattctatgaacatatgggtagtgaagggtttttattttccattgtttttcatgatcttttaatgaattca 24178020  T
Q  251 tgttaaatttgtgtcctt 268  Q
    ||||| ||| ||||||||    
T  24178021 tgttatattcgtgtcctt 24178038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 8 - 135
Target Start/End: Original strand, 9733542 - 9733668
Alignment:
Q  8 gagatgaagggttaccgagaaagagacaaacaaagcgacaaaaagaaaaactagggttgtggagagaagaggcaaggaggaatagcgagaataacctatg 107  Q
    |||| ||||||||||  ||||||||| |||||||||| ||||| ||||||||||||||||||||| ||||| |||||||| | | |||||| || |||      
T  9733542 gagaagaagggttacttagaaagagagaaacaaagcggcaaaa-gaaaaactagggttgtggagaaaagagtcaaggaggcacaccgagaagaatctaga 9733640  T
Q  108 gagagatttcaccgtaggaaatcatcaa 135  Q
    |||||||||||| ||||||| |||||||    
T  9733641 gagagatttcacagtaggaattcatcaa 9733668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 59 - 229
Target Start/End: Original strand, 3262219 - 3262387
Alignment:
Q  59 tagggttgtggagagaagaggcaaggaggaatagcgagaataacctatggagagatttcaccgtaggaaatcatca-attcggcaaactagaggtaaggg 157  Q
    |||||||||||||||||||| |||| | | |||||||| | ||  ||  ||||||||||| ||||||||||||| | ||||   |||||| |||||| ||    
T  3262219 tagggttgtggagagaagagacaagaaagcatagcgaggagaatgtagagagagatttcatcgtaggaaatcattagattctataaacta-aggtaa-gg 3262316  T
Q  158 gagagtctctattcatcataagggttgtatgatcatacgtgtagtgaagagtttatgttttacattgttttt 229  Q
    ||| ||||||||||| ||||||| |||||||| |||| | ||||||||| |||| |||||| |||| |||||    
T  3262317 gagcgtctctattcaccataaggattgtatgaacatatgggtagtgaagggttt-tgtttttcattattttt 3262387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 148 - 263
Target Start/End: Original strand, 32657256 - 32657373
Alignment:
Q  148 gaggtaaggggagagtctctattcatcataagggttgtatgatcatacgtgtagtgaagagtttatgttt----tacattgtttttcatgatcttttaat 243  Q
    ||||||||||  ||||||||||||| |||||||||||||||| |||| | ||||| |||| | | |||||    | | ||||||| ||||||||||||||    
T  32657256 gaggtaagggaggagtctctattca-cataagggttgtatgaacatatgggtagtaaagaatctgtgtttcttcttctttgtttt-catgatcttttaat 32657353  T
Q  244 gaattcatgttaaatttgtg 263  Q
    ||||||||||||||||||||    
T  32657354 gaattcatgttaaatttgtg 32657373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 108 - 211
Target Start/End: Original strand, 18534437 - 18534539
Alignment:
Q  108 gagagatttcaccgtaggaaatcatcaattcggcaaa-ctagaggtaaggggagagtctctattcatcataagggttgtatgatcatacgtgtagtgaag 206  Q
    ||||||||  ||| ||||||||||||||||  ||||| |||||||||||||| ||||||||||||| ||||||| |||||||| |||| | |||||||||    
T  18534437 gagagattcaaccataggaaatcatcaatttcgcaaaactagaggtaagggg-gagtctctattcaccataaggattgtatgaacatatg-gtagtgaag 18534534  T
Q  207 agttt 211  Q
     ||||    
T  18534535 ggttt 18534539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 135
Target Start/End: Complemental strand, 6460118 - 6460042
Alignment:
Q  59 tagggttgtggagagaagaggcaaggaggaatagcgagaataacctatggagagatttcaccgtaggaaatcatcaa 135  Q
    ||||||||||||||||||||||||||||| ||| ||||||  | |||  ||||||||||| |||||||  |||||||    
T  6460118 tagggttgtggagagaagaggcaaggaggcataacgagaaggatctagagagagatttcatcgtaggatttcatcaa 6460042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 206
Target Start/End: Complemental strand, 3483670 - 3483606
Alignment:
Q  141 caaactagaggtaaggggagagtctctattcatcataagggttgtatgatcatacgtgtagtgaag 206  Q
    |||||||||||||||||  |||||||| || | |||||||||||||||||| || | |||||||||    
T  3483670 caaactagaggtaagggaggagtctctgttta-cataagggttgtatgatcgtatgggtagtgaag 3483606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 259
Target Start/End: Complemental strand, 32658622 - 32658589
Alignment:
Q  226 ttttcatgatcttttaatgaattcatgttaaatt 259  Q
    |||||||||||||||||||||||||| |||||||    
T  32658622 ttttcatgatcttttaatgaattcattttaaatt 32658589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 1e-48; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 8 - 181
Target Start/End: Complemental strand, 23974298 - 23974125
Alignment:
Q  8 gagatgaagggttaccgagaaagagacaaacaaagcgacaaaaagaaaaactagggttgtggagagaagaggcaaggaggaatagcgagaataacctatg 107  Q
    |||| ||||||||||||||||||||| ||||||||||  |||| |||||||||||||| |||||||||||| ||| ||||||||||||||| ||||||      
T  23974298 gagaagaagggttaccgagaaagagagaaacaaagcgggaaaa-gaaaaactagggttatggagagaagagacaaagaggaatagcgagaagaacctaga 23974200  T
Q  108 gagagatttcaccgtaggaaatcatcaattcggcaaactagaggtaa-ggggagagtctctattcatcataaggg 181  Q
    || |||||||||||||||||||||||||||| ||||||||||||||| |||| |||| | |||||||||||||||    
T  23974199 gaaagatttcaccgtaggaaatcatcaattctgcaaactagaggtaatggggggagtttttattcatcataaggg 23974125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 8 - 235
Target Start/End: Original strand, 19611839 - 19612062
Alignment:
Q  8 gagatgaagggttaccgagaaagagacaaacaaagcgacaaaaagaaaaactagggttgtggagagaagaggcaaggaggaatagcgagaataacctatg 107  Q
