View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14110_low_7 (Length: 418)
Name: NF14110_low_7
Description: NF14110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14110_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 33630703 - 33631103
Alignment:
| Q |
1 |
cttttccatttatctaacatcctccactgcctcttcaaacaactaatctaaggcaaatttgtaggaacctaggtaaacctagtgaaagaaggcacactat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33630703 |
cttttccatttatctaacatcctccactgcctcttcaaacaactaatctaaggcaaatttgtaggaacctaggtaaacctagtgaaagaaggcacactat |
33630802 |
T |
|
| Q |
101 |
tatataattatactctgactcaaccattattttttagactttagttgagatgagaataacttggactatgtactgattgattttatgaatgaattttacg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33630803 |
tatataattatactctgactcaaccattattttttagactttagttgagatgagaataacttggactatgtactgattgattttatgaatgaattttacg |
33630902 |
T |
|
| Q |
201 |
gtaatagaaaatgaaaaacatagattgactaggctccatatcatctcgtaacaagtggaaaaaagttcaatgcaaagaattttgtactggattgaattga |
300 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33630903 |
gtaata------gaaaaacatagattgactaggctccatatcatctcgtaacaagtggaaaaaagttcaatgcaaagaattttgtactggattgaattga |
33630996 |
T |
|
| Q |
301 |
attttttgagattgttgtattaacaaaaagattttgtaaac--aaaccatttgatatttgacttcattagctaaacactgactaataccataatcaggta |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33630997 |
attttttgagattgttgtattaacaaaaagattttgtaaacagaaaccatttgatatttgacttcattagctaaacactgactaataccataatcaggta |
33631096 |
T |
|
| Q |
399 |
acccttc |
405 |
Q |
| |
|
||||||| |
|
|
| T |
33631097 |
acccttc |
33631103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 130; Significance: 3e-67; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 213 - 399
Target Start/End: Original strand, 4043214 - 4043402
Alignment:
| Q |
213 |
gaaaaacatagattgactaggctccatatcatctcgtaacaagtggaaaaaagttcaatgcaaagaattttgtactggattgaattgaattttttgagat |
312 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||| ||||||| ||||||| |||||||||| ||||||||||| |
|
|
| T |
4043214 |
gaaaaacatagattgactaggctccatattatctggtaacaagtgggaaaaagttcaatacaaagaactttgtaccggattgaatttttttttttgagat |
4043313 |
T |
|
| Q |
313 |
tgttgtattaacaaaaagattttgtaaac--aaaccatttgatatttgacttcattagctaaacactgactaataccataatcaggtaa |
399 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4043314 |
cgttgtattaacaaatagattttgtaaacagaaactatttgatatttgacttcattagctaaacactgactaataccataatcaggtaa |
4043402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 114 - 211
Target Start/End: Complemental strand, 26663650 - 26663553
Alignment:
| Q |
114 |
tctgactcaaccattattttttagactttagttgagatgagaataacttggactatgtactgattgattttatgaatgaattttacggtaatagaaaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
26663650 |
tctgactcaaccattattttttagacttgagttgagatgagaataacttgaactatgtactggttgattttatgaatgaattttacggcaatggaaaa |
26663553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 227 - 354
Target Start/End: Complemental strand, 29194968 - 29194837
Alignment:
| Q |
227 |
gactaggctccatatcatctcgtaacaagtggaaaaaagttcaatgcaaagaattttgtactggattgaattg--aattttttgagattgttgtattaac |
324 |
Q |
| |
|
||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||| |||||| | ||||||||| |
|
|
| T |
29194968 |
gactatgctccatatcatttggtaacaagtggaaaaaagttcaatgcaaagaattttgtaccggattgaattgaaaaatttatgagatcgctgtattaac |
29194869 |
T |
|
| Q |
325 |
aaaaagattttgtaaac--aaaccatttgata |
354 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |
|
|
| T |
29194868 |
aaaaagattttgtaaacagaaaccatttgata |
29194837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 2 - 110
Target Start/End: Complemental strand, 26666262 - 26666154
Alignment:
| Q |
2 |
ttttccatttatctaacatcctccactgcctcttcaaacaactaatctaaggcaaatttgtaggaacctaggtaaacctagtgaaagaaggcacactatt |
101 |
Q |
| |
|
|||||||||||||| ||||||| | |||||| |||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
26666262 |
ttttccatttatctcacatccttcgctgccttttcacacaactaatctaaggcaattttgtatgaacctaggtaaacctagtgaaagaaggcacgcaatt |
26666163 |
T |
|
| Q |
102 |
atataatta |
110 |
Q |
| |
|
||||||||| |
|
|
| T |
26666162 |
atataatta |
26666154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 304 - 399
Target Start/End: Complemental strand, 26663545 - 26663448
Alignment:
| Q |
304 |
ttttgagattgttgtattaacaaaaagattttgtaaacaaa--ccatttgatatttgacttcattagctaaacactgactaataccataatcaggtaa |
399 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| |||||| |||| ||||||||| |
|
|
| T |
26663545 |
ttttgagaacgttgtattaacaaaaagattttgtaaacaaaaaccatttgatatctgacttcattagcttaacaccgactaaaaccaatatcaggtaa |
26663448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 123 - 170
Target Start/End: Complemental strand, 29195009 - 29194962
Alignment:
| Q |
123 |
accattattttttagactttagttgagatgagaataacttggactatg |
170 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29195009 |
accattattttttagactttagttgagatgagaataacttggactatg |
29194962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 29195090 - 29195012
Alignment:
| Q |
1 |
cttttccatttatct-aacatcctccactgcctcttcaaacaactaatctaaggcaaatttgtaggaacctaggtaaac |
78 |
Q |
| |
|
||||| ||||||||| ||||||||| |||| |||| ||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
29195090 |
ctttttcatttatcttaacatcctcacttgccatttcacacaactaatctaaagcaaatttttaggaacctaggtaaac |
29195012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University