View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14110_low_9 (Length: 332)
Name: NF14110_low_9
Description: NF14110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14110_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 128 - 316
Target Start/End: Complemental strand, 4651882 - 4651694
Alignment:
| Q |
128 |
gtacaaactagaagcaaacaagcacataaaaggcttgtatgaagttaaacaacattgggttccggcgtatcttcgtggacatttctttgagggcatgaca |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4651882 |
gtacaaactagaagcaaacaagcacataaaaggcttgtatgaagttaaacaacattgggttccggcgtatcttcgtggacatttctttgggggcatgaca |
4651783 |
T |
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| Q |
228 |
acaacttgaagattagagagcatagatggattcctaaaacgctttacttcatttcgttcatgtttaactcaacttttcaaacaagtaag |
316 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4651782 |
acaacttgaagatcagagagcatagatggattcctaaaacgctttacttcatctcgttcatgtttaactcaacttttcaaacaagtaag |
4651694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 4651961 - 4651858
Alignment:
| Q |
24 |
aatgtgcttatttttataagctttaccagcttgacaatattgatgattttgaataagaatggattataattgtttccaagtacaaactagaagcaaataa |
123 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4651961 |
aatgtgcttatttttataagctctaccagcttgacaatattgatgattttgaagaagaatggattataattgtttccaagtacaaactagaagcaaacaa |
4651862 |
T |
|
| Q |
124 |
gcac |
127 |
Q |
| |
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|||| |
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| T |
4651861 |
gcac |
4651858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 128 - 316
Target Start/End: Complemental strand, 16149275 - 16149087
Alignment:
| Q |
128 |
gtacaaactagaagcaaacaagcacataaaaggcttgtatgaagttaaacaacattgggttccggcgtatcttcgtggacatttctttgagggcatgaca |
227 |
Q |
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| T |
16149275 |
gtacaatctagaagcaaataagcacataaaaggcttgtatgaagttaagcaacattgggttccggcgtatcttcgtggacatttctttgggggcatgaca |
16149176 |
T |
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| Q |
228 |
acaacttgaagattagagagcatagatggattcctaaaacgctttacttcatttcgttcatgtttaactcaacttttcaaacaagtaag |
316 |
Q |
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|||||| |||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
16149175 |
acaactggaagatcagagagcataaatggattcctaaaacgctttacttcatctcgttcatgtttaactcaacttttcaaacaagtaag |
16149087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 16149352 - 16149251
Alignment:
| Q |
26 |
tgtgcttatttttataagctttaccagcttgacaatattgatgattttgaataagaatggattataattgtttccaagtacaaactagaagcaaataagc |
125 |
Q |
| |
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|||||| ||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
16149352 |
tgtgctgatttttataagctttacaagcttgacaatattgatgatttcgaagaagaatggattataattgtttccaagtacaatctagaagcaaataagc |
16149253 |
T |
|
| Q |
126 |
ac |
127 |
Q |
| |
|
|| |
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|
| T |
16149252 |
ac |
16149251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 128 - 316
Target Start/End: Original strand, 23302786 - 23302974
Alignment:
| Q |
128 |
gtacaaactagaagcaaacaagcacataaaaggcttgtatgaagttaaacaacattgggttccggcgtatcttcgtggacatttctttgagggcatgaca |
227 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
23302786 |
gtacaatctagaagcaaataagcacataaaaggcttgtatgaagttaagcaacattgggttccggcgtatcttcgtggacatttctttgggggcatgaca |
23302885 |
T |
|
| Q |
228 |
acaacttgaagattagagagcatagatggattcctaaaacgctttacttcatttcgttcatgtttaactcaacttttcaaacaagtaag |
316 |
Q |
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|||||| |||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
23302886 |
acaactggaagatcagagagcataaatggattcctaaaacgctttacttcatctcgttcatgtttaactcaacttttcaaacaagtaag |
23302974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 26 - 127
Target Start/End: Original strand, 23302709 - 23302810
Alignment:
| Q |
26 |
tgtgcttatttttataagctttaccagcttgacaatattgatgattttgaataagaatggattataattgtttccaagtacaaactagaagcaaataagc |
125 |
Q |
| |
|
|||||| ||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
23302709 |
tgtgctgattttcataagctttacaagcttgacaatattgatgattttgaagaagaatggattataattgtttccaagtacaatctagaagcaaataagc |
23302808 |
T |
|
| Q |
126 |
ac |
127 |
Q |
| |
|
|| |
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|
| T |
23302809 |
ac |
23302810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 248 - 316
Target Start/End: Complemental strand, 36758532 - 36758464
Alignment:
| Q |
248 |
catagatggattcctaaaacgctttacttcatttcgttcatgtttaactcaacttttcaaacaagtaag |
316 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36758532 |
cataaatggattcctaaaacgctttacttcatctcgttcatgtttaactcaacttttcaaacaagtaag |
36758464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 248 - 316
Target Start/End: Complemental strand, 40109678 - 40109610
Alignment:
| Q |
248 |
catagatggattcctaaaacgctttacttcatttcgttcatgtttaactcaacttttcaaacaagtaag |
316 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40109678 |
cataaatgaattcctaaaacgctttacttcatctcgttcatgtttaactcaacttttcaaacaagtaag |
40109610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 256 - 316
Target Start/End: Complemental strand, 19083363 - 19083303
Alignment:
| Q |
256 |
gattcctaaaacgctttacttcatttcgttcatgtttaactcaacttttcaaacaagtaag |
316 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
19083363 |
gattcctaaaacgctttacttcatctcgttcatgtttaacccaacttttcaaacaagtaag |
19083303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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