View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14111_high_19 (Length: 243)
Name: NF14111_high_19
Description: NF14111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14111_high_19 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 9e-85; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 43435540 - 43435722
Alignment:
| Q |
15 |
gagatgaagagtgtcggtcatgaattggatcttgatacttacattaagatatcgaggcagcttcaaaagaataagatgatggaggatgctgtcaagcttt |
114 |
Q |
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| T |
43435540 |
gagatgaagagtgtcggtcatgaattggatcttaatacttacattaagatatcgaggaagcttcaaaagaataagatgatggaggatgctgtcaagcttt |
43435639 |
T |
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| Q |
115 |
atgagcatatgatggatagttcatatcagccatcagttctggattgcattatgcttttacagagcatatctgcaagcgataag |
197 |
Q |
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| T |
43435640 |
atgagcatatgatggatagttcatataagccttcagttctggattgcattatgcttttaaagagcatctctgcaagcgataag |
43435722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 15 - 197
Target Start/End: Original strand, 43443734 - 43443916
Alignment:
| Q |
15 |
gagatgaagagtgtcggtcatgaattggatcttgatacttacattaagatatcgaggcagcttcaaaagaataagatgatggaggatgctgtcaagcttt |
114 |
Q |
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| T |
43443734 |
gagatgaagagtgtcggtcatgaattggatcttaatacttacattaagatatcgaggaagcttcaaaagaataagatgatggaggatgctgtcaagcttt |
43443833 |
T |
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| Q |
115 |
atgagcatatgatggatagttcatatcagccatcagttctggattgcattatgcttttacagagcatatctgcaagcgataag |
197 |
Q |
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| T |
43443834 |
atgagcatatgatggatagttcatataagccttcagttctggattgcattatgcttttaaagagcatctctgcaagcgataag |
43443916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 43427035 - 43427205
Alignment:
| Q |
15 |
gagatgaagagtgtcggtcatgaattggatcttgatacttacattaagatatcgaggcagcttcaaaagaataagatgatggaggatgctgtcaagcttt |
114 |
Q |
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| T |
43427035 |
gagatgaagagtgtcggtcatgaattggatcttgatacttacattaagatatcgaggcagcttctaaataataggatgatggaggacagtgtcaagcttt |
43427134 |
T |
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| Q |
115 |
atgagcatatgatggatagttcatatcagccatcagttctggattgcattatgcttttacagagcatatct |
185 |
Q |
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| T |
43427135 |
acgagcatatgatggatagttcatataagcctacagctccggattgcattgtgcttttaaagagcctatct |
43427205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 153
Target Start/End: Original strand, 43422457 - 43422595
Alignment:
| Q |
15 |
gagatgaagagtgtcggtcatgaattggatcttgatacttacattaagatatcgaggcagcttcaaaagaataagatgatggaggatgctgtcaagcttt |
114 |
Q |
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| T |
43422457 |
gagatgaagagtgtgaattatgaattggagattgatacttatatgaagataacaatgcagtttgtaaagaatcagatgatgaaggatgctgttaagcttt |
43422556 |
T |
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| Q |
115 |
atgagcatatgatggatagttcatatcagccatcagttc |
153 |
Q |
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| T |
43422557 |
acgagcttatgatggatggttcatatgagccatcggttc |
43422595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 62 - 197
Target Start/End: Original strand, 21050 - 21185
Alignment:
| Q |
62 |
gatatcgaggcagcttcaaaagaataagatgatggaggatgctgtcaagctttatgagcatatgatggatagttcatatcagccatcagttctggattgc |
161 |
Q |
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| T |
21050 |
gatatcgaggcagcttcaaaagaataagatgatggaggatgttgtcaagctttatgagcatatgatggatagttcatataagccatcagttctggattgc |
21149 |
T |
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| Q |
162 |
attatgcttttacagagcatatctgcaagcgataag |
197 |
Q |
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| T |
21150 |
attatgcttttaaagagcacatctgcaagcgataag |
21185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 40186262 - 40186092
Alignment:
| Q |
15 |
gagatgaagagtgtcggtcatgaattggatcttgatacttacattaagatatcgaggcagcttcaaaagaataagatgatggaggatgctgtcaagcttt |
114 |
Q |
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|||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||| |||||| ||||||||| | |||| |
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| T |
40186262 |
gagatgaagagtgtcggtcatgaattggatctcaatacttccataaagatatcgaggcagcttcaagagaataggatgatgga---------cgggcttc |
40186172 |
T |
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| Q |
115 |
atgagcatatgatggatagttcatatcagccatcagttctggattgcattatgcttttacagagcatatctgcaagcgat |
194 |
Q |
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| T |
40186171 |
atgagcatatgatggatagttcatacaagccatcagttctggactgcattatgcttttaaagaacatcgctgaaagcgat |
40186092 |
T |
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