View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14111_high_3 (Length: 500)
Name: NF14111_high_3
Description: NF14111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14111_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 16 - 479
Target Start/End: Complemental strand, 9973832 - 9973369
Alignment:
| Q |
16 |
aatatcaacattgtggaaagagtgaaaacgaccaagataatgttaatgagcattataagaattcaagataagataattgagtagtgcacaccaagaagta |
115 |
Q |
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| T |
9973832 |
aatatcaacattgtggaaagagtgaaaacgaccaagataatgttaatgagtattataagaattcaagataagataattgagtagagcacaccaagaagta |
9973733 |
T |
|
| Q |
116 |
tggccaaaaccaaaaatggtaacttgccagcacaagcattgctaataaatcttttatatttttgttctttctgtatctcagtatgatacattacttctag |
215 |
Q |
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| T |
9973732 |
tggccaaaaccaaaaatggtaacttgccagcacaagcattgctaataaatcttttatatttttgttctttctgtatctcagtatgatacattacttctag |
9973633 |
T |
|
| Q |
216 |
tagatgttccaacatatatgatttcatcggcaactgcaaagactaatctttcgtgtcaaataggacaacaagggtagcaaagttcttcccctagagttgg |
315 |
Q |
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| T |
9973632 |
tagatgttccaacatatatgatttcatcggcaactgcaaagactaatctttcgtgtcaaataggacaacaagggtagcaaagttcttcccctagagttgg |
9973533 |
T |
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| Q |
316 |
acattgttgcattcacaagaattggatttgaacagaaaccactagctaagctcaaaaatatttagaccatctcatccaaacattttgagttttctgaacc |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9973532 |
acattgttgcattcacaagaattggatttgaacagaaaccactagctaagctcaaaaatatttagaccatctcatccaaacattttgagttttctgaacc |
9973433 |
T |
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| Q |
416 |
atatttctacaaacttaatgaaagactataatgacaaatttaagaagaaaacaaaacttctgca |
479 |
Q |
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| T |
9973432 |
atatttctacaaacttaatgaaagactataatgacaaatttaagaagaaaacaaaacttctgca |
9973369 |
T |
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