    |||| ||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||| ||||||||||||||||| |||||||||| ||||||      
T  19611839 gagaagaagggttaccgagaaagagagaaacaaagcggcaaaa-gaaaaactagggttgtggggagaagaggcaaggagggatagcgagaagaacctaga 19611937  T
Q  108 gagagatttcaccgtaggaaatcatcaa-ttcggcaaactagaggtaaggggagagtctctattcatcataagggttgtatgatcatacgtgtagtgaag 206  Q
    ||||||||||| |||||| ||||||||| ||||  ||| |||||||| |||| ||||||||||||| ||||| ||||| |||| ||||   |||||||||    
T  19611938 gagagatttcatcgtagggaatcatcaatttcgcaaaattagaggtatggggggagtctctattca-cataa-ggttgcatgaacatataggtagtgaag 19612035  T
Q  207 agtttatgttttacattgtttttcatgat 235  Q
     |||| |||||| ||||||||||||||||    
T  19612036 -gttt-tgttttccattgtttttcatgat 19612062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 8 - 207
Target Start/End: Complemental strand, 15706858 - 15706659
Alignment:
Q  8 gagatgaagggttaccgagaaagagacaaacaaagcgacaaaaagaaaaactagggttgtggagagaagaggcaaggaggaatagcgagaataacctatg 107  Q
    |||| ||||||||||||||||||||| |||||||||| ||||| |||||| ||||||| ||||||||| || ||| ||||||||||||||| || |||      
T  15706858 gagaagaagggttaccgagaaagagagaaacaaagcggcaaaa-gaaaaattagggttatggagagaatagacaaagaggaatagcgagaagaatctaaa 15706760  T
Q  108 gagagatttcaccgtaggaaatcatcaa-ttcggcaaactagaggtaaggggagagtctctattcatcataagggttgtatgatcatacgtgtagtgaag 206  Q
    | ||||||||| |||| ||||||||||| ||||  ||||||||||||| ||| ||||||||||||| | |||| |||||||||||| | | |||||||||    
T  15706759 gggagatttcaacgtaagaaatcatcaatttcgcaaaactagaggtaatgggggagtctctattcaccgtaagagttgtatgatcacatgagtagtgaag 15706660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 8 - 259
Target Start/End: Original strand, 25126153 - 25126403
Alignment:
Q  8 gagatgaagggttaccgagaaagagacaaacaaagcgacaaaaagaaaaactagggttgtggagagaagaggcaaggaggaatagcgagaataacctatg 107  Q
    |||| ||||||||||||||||| ||| ||| || ||| ||||| |||||||||||||| ||| |||||||||||| ||||||||||||||| ||||||      
T  25126153 gagaagaagggttaccgagaaatagagaaataaggcggcaaaa-gaaaaactagggttatggtgagaagaggcaaagaggaatagcgagaagaacctaga 25126251  T
Q  108 gagagatttcaccgtaggaaatcatcaa-ttcggcaaactagaggtaaggggagagtctctattcatcataagggttgtatgatcatacgtgtagtgaag 206  Q
    |||| |||| | |||||||||||||||| ||||  |||||||||||| |||| ||||||||||   ||||||||||||||| | ||||   |||||||||    
T  25126252 gagaaatttgaacgtaggaaatcatcaatttcgcaaaactagaggtatggggggagtctctat---tcataagggttgtataaacatataggtagtgaag 25126348  T
Q  207 agtttatgttttac--attgtttttcatgatcttttaatgaattcatgttaaatt 259  Q
      |||||||||| |   ||  ||||| |||||||||||| |||||||||| ||||    
T  25126349 gatttatgtttttcttctttgttttcttgatcttttaataaattcatgttcaatt 25126403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 25 - 185
Target Start/End: Complemental strand, 11153969 - 11153812
Alignment:
Q  25 agaaagagacaaacaaagcgacaaaaagaaaaactagggttgtggagagaagaggcaaggaggaatagcgagaataacctatggagagatttcaccgtag 124  Q
    ||||||||| |||||||||| ||||| ||||||||||||||||||||| ||||| |||| ||| | | |||||| || |||  ||||||||||||||||     
T  11153969 agaaagagagaaacaaagcggcaaaa-gaaaaactagggttgtggagaaaagagtcaag-aggcacaccgagaagaatcta--gagagatttcaccgtat 11153874  T
Q  125 gaaatcatcaa-ttcggcaaactagaggtaaggggagagtctctattcatcataagggttgt 185  Q
    ||| ||||||| |||  | |||||||||||| ||| ||||||||||||||||||||||||||    
T  11153873 gaattcatcaaattcttcgaactagaggtaatgggggagtctctattcatcataagggttgt 11153812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 73 - 259
Target Start/End: Original strand, 18552294 - 18552479
Alignment:
Q  73 gaagaggcaaggaggaatagcgagaataacctatggagagatttcaccgtaggaaatcatcaa-ttcggcaaactagaggtaaggggagagtctctattc 171  Q
    ||||||||||||||| |||| ||||| |||||   |||| |||||| | ||| || ||||||| ||  | |||||||| |||| ||| |||||||| |||    
T  18552294 gaagaggcaaggaggcatagtgagaagaacctggagagatatttcatcatagtaattcatcaaatttagtaaactagaagtaatggg-gagtctcttttc 18552392  T
Q  172 atcataagggttgtatgatcatacgtgtagtgaagagtttatgttttacattgtttttcatgatcttttaatgaattcatgttaaatt 259  Q
    | |||||||||||||||| |||||| |||||||||||| | ||||||| |||||||| |||| |||||||| ||||||||||| ||||    
T  18552393 agcataagggttgtatgagcatacgggtagtgaagagtgt-tgttttatattgttttgcatgttcttttaacgaattcatgtttaatt 18552479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 172
Target Start/End: Complemental strand, 14645918 - 14645763
Alignment:
Q  17 ggttaccgagaaagagacaaacaaagcgacaaaaagaaaaactagggttgtggagagaagaggc-aaggaggaatagcgagaataacctatggagagatt 115  Q
    ||||||| ||||||||| |||||||||  |||||||||||||||||||||| |||||||||||| || |||  | || || || | | ||  ||||||||    
T  14645918 ggttaccaagaaagagagaaacaaagctgcaaaaagaaaaactagggttgtagagagaagaggcaaaagagacaaagagataagagcttaaagagagatt 14645819  T
Q  116 tcaccgtaggaaatcatcaattcggcaaactagaggtaaggggagagtctctattca 172  Q
