View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14111_high_11 (Length: 272)
Name: NF14111_high_11
Description: NF14111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14111_high_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 27 - 249
Target Start/End: Complemental strand, 32148886 - 32148664
Alignment:
| Q |
27 |
taataatggcaacatcgtgttaaatacaaagaaacgtgacaatcatatttgacgttttttatttaacatctcaaatggcaactctatcaatatcccatgc |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32148886 |
taataatggcaacatcgtgttaaatacaaagaaacgtgacaatcatatttgacgttttttatttaacatctcaaatggcaactctatcaatatcccatgc |
32148787 |
T |
|
| Q |
127 |
aatataaatagagatgcctcaacaccatcttctcaaactcaataccatacactaatacactatttttactctcaagccatggctaaatacaatttccaac |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32148786 |
aatataaatagagatgcctcaacaccatcttctcaaactcaataccatacactaatacactatttttactctcaagccatggctaaatacaatttccaac |
32148687 |
T |
|
| Q |
227 |
acttcattacaatccttctccta |
249 |
Q |
| |
|
|||||||||||| ||| |||||| |
|
|
| T |
32148686 |
acttcattacaaccctcctccta |
32148664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 127 - 249
Target Start/End: Complemental strand, 32139387 - 32139274
Alignment:
| Q |
127 |
aatataaatagagatgcctcaacaccatcttctcaaactcaataccatacactaatacactatttttactctcaagccatggctaaatacaatttccaac |
226 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||||||||| ||| || || ||||| ||| |||||||||||| | |||||| |||| |
|
|
| T |
32139387 |
aatataaatagacctgcctcaacaccatcttcacaaactcaatatcatttac---------atctttacactctagccatggctaattccaattttcaac |
32139297 |
T |
|
| Q |
227 |
acttcattacaatccttctccta |
249 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
32139296 |
acttcattacaatccttctccta |
32139274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University