View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14111_high_26 (Length: 209)
Name: NF14111_high_26
Description: NF14111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14111_high_26 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 3e-99; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 3e-99
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 31057086 - 31057272
Alignment:
| Q |
1 |
ttctttctaataacaccaagatgtctggtccaattccacattccttgtggaacatgtctagcttgaccgtactctactttgataacataggtctttctgg |
100 |
Q |
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| T |
31057086 |
ttctttctaataacaccaagatgtctggtccaattccacattccttgtggaacatgtctagcttgaccgtactctactttgataacataggtctttctgg |
31057185 |
T |
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| Q |
101 |
ttcaatccttgattccatacaaaacttggttaatttgaaggaacttgcacttgatatcaatcacctttctggatccattccttccac |
187 |
Q |
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| T |
31057186 |
ttcaatccctgattccatacaaaacttggttaatttgaaggaacttgcacttgatatcaatcacctttctggatccattccttccac |
31057272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 7 - 187
Target Start/End: Original strand, 31101527 - 31101707
Alignment:
| Q |
7 |
ctaataacaccaagatgtctggtccaattccacattccttgtggaacatgtctagcttgaccgtactctactttgataacataggtctttctggttcaat |
106 |
Q |
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| T |
31101527 |
ctaataacaccaagttgtatggaccaattcctcactccttgtggaacatgtctagcttgaccttgatctacctttataacatgagtctttctggttcaat |
31101626 |
T |
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| Q |
107 |
ccttgattccatacaaaacttggttaatttgaaggaacttgcacttgatatcaatcacctttctggatccattccttccac |
187 |
Q |
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| T |
31101627 |
ccctgattcagtacaaaacttgattaatttggatgtacttgcactttatatgaataacctttctggattcattccttccac |
31101707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 7 - 187
Target Start/End: Original strand, 31138904 - 31139084
Alignment:
| Q |
7 |
ctaataacaccaagatgtctggtccaattccacattccttgtggaacatgtctagcttgaccgtactctactttgataacataggtctttctggttcaat |
106 |
Q |
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| T |
31138904 |
ctaaaaacaccaagttgtatggaccaattcctcactccttgtggaacatgtctagcttgaccttgatctacctttttaacatgagtctttctggttcaat |
31139003 |
T |
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| Q |
107 |
ccttgattccatacaaaacttggttaatttgaaggaacttgcacttgatatcaatcacctttctggatccattccttccac |
187 |
Q |
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| T |
31139004 |
ccctgaatctgtcgaaaacttgattaatgtgaatgagcttgcacttgatcgcaatcgcctttctggaaccattccttccac |
31139084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 3 - 187
Target Start/End: Original strand, 31182615 - 31182799
Alignment:
| Q |
3 |
ctttctaataacaccaagatgtctggtccaattccacattccttgtggaacatgtctagcttg-accgtactctactttgataacataggtctttctggt |
101 |
Q |
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|||| ||||||||| ||| | ||||||||||||||||| |||||||||||||||||||||||| || || |||||| ||||||| ||||||||||| |
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| T |
31182615 |
ctttgtaataacacaaaggtttctggtccaattccacactccttgtggaacatgtctagcttgaacactatcttacttt-ataacatgagtctttctggt |
31182713 |
T |
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| Q |
102 |
tcaatccttgattccatacaaaacttggttaatttgaaggaacttgcacttgatatcaatcacctttctggatccattccttccac |
187 |
Q |
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| T |
31182714 |
tcaatccctgaatctgtcgaaaacttgattaatgtgaatgagcttgcacttgatcgcaatcgcctttctggaaccattccttccac |
31182799 |
T |
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