      || || |||| |||||||||||| ||||||||||||||||| |||||||||||||    
T  14645818 caactgtgggaagtcatcaattcggaaaactagaggtaagggg-gagtctctattca 14645763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 1e-48; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 8 - 260
Target Start/End: Original strand, 18513737 - 18513992
Alignment:
Q  8 gagatgaagggttaccgagaaagagacaaacaaagcgacaaaaagaaaaactagggttgtggagagaagaggcaaggaggaatagcgagaataacctatg 107  Q
    |||| |||| |||||||||||||||| ||||||| |||||||| |||||||||||||| |||||||||||||| | ||||||||| ||||| ||||||      
T  18513737 gagaagaagcgttaccgagaaagagagaaacaaaacgacaaaa-gaaaaactagggttatggagagaagaggccaagaggaatagtgagaagaacctaga 18513835  T
Q  108 gagagatttcaccgtaggaaatcatcaa-ttcggcaaactagaggtaaggggagagtctctattcatcataagggttgtatgatcatacgtgtagtgaag 206  Q
    ||||||||| | | |||||||||||||| ||||  |||||| ||||||||||  |||||||||||| |||||||||||||||| ||||   ||||||||     
T  18513836 gagagattttaacataggaaatcatcaatttcgcaaaactaaaggtaagggggaagtctctattcaccataagggttgtatgaacatataggtagtgaaa 18513935  T
Q  207 agtttatg---ttttacattgtttttcatgatcttttaatgaattcatgttaaattt 260  Q
     |||||||   || | | ||  |||||||||||||||||| ||||||||||||||||    
T  18513936 ggtttatgattttcttcttttgttttcatgatcttttaataaattcatgttaaattt 18513992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 14 - 185
Target Start/End: Complemental strand, 12786407 - 12786235
Alignment:
Q  14 aagggttaccgagaaagagacaaacaaagcgacaaaaagaaaaactagggttgtggagagaagaggcaaggaggaatagcgagaataacctatggagaga 113  Q
    |||||||||||||||| ||| |||||||||| ||||| ||||| |||||||||||||||||| |||||||| || ||||  |||| |||||   ||||||    
T  12786407 aagggttaccgagaaacagagaaacaaagcggcaaaaggaaaa-ctagggttgtggagagaaaaggcaaggtggcatagaaagaagaacctgaagagaga 12786309  T
Q  114 tttcaccgtaggaaatcatc-aattcggcaaactagaggtaa-ggggagagtctctattcatcataagggttgt 185  Q
    |||||||||||||| ||||| |||||  |||||||||||||| |||| ||||||||||||||||||||||||||    
T  12786308 tttcaccgtaggaattcatcaaattctccaaactagaggtaatggggggagtctctattcatcataagggttgt 12786235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 8 - 196
Target Start/End: Original strand, 9131599 - 9131786
Alignment:
Q  8 gagatgaagggttaccgagaaagagacaaacaaagcgacaaaaagaaaaactagggttgtggagagaagaggcaaggaggaatagcgagaataacctatg 107  Q
    |||| ||||||||||||||||||||| | |||||||  |||||  ||||||||||||| ||||||||||| | || |||||||||| |||| || |||      
T  9131599 gagaagaagggttaccgagaaagagagatacaaagcagcaaaac-aaaaactagggttatggagagaagaagtaaagaggaatagcaagaagaatctaaa 9131697  T
Q  108 gagagatttcaccgtaggaaatcatcaa-ttcggcaaactagaggtaaggggagagtctctattcatcataagggttgtatgatcatacg 196  Q
    |||||||||    ||||||||||||||| ||||  ||||| ||||||||| | ||||||||||||| |||||| ||||||| ||||||||    
T  9131698 gagagattttgttgtaggaaatcatcaatttcgcaaaactcgaggtaaggag-gagtctctattcaccataagtgttgtataatcatacg 9131786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 54 - 189
Target Start/End: Original strand, 23632127 - 23632263
Alignment:
Q  54 aaaactagggttgtggagagaagaggcaaggaggaatagcgagaataacctatggagagatttcaccgtaggaaatcatc-aattcggcaaactagaggt 152  Q
    |||||||||||||| ||||||||||||||| ||| |||   |||  ||| ||  |||||||||||||||||||| ||||| ||||||  |||||||||||    
T  23632127 aaaactagggttgttgagagaagaggcaagaaggcatactaagagaaacgtagagagagatttcaccgtaggaactcatcaaattcgaaaaactagaggt 23632226  T
Q  153 aaggggagagtctctattcatcataagggttgtatga 189  Q
    |||||| |||| |||||| | |||| |||||| ||||    
T  23632227 aaggggggagtttctatttagcatatgggttgcatga 23632263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 120 - 163
Target Start/End: Original strand, 21494387 - 21494430
Alignment:
Q  120 cgtaggaaatcatcaattcggcaaactagaggtaaggggagagt 163  Q
    |||||||| |||| |||||| |||||||||||||||||||||||    
T  21494387 cgtaggaattcatgaattcgacaaactagaggtaaggggagagt 21494430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 6e-47; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 49 - 243
Target Start/End: Complemental strand, 9548889 - 9548696
Alignment:
Q  49 aaagaaaaactagggttgtggagagaagaggcaaggaggaatagcgagaataacctatggagagatttcaccgtaggaaatcatcaattcggcaaa--ct 146  Q
    |||| ||||||||||||||||||||||||| |||||||| |||||||||| ||| ||  ||||||||||||||||||||||||||||||  |||||  ||    
T  9548889 aaaggaaaactagggttgtggagagaagagacaaggaggcatagcgagaaaaacgta--gagagatttcaccgtaggaaatcatcaatttcgcaaaaact 9548792  T
Q  147 agaggtaaggggagagtctctattcatcataagggttgtatgatcatacgtgtagtgaagagtttatgtttt-acattgtttttcatgatcttttaat 243  Q
    |||| ||||||| |||||||| |||||||||||||||||||||||||| | |||||||||||||| ||||||    ||||||||||||||||||||||    
T  9548791 agagataaggggggagtctctgttcatcataagggttgtatgatcatatg-gtagtgaagagttt-tgttttctttttgtttttcatgatcttttaat 9548696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 27 - 185
