View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14110_low_8 (Length: 366)
Name: NF14110_low_8
Description: NF14110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14110_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 49 - 350
Target Start/End: Complemental strand, 3695955 - 3695648
Alignment:
| Q |
49 |
gatttgtccagcaaacagcattaacgtgtacattattcattgtcaaattaataatctaccaaacatggcataatataattagcagaaaactgaatctctt |
148 |
Q |
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| T |
3695955 |
gatttgtccagcaaacagcattaacgtgtacattattcattgtcaaattaataatctaccaaacatggcataatataattagcagaaaactgaatctctt |
3695856 |
T |
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| Q |
149 |
aaatatatggtaaaggtttgatctcaaactaatatgttatttcttcc----nnnnnnnnnnctcaaactaatatgttatcaaag-tgattaatcaagtga |
243 |
Q |
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| T |
3695855 |
aaatatatggtaaaggtttgatctcaaactaatatgttatttcttccaaaaaaaaaaaaaactcaaactaatatgttatcaaagttgattaatcaagtga |
3695756 |
T |
|
| Q |
244 |
atttcaaatctcaacacctcaagtgattaatcatt-agtcctcccaaaactataccttttgtgttagagtctaacacaaactgtgcaggcacactaagtg |
342 |
Q |
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|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3695755 |
atttcaaatctcaacacctcaagtgattaaccattgagtcctcccaaaactataccttttgtgttagagtctaacacaaactgtgcaggcacactaagtg |
3695656 |
T |
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| Q |
343 |
ggaagaat |
350 |
Q |
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|||||||| |
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| T |
3695655 |
ggaagaat |
3695648 |
T |
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