Target Start/End: Original strand, 19768967 - 19769125
Alignment:
Q  27 aaagagacaaacaaagcgacaaaaagaaaaactagggttgtggagagaagaggcaaggaggaatagcgagaataacctatggagagatttcaccgtagga 126  Q
    ||||||| |||||||||||||||| ||||| ||||||||||||||| ||||| || | ||| | | |||||| || |||  |||||||||||||||||||    
T  19768967 aaagagagaaacaaagcgacaaaa-gaaaatctagggttgtggagaaaagagtcatg-aggcacaccgagaagaatctagagagagatttcaccgtagga 19769064  T
Q  127 aatcatcaa-ttcggcaaactagaggtaa-ggggagagtctctattcatcataagggttgt 185  Q
    | ||||||| |||  | |||||||||||| |||| ||||||||||||||||||||||||||    
T  19769065 attcatcaaattcttcgaactagaggtaatggggggagtctctattcatcataagggttgt 19769125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 8 - 158
Target Start/End: Complemental strand, 19893045 - 19892895
Alignment:
Q  8 gagatgaagggttaccgagaaagagacaaacaaagcgacaaaaagaaaaactagggttgtggagagaagaggcaaggaggaatagcgagaataacctatg 107  Q
    |||| ||||||||||| ||||||||| ||| | |||| ||||| ||||||||||||||||||||| ||||| |||| ||| | | |||||| || |||      
T  19893045 gagaagaagggttacctagaaagagagaaatagagcggcaaaa-gaaaaactagggttgtggagaaaagagtcaagcaggcacaccgagaagaatctaga 19892947  T
Q  108 gagagatttcaccgtaggaaatcatc-aattcggcaaactagaggtaagggg 158  Q
    |||| |||||| ||||| || ||||| |||||  | ||||||||||||||||    
T  19892946 gagaaatttcatcgtagaaattcatcaaattctccgaactagaggtaagggg 19892895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 49 - 252
Target Start/End: Original strand, 15285902 - 15286110
Alignment:
Q  49 aaagaaaaactagggttgtggagagaagaggcaaggaggaatagcgagaataacctatggagagatttcaccgtaggaaatcatcaa------ttcggca 142  Q
    |||||||| ||||  |||||||||||||| |||| || | |||| ||||| || ||   |||||||||||||||| ||| ||| |||      ||| | |    
T  15285902 aaagaaaatctagtattgtggagagaagacgcaaagaagcatagtgagaagaatctggagagagatttcaccgtaagaattcaccaaatataattctgta 15286001  T
Q  143 aactagaggtaaggggagagtctctattcatcataagggttgtatgatcatacgtgtagtgaagagtttatgttttacattgtttttcatgatcttttaa 242  Q
    ||||||| |||||| | |||||| |||||| ||||| ||||||||   |||| | |||| | || |||| |||||| ||||  |||||||||||||||||    
T  15286002 aactagaagtaaggagtgagtctttattcaccataaaggttgtatttacatatgggtagggtagggttt-tgttttccattagttttcatgatcttttaa 15286100  T
Q  243 tgaattcatg 252  Q
    ||||||||||    
T  15286101 tgaattcatg 15286110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 107 - 239
Target Start/End: Original strand, 19566895 - 19567028
Alignment:
Q  107 ggagagatttcaccgtaggaaatcatcaattcggcaaa-ctagaggtaaggggag-agtctctattcatcataagggttgtatgatcatacgtgtagtga 204  Q
    |||||||||  ||||||| || ||||| |||| ||||| ||||||| |||||| | ||||| |||||| |||||||||||| ||| |||| | |||||||    
T  19566895 ggagagattcaaccgtagaaattcatctattcagcaaaactagaggcaagggggggagtctgtattcaccataagggttgtgtgaacatatgggtagtga 19566994  T
Q  205 agagtttatgttttacattgtttttcatgatcttt 239  Q
    ||||||| |||||| |||| |||| ||| ||||||    
T  19566995 agagttt-tgttttccattattttgcataatcttt 19567028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 12987076 - 12987124
Alignment:
Q  89 atagcgagaataacctatggagagatttcaccgtaggaaatcatcaatt 137  Q
    |||||||||| ||||||  |||||||||||||||| | |||||||||||    
T  12987076 atagcgagaagaacctagagagagatttcaccgtatggaatcatcaatt 12987124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 54 - 263
Target Start/End: Original strand, 35452 - 35665
Alignment:
Q  54 aaaactagggttgtggagagaagaggcaaggaggaatagcgagaataacctatggagagatttcaccgtaggaaatcatcaa-ttcggcaaactagaggt 152  Q
    |||||||||||||||||||||| ||||||| ||| ||||| |||  ||| ||  |||||||||||||||||||| ||||||| |||| ||||||||||||    
T  35452 aaaactagggttgtggagagaaaaggcaagaaggcatagcaagaggaacgtagagagagatttcaccgtaggaactcatcaaattcgacaaactagaggt 35551  T
Q  153 aaggggagagtctctattcatcataagggttgtatgatcatacgtgtagtgaagagttt-atgttttacattgtttttcat--gatcttttaatgaattc 249  Q
    |||||| ||||||||||||| | |||||||||||| | |||| | ||||||||  |||| || ||||  ||| |||||| |  |||||||||  ||||||    
T  35552 aaggggggagtctctattcagcgtaagggttgtatcaacatatgggtagtgaaaggttttattttttttattatttttcttacgatcttttaccgaattc 35651  T
Q  250 atgttaaatttgtg 263  Q
    ||||||||||||||    
T  35652 atgttaaatttgtg 35665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 9e-37; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 13 - 194
Target Start/End: Complemental strand, 16093694 - 16093515
Alignment:
Q  13 gaagggttaccgagaaagagacaaacaaagcgacaaaaagaaaaactagggttgtggagagaagaggcaaggaggaatagcgagaataacctatggagag 112  Q
    |||| ||||||||| |||||| ||||||||| | |||  |||||||||||||| ||||||||| |||||| || |||||||||||  ||||||  |||||    
T  16093694 gaagagttaccgaggaagagagaaacaaagctagaaa--gaaaaactagggttatggagagaaaaggcaaagatgaatagcgagaggaacctagagagag 16093597  T
Q  113 atttcaccgtaggaaatcatcaattcggcaaactagaggtaaggggagagtctctattcatcataagggttgtatgatcata 194  Q
    ||||||| |||| || |||||| ||  |||||||||||||||| || ||||||||||||| |||||||||||||| ||||||    
T  16093596 atttcactgtagaaattcatcacttttgcaaactagaggtaagaggggagtctctattcaccataagggttgtataatcata 16093515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 8 - 211
Target Start/End: Original strand, 20263622 - 20263819
Alignment:
Q  8 gagatgaagggttaccgagaaagagacaaacaaagcgacaaaaagaaaaactagggttgtggagagaagaggcaaggaggaatagcgagaataacctatg 107  Q
    |||| ||||||||||| ||||||||| |||||||||| ||||| ||||||||||||||||||||| ||||| |||||||| | | |||||| || |||      
T  20263622 gagaagaagggttacctagaaagagagaaacaaagcggcaaaa-gaaaaactagggttgtggagaaaagagtcaaggaggcacaccgagaagaatctaaa 20263720  T
Q  108 gagagatttc-accgtaggaaatcatcaattcggcaaactagaggtaaggggagagtctctattcatcataagggttgtatgatcatacgtgtagtgaag 206  Q
    |||||||||| |||||||||| |||||||||  ||||||    ||||||||| |||| | |||||||||||| |||||||||| |||| | | |||||||    
T  20263721 gagagatttctaccgtaggaattcatcaattttgcaaac----ggtaaggggggagt-tatattcatcataa-ggttgtatgaacatatgagcagtgaag 20263814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 14 - 155
Target Start/End: Original strand, 27386861 - 27387002
Alignment:
Q  14 aagggttaccgagaaagagacaaacaaagcgacaaaaagaaaaactagggttgtggagagaagaggcaaggaggaatagcgagaataacctatggagaga 113  Q
    ||||||||| |||||||||| |||||||||| |||||  ||||| || |||||||||||||||||||||||||| || ||||||| ||||||  ||||||    
T  27386861 aagggttacggagaaagagagaaacaaagcggcaaaataaaaaa-taaggttgtggagagaagaggcaaggaggcatggcgagaagaacctagagagaga 27386959  T
Q  114 tttcaccgtaggaaatcatcaa-ttcggcaaactagaggtaag 155  Q
    ||||||||||| ||||||| || ||||  ||||||||||||||    
T  27386960 tttcaccgtagaaaatcattaatttcgcaaaactagaggtaag 27387002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 14 - 160
Target Start/End: Original strand, 32623525 - 32623671
Alignment:
Q  14 aagggttaccgagaaagagacaaacaaagcgacaaaaagaaaaactagggttgtggagagaagaggcaaggaggaatagcgagaataacctatggagaga 113  Q
    ||||||| |||||||||||| |||||||||| |||||| ||| ||||||||| ||||  |||||||||| |||||||| |||||| || |||  ||||||    
T  32623525 aagggttgccgagaaagagagaaacaaagcggcaaaaa-aaagactagggttatggaatgaagaggcaaagaggaataacgagaagaatctagagagaga 32623623  T
Q  114 tttcaccgtaggaaatcatcaattcggc-aaactagaggtaaggggag 160  Q
    ||||||||||| ||||||||||||  || |||||||||||| ||||||    
T  32623624 tttcaccgtagaaaatcatcaattttgcaaaactagaggtagggggag 32623671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 264
Target Start/End: Complemental strand, 16093466 - 16093423
Alignment:
Q  221 attgtttttcatgatcttttaatgaattcatgttaaatttgtgt 264  Q
    ||||||||||||||||||||||||||  ||||||||||| ||||    
T  16093466 attgtttttcatgatcttttaatgaaaccatgttaaattcgtgt 16093423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 259
Target Start/End: Complemental strand, 20180961 - 20180863
Alignment:
Q  160 gagtctctattcatcataagggttgtatgatcatacgtgtagtgaagagtttatgttttacattgtttttcatgatcttttaatgaattcatgttaaatt 259  Q
    |||| ||| |||| ||| |||| ||||||| || | | ||||||||||| || ||||||  ||||  ||||||||| |||||||||||||||||||||||    
T  20180961 gagtgtctgttcaccatgagggctgtatgaacacatgggtagtgaagagcttttgttttctattgggtttcatgat-ttttaatgaattcatgttaaatt 20180863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 193
Target Start/End: Original strand, 15266931 - 15267015
Alignment:
Q  108 gagagatttcaccgtaggaaatcatcaattcggcaaactagaggtaaggggagagtctctattcatcataagggttgtatgatcat 193  Q
    ||||||||  || ||||||| ||||||||||| ||||||||||||||| |  |||| | ||||||  |||||||||||||| ||||    
T  15266931 gagagattcaacggtaggaattcatcaattcgacaaactagaggtaagagaggagt-tttattcacaataagggttgtatgttcat 15267015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 74 - 189
Target Start/End: Complemental strand, 1955 - 1840
Alignment:
Q  74 aagaggcaaggaggaatagcgagaataacctatggagagatttcaccgtaggaaatcatcaattcggcaaactagaggtaaggggagagtctctattcat 173  Q
    ||||| ||| || |||||||||||| ||||||  ||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||| |     
T  1955 aagagacaaagaagaatagcgagaagaacctacagagagatttcaccgtaggaaatcatcaattctgcaaactagaggtatggggggagtctctatttac 1856  T
Q  174 cataagggttgtatga 189  Q
    ||||||||||||||||    
T  1855 cataagggttgtatga 1840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 8e-31; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 58 - 189
Target Start/End: Complemental strand, 17290751 - 17290619
Alignment:
Q  58 ctagggttgtggagagaagaggcaaggaggaatagcgagaataacctatggagagatttcaccgtaggaaatcatcaa-ttcggcaaactagaggtaagg 156  Q
    ||||||||||||||||||||| |||||||||||| |||||| ||||||  ||||||||| |||||| ||||| ||||| |||   ||| |||||||||||    
T  17290751 ctagggttgtggagagaagagacaaggaggaataacgagaagaacctagagagagattttaccgtatgaaattatcaatttctcaaaattagaggtaagg 17290652  T
Q  157 ggagagtctctattcatcataagggttgtatga 189  Q
    || ||||||||||||| ||||||||||||||||    
T  17290651 ggggagtctctattcaccataagggttgtatga 17290619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 23 - 218
Target Start/End: Complemental strand, 40391535 - 40391342
Alignment:
Q  23 cgagaaagagacaaacaaagcgacaaaaagaaaaactagggttgtggagagaagaggcaaggaggaatagcgagaataacctatggagagatttcaccgt 122  Q
    ||||||||||| |||||||||| ||||| |||||| ||||||| |||||||||||| ||| || |||||||||||| ||||||  ||||||||||| | |    
T  40391535 cgagaaagagagaaacaaagcggcaaaa-gaaaaattagggttatggagagaagagacaaagatgaatagcgagaagaacctaaagagagatttcaactt 40391437  T
Q  123 aggaaatcatcaa-ttcggcaaactagaggtaaggggagagtctctattcatcataagggttgtatgatcatacgtgtagtgaagagtttatgtttt 218  Q
    || ||| |||||| ||||  ||||||||||||||||| |||| | |||||||| |||||||| ||| | |||| | ||||||||| |||| ||||||    
T  40391436 agaaaaccatcaatttcgcaaaactagaggtaagggg-gagt-tttattcatcgtaagggttatataaacatatgagtagtgaagggtttgtgtttt 40391342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 172 - 269
Target Start/End: Complemental strand, 42147472 - 42147375
Alignment:
Q  172 atcataagggttgtatgatcatacgtgtagtgaagagtttatgttttacattgtttttcatgatcttttaatgaattcatgttaaatttgtgtccttt 269  Q
    |||||||| ||||||||| |||| | |||||||||  ||| | |||| |||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  42147472 atcataagtgttgtatgaacatatgggtagtgaaggttttttatttttcattgtttttcatgatcttttaatgaattcatgttacattcgtgtccttt 42147375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 9883798 - 9883702
Alignment:
Q  8 gagatgaagggttaccgagaaagagacaaacaaagcgacaaaaagaaaaactagggttgtggagagaagaggcaaggaggaatagcgagaataaccta 105  Q
    |||| ||||||||||||||||||||| ||||||||||  |||| |||||||||||||| |||| ||||||| ||| |||||||||| |||| ||||||    
T  9883798 gagaagaagggttaccgagaaagagagaaacaaagcgggaaaa-gaaaaactagggttatggaaagaagagacaaagaggaatagctagaagaaccta 9883702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 9883694 - 9883634
Alignment:
Q  124 ggaaatcatcaattcggcaaactagaggtaaggggagagtctctattcatcataagggttgt 185  Q
    |||||||||||||||  ||||||||||||| |||| |||| |||||| | ||||||||||||    
T  9883694 ggaaatcatcaattctacaaactagaggtatgggg-gagtttctatttaccataagggttgt 9883634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 42147607 - 42147521
Alignment:
Q  8 gagatgaagggttaccgagaaagagacaaacaaagcgacaaaaagaaaaactagggttgtggagagaagaggcaaggaggaatagcgag 96  Q
    |||| |||||||| || ||||||||| ||||||| || ||||   ||||| ||||||||||||||||| ||||||| ||| ||||||||    
T  42147607 gagaagaagggttgcc-agaaagagagaaacaaatcggcaaagt-aaaaattagggttgtggagagaacaggcaagaaggcatagcgag 42147521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 189
Target Start/End: Original strand, 45453823 - 45453891
Alignment:
Q  121 gtaggaaatcatcaattcggcaaactagaggtaaggggagagtctctattcatcataagggttgtatga 189  Q
    ||||||| |||||||||    ||||| |||||||||||| |||||||||||| ||| | ||||||||||    
T  45453823 gtaggaattcatcaattttttaaactggaggtaaggggatagtctctattcaccatgaaggttgtatga 45453891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 25 - 185
Target Start/End: Original strand, 18147539 - 18147699
Alignment:
Q  25 agaaagagacaaacaaagcgacaaaaagaaaaactagggttgtggagagaagaggcaaggaggaatagcgagaataacctatggagagatttcaccgtag 124  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||||| ||||| ||| |||| | | |||||| || |||  |||||||||| ||||||    
T  18147539 agaaagagagaaacaaagcgacaaaa-gaaaaactagggttgtggagaaaagagtcaa-gaggcacaccgagaagaatctagagagagatttcgccgtag 18147636  T
Q  125 gaaatcatc-aattcggcaaactagaggtaa-ggggagagtctctattcatcataagggttgt 185  Q
    ||| ||||| |||||  | |||||||||||| |||| ||||||||||||||||||||||||||    
T  18147637 gaattcatcaaattctccgaactagaggtaatggggggagtctctattcatcataagggttgt 18147699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 108 - 263
Target Start/End: Complemental strand, 3312715 - 3312560
Alignment:
Q  108 gagagatttcaccgtaggaaatcatcaattcggcaaactagaggtaaggggagagtctctattcatcataagggttgtatgatcatacgtgtagtgaaga 207  Q
    ||||||||  |||||||||| |||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||  ||  | |||||||||     
T  3312715 gagagattcaaccgtaggaagtcatcaattcggcaaactagagataagggg-gagtctctattcat-ataagggttgtatgaatatgtgggtagtgaagg 3312618  T
Q  208 gtttatgttttacat--tgtttttcatgatcttttaatgaattcatgttaaatttgtg 263  Q
    |||| |||||| | |  |  |||||| |||||||||||||||| |||||| |||||||    
T  3312617 gtttgtgtttttcttccttgttttcacgatcttttaatgaatttatgttatatttgtg 3312560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 67 - 204
Target Start/End: Complemental strand, 32945463 - 32945329
Alignment:
Q  67 tggagagaagaggcaaggaggaatagcgagaataacctatggagagatttcaccgtaggaaatcatcaa-ttcggcaaactagaggtaaggggagagtct 165  Q
    |||||||||||||||| |||||||||| |||| ||| ||  ||||||||||| |||||||||||||||| ||||  ||||||||||||||||| |||| |    
T  32945463 tggagagaagaggcaaagaggaatagccagaagaactta--gagagatttcaacgtaggaaatcatcaatttcgcaaaactagaggtaaggggggagt-t 32945367  T
Q  166 ctattcatcataagggttgtatgatcatacgtgtagtga 204  Q
     |||||||||||| |||||||||| |||| | |||||||    
T  32945366 atattcatcataa-ggttgtatgaacatatgggtagtga 32945329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 108 - 189
Target Start/End: Complemental strand, 3311014 - 3310935
Alignment:
Q  108 gagagatttcaccgtaggaaatcatcaattcggcaaactagaggtaaggggagagtctctattcatcataagggttgtatga 189  Q
    ||||||||  || ||||||| ||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||    
T  3311014 gagagattcaacagtaggaagtcatcaattcgacaaactagaggtaagggg-gagtctctattcat-ataagggttgtatga 3310935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 118 - 206
Target Start/End: Complemental strand, 13696128 - 13696040
Alignment:
Q  118 accgtaggaaatcatcaattcggcaaactagaggtaaggggagagtctctattcatcataagggttgtatgatcatacgtgtagtgaag 206  Q
    ||||||| || ||||||||||||||||||||||| ||||||||||||| | ||||||| ||||| || |||| |||| | |||||||||    
T  13696128 accgtagaaattcatcaattcggcaaactagagggaaggggagagtctatcttcatcacaagggatgcatgaacatatgggtagtgaag 13696040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 118 - 194
Target Start/End: Complemental strand, 13695920 - 13695844
Alignment:
Q  118 accgtaggaaatcatcaattcggcaaactagaggtaaggggagagtctctattcatcataagggttgtatgatcata 194  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||| | |||| || ||||| || |||| ||||    
T  13695920 accgtagaaattcatcaattcggcaaactagaggtaaggggagagtctatcttcaccacaagggatgcatgaacata 13695844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 8 - 185
Target Start/End: Original strand, 11508628 - 11508804
Alignment:
Q  8 gagatgaagggttaccgagaaagagacaaacaaagcgacaaaaagaaaaactagggttgtggagagaagaggcaaggaggaatagcgagaataacctatg 107  Q
    |||| ||||||||||  || |||||| |||||||||| ||||| |||||  |||||||||||||| |||||  ||||||| | | |||||| || |||      
T  11508628 gagaagaagggttacttagcaagagagaaacaaagcggcaaaa-gaaaacatagggttgtggagaaaagagttaaggaggcaaaccgagaagaatctaga 11508726  T
Q  108 gagagatttcaccgtaggaaatcatc-aattcggcaaactagaggtaaggggagagtctctattcatcataagggttgt 185  Q
    ||||||||| || |||| || ||||| |||||  | |||||||||||||||| |||| | |||||||  ||||||||||    
T  11508727 gagagattttacagtagtaattcatcaaattctccgaactagaggtaaggggggagt-tttattcattgtaagggttgt 11508804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 198 - 264
Target Start/End: Original strand, 21859820 - 21859885
Alignment:
Q  198 gtagtgaagagtttatgttttacattgtttttcatgatcttttaatgaattcatgttaaatttgtgt 264  Q
    |||||||||||||| |||||  |||||||||||||||| ||||||||||||  ||||||||||||||    
T  21859820 gtagtgaagagtttttgtttc-cattgtttttcatgattttttaatgaatttgtgttaaatttgtgt 21859885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 264
Target Start/End: Original strand, 16250380 - 16250488
Alignment:
Q  151 gtaaggggagagtctctattcatcataagggttgtatgatcatacgtgtagtgaagagtttatgttttacattgtttttcatgatcttttaatgaattca 250  Q
    |||||||| |||||||||||||||||||||||||||||| |||  | |||| |||| |||| ||||    |||  ||||||| |||||||||  | ||||    
T  16250380 gtaaggggggagtctctattcatcataagggttgtatgaacatgtgggtagcgaagggtttgtgtt----attccttttcat-atcttttaacaagttca 16250474  T
Q  251 tgttaaatttgtgt 264  Q
    ||||||||||||||    
T  16250475 tgttaaatttgtgt 16250488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 82
Target Start/End: Complemental strand, 22949205 - 22949172
Alignment:
Q  49 aaagaaaaactagggttgtggagagaagaggcaa 82  Q
    |||||||||||||||||||||||| |||||||||    
T  22949205 aaagaaaaactagggttgtggagaaaagaggcaa 22949172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 158
Target Start/End: Complemental strand, 33721370 - 33721258
Alignment:
Q  49 aaagaaaaactaggg-ttgtggagagaagaggcaaggaggaatagcgagaataacctatggagagatttc-accgtaggaaatcatcaattcggc-aaac 145  Q
    |||| |||||||||| ||||||||| |||||  ||||||  |||||||||| ||||||  |||||||||| || |||| || ||||| |||| || ||||    
T  33721370 aaaggaaaactaggggttgtggagaaaagagataaggagacatagcgagaagaacctagagagagatttcaacggtagaaattcatctattctgcaaaac 33721271  T
Q  146 tagaggtaagggg 158  Q
    ||||| |||||||    
T  33721270 tagagataagggg 33721258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 118 - 242
Target Start/End: Complemental strand, 48321 - 48198
Alignment:
Q  118 accgtaggaaatcatcaattcggcaaactagaggtaaggggagagtctctattcatcataagggttgtatgatcatacgtgtagtgaagagtttatgttt 217  Q
    |||||||||| |||||||||||| ||||||||||||||||| ||||||||||||| ||||||| ||||||||||||| | ||||||||| | || || ||    
T  48321 accgtaggaattcatcaattcggaaaactagaggtaaggggggagtctctattcaccataaggattgtatgatcatatgggtagtgaag-gcttttg-tt 48224  T
Q  218 tacattgttttt-catgatcttttaa 242  Q
    | |||||||||| |||||||||||||    
T  48223 tccattgtttttccatgatcttttaa 48198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 55 - 158
Target Start/End: Complemental strand, 183073 - 182969
Alignment:
Q  55 aaactagggttgtggagagaagaggcaaggaggaatagcgagaataacctatggagagatttcaccgtaggaaatcatc-aattcggcaaactagaggta 153  Q
    ||||||||||||||||||||||||||||||||| |||| ||||  ||| ||   |||||||||||||||| |||||||| ||||| ||||||||||||||    
T  183073 aaactagggttgtggagagaagaggcaaggaggcatagggagaggaacgtagatagagatttcaccgtagaaaatcatcaaattctgcaaactagaggta 182974  T
Q  154 agggg 158  Q
    |||||    
T  182973 agggg 182969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 172
Target Start/End: Original strand, 171372 - 171527
Alignment:
Q  17 ggttaccgagaaagagacaaacaaagcgacaaaaagaaaaactagggttgtggagagaagaggc-aaggaggaatagcgagaataacctatggagagatt 115  Q
    ||||||| ||||||||| |||||||||  |||||||||||||||||||||| |||||||||||| || |||  | || || || | | ||  ||||||||    
T  171372 ggttaccaagaaagagagaaacaaagctgcaaaaagaaaaactagggttgtagagagaagaggcaaaagagacaaagagataagagcttaaagagagatt 171471  T
Q  116 tcaccgtaggaaatcatcaattcggcaaactagaggtaaggggagagtctctattca 172  Q
      || || |||| |||||||||||| ||||||||||||||||| |||||||||||||    
T  171472 caactgtgggaagtcatcaattcggaaaactagaggtaagggg-gagtctctattca 171527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 8 - 86
Target Start/End: Complemental strand, 39176594 - 39176517
Alignment:
Q  8 gagatgaagggttaccgagaaagagacaaacaaagcgacaaaaagaaaaactagggttgtggagagaagaggcaaggag 86  Q
    |||| ||||||||| ||||||||||| |||||||||| ||||| ||||||||||| |||||||||||||| ||||||||    
T  39176594 gagaagaagggttatcgagaaagagagaaacaaagcggcaaaa-gaaaaactaggattgtggagagaagatgcaaggag 39176517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 58 - 179
Target Start/End: Original strand, 39435924 - 39436045
Alignment:
Q  58 ctagggttgtggagagaagaggcaaggaggaatagcgagaataacctatggagagatttcaccgtaggaaatcatcaa-ttcggcaaactagaggtaagg 156  Q
    ||||| || ||||||||||| ||||| ||| ||||  |||| || |||  |||||||||||||||||||||||||||| |||   |||||||||||||||    
T  39435924 ctaggattttggagagaagatgcaagaaggcatagtaagaagaatctaaagagagatttcaccgtaggaaatcatcaatttcacaaaactagaggtaagg 39436023  T
Q  157 ggagagtctctattcatcataag 179  Q
    || ||||||||||||| ||||||    
T  39436024 gg-gagtctctattcaccataag 39436045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 107 - 185
Target Start/End: Complemental strand, 39176520 - 39176440
Alignment:
Q  107 ggagagatttcaccgtaggaaatcatcaattcggcaaa-ctagaggtaaggggaga-gtctctattcatcataagggttgt 185  Q
    |||||||||||||| ||| ||||||||||||  ||||| |||||||||| ||| || ||||||||||||||||||||||||    
T  39176520 ggagagatttcaccatagaaaatcatcaatttcgcaaaactagaggtaatgggggaagtctctattcatcataagggttgt 39176440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 21143860 - 21143919
Alignment:
Q  18 gttaccgagaaagagacaaacaaagcgacaaaaagaaaaactagggttgtggagagaagag 78  Q
    |||||||||||||||  |||||||| | ||||| ||||||||||||||||||||| |||||    
T  21143860 gttaccgagaaagagtgaaacaaagaggcaaaa-gaaaaactagggttgtggagaaaagag 21143919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0323 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 8 - 206
Target Start/End: Complemental strand, 16422 - 16224
Alignment:
Q  8 gagatgaagggttaccgagaaagagacaaacaaagcgacaaaaagaaaaactagggttgtggagagaagaggcaaggaggaatagcgagaataacctatg 107  Q
    |||| ||||||||| ||||| ||| | |||||||||  |||||   |||||||||||| |||||||||||| |||||||| |||| ||||| |||   |     
T  16422 gagaagaagggttagcgagagagaaagaaacaaagctgcaaaag--aaaactagggttttggagagaagagacaaggaggcatagtgagaagaac---ta 16328  T
Q  108 gagagatttcac-cgtaggaaatcatca----attcggcaaactagaggtaaggggagagtctctattcatcataagggttgtatgatcatacgtgtagt 202  Q
    ||||||||| |  |||| ||||||||||    ||||   |||||||||||||||||  |||||||||||| || |||||||||||||||||  | |||||    
T  16327 gagagatttaaatcgtaagaaatcatcatcaaattctctaaactagaggtaagggggaagtctctattcaccaaaagggttgtatgatcatgtgggtagt 16228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0815 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 167 - 253
Target Start/End: Complemental strand, 1364 - 1279
Alignment:
Q  167 tattcatcataagggttgtatgatcatacgtgtagtgaagagtttatgttttacattgtttttcatgatcttttaatgaattcatgt 253  Q
    |||||||||||||| |||||||| |||| | |||||||||  ||  ||||||  |||||||||||||||||||||||||||| ||||    
T  1364 tattcatcataagg-ttgtatgaccatatgggtagtgaaggattgttgttttctattgtttttcatgatcttttaatgaattaatgt 1279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0978 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0978
Description:

Target: scaffold0978; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 2953 - 2912
Alignment:
Q  48 aaaagaaaaactagggttgtggagagaagaggcaaggaggaa 89  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  2953 aaaagaaaaactagggttgtggagagacgaggcaaggaggaa 2912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University