View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14111_high_5 (Length: 375)

Name: NF14111_high_5
Description: NF14111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14111_high_5
NF14111_high_5
[»] scaffold0084 (2 HSPs)
scaffold0084 (20-225)||(13035-13240)
scaffold0084 (330-375)||(12885-12930)
[»] chr4 (23 HSPs)
chr4 (32-225)||(43894197-43894390)
chr4 (42-223)||(2293357-2293539)
chr4 (31-217)||(29687817-29688003)
chr4 (23-199)||(36604697-36604874)
chr4 (55-216)||(38418857-38419018)
chr4 (33-190)||(44302813-44302970)
chr4 (40-218)||(39592128-39592305)
chr4 (40-218)||(11094626-11094802)
chr4 (40-192)||(6616074-6616227)
chr4 (40-218)||(35787896-35788074)
chr4 (40-109)||(86903-86972)
chr4 (40-218)||(47668442-47668613)
chr4 (116-218)||(52980160-52980262)
chr4 (330-375)||(43894495-43894540)
chr4 (337-375)||(10803186-10803224)
chr4 (124-172)||(36604591-36604639)
chr4 (1-65)||(44159146-44159210)
chr4 (40-83)||(41401677-41401720)
chr4 (60-150)||(29663762-29663852)
chr4 (40-150)||(56000387-56000497)
chr4 (335-375)||(2293217-2293257)
chr4 (5-157)||(6140259-6140411)
chr4 (58-150)||(26393033-26393125)
[»] chr3 (16 HSPs)
chr3 (5-222)||(17349936-17350153)
chr3 (5-222)||(39133082-39133299)
chr3 (23-199)||(7483382-7483558)
chr3 (40-216)||(11219530-11219706)
chr3 (33-218)||(32979181-32979366)
chr3 (40-218)||(53808418-53808596)
chr3 (38-218)||(34902832-34903012)
chr3 (40-211)||(47765538-47765710)
chr3 (40-218)||(8371320-8371498)
chr3 (32-189)||(31638210-31638366)
chr3 (40-150)||(12062290-12062400)
chr3 (41-107)||(19622106-19622172)
chr3 (55-96)||(24753462-24753503)
chr3 (124-195)||(7483254-7483325)
chr3 (337-375)||(28776737-28776775)
chr3 (335-375)||(24753269-24753309)
[»] chr5 (6 HSPs)
chr5 (5-218)||(21387702-21387915)
chr5 (31-199)||(18693789-18693956)
chr5 (59-195)||(7426760-7426896)
chr5 (1-150)||(2167421-2167569)
chr5 (56-96)||(7345350-7345390)
chr5 (43-88)||(223329-223374)
[»] chr2 (18 HSPs)
chr2 (2-222)||(14714554-14714774)
chr2 (23-223)||(4512189-4512389)
chr2 (40-217)||(23177774-23177951)
chr2 (40-217)||(23589031-23589208)
chr2 (40-216)||(12852986-12853162)
chr2 (31-199)||(3528121-3528290)
chr2 (23-150)||(26205096-26205223)
chr2 (67-216)||(6708819-6708968)
chr2 (38-218)||(41296292-41296472)
chr2 (59-190)||(7983561-7983692)
chr2 (59-188)||(3532313-3532442)
chr2 (1-187)||(29424481-29424667)
chr2 (30-218)||(21010336-21010524)
chr2 (59-107)||(45047461-45047509)
chr2 (40-156)||(14509309-14509425)
chr2 (40-86)||(7490165-7490211)
chr2 (181-222)||(14714901-14714942)
chr2 (40-88)||(28109837-28109885)
[»] chr1 (20 HSPs)
chr1 (42-223)||(51218798-51218980)
chr1 (40-216)||(26055987-26056163)
chr1 (30-218)||(50678453-50678640)
chr1 (31-218)||(37624408-37624595)
chr1 (31-218)||(30551427-30551614)
chr1 (55-216)||(14764344-14764505)
chr1 (38-218)||(23081964-23082144)
chr1 (40-218)||(9633875-9634053)
chr1 (31-218)||(27689374-27689565)
chr1 (43-218)||(52742814-52742989)
chr1 (38-205)||(22766670-22766838)
chr1 (23-107)||(44977304-44977388)
chr1 (55-107)||(49141445-49141497)
chr1 (337-375)||(17244476-17244514)
chr1 (40-107)||(21277094-21277161)
chr1 (337-375)||(7111266-7111304)
chr1 (1-83)||(36509872-36509954)
chr1 (40-88)||(14169719-14169767)
chr1 (335-375)||(51218664-51218704)
chr1 (55-107)||(51726793-51726845)
[»] scaffold0015 (1 HSPs)
scaffold0015 (23-225)||(207629-207831)
[»] chr8 (30 HSPs)
chr8 (23-225)||(21961906-21962108)
chr8 (23-225)||(44103125-44103329)
chr8 (23-223)||(21670147-21670347)
chr8 (23-222)||(13513503-13513702)
chr8 (23-222)||(13603036-13603235)
chr8 (30-217)||(10052194-10052381)
chr8 (32-218)||(13363416-13363602)
chr8 (56-223)||(39325666-39325834)
chr8 (40-218)||(36756164-36756343)
chr8 (42-189)||(37276110-37276257)
chr8 (40-218)||(117148-117325)
chr8 (40-162)||(7486177-7486299)
chr8 (40-217)||(39546516-39546693)
chr8 (51-218)||(45541595-45541757)
chr8 (41-158)||(21267233-21267351)
chr8 (1-157)||(2421191-2421348)
chr8 (1-157)||(44606200-44606356)
chr8 (40-150)||(13366956-13367066)
chr8 (40-107)||(19913592-19913659)
chr8 (59-107)||(36938800-36938848)
chr8 (335-375)||(44102987-44103027)
chr8 (40-150)||(8095446-8095556)
chr8 (337-375)||(39325534-39325572)
chr8 (40-120)||(12281716-12281796)
chr8 (98-162)||(15116796-15116860)
chr8 (40-88)||(16363780-16363828)
chr8 (40-88)||(20308705-20308753)
chr8 (40-88)||(21095338-21095386)
chr8 (40-88)||(35944008-35944056)
chr8 (146-218)||(41522559-41522631)
[»] scaffold0051 (1 HSPs)
scaffold0051 (33-218)||(39739-39924)
[»] chr7 (14 HSPs)
chr7 (23-222)||(24494883-24495084)
chr7 (40-187)||(14108940-14109087)
chr7 (40-187)||(14418897-14419044)
chr7 (59-206)||(4167570-4167717)
chr7 (94-216)||(35315077-35315199)
chr7 (40-162)||(38406118-38406239)
chr7 (59-199)||(19848691-19848831)
chr7 (59-195)||(18801334-18801470)
chr7 (40-86)||(4857301-4857347)
chr7 (337-375)||(37236085-37236123)
chr7 (337-375)||(35314943-35314981)
chr7 (40-89)||(40930518-40930567)
chr7 (40-88)||(27899182-27899230)
chr7 (40-88)||(46458681-46458729)
[»] scaffold0098 (1 HSPs)
scaffold0098 (55-216)||(41023-41184)
[»] chr6 (8 HSPs)
chr6 (23-205)||(18139337-18139520)
chr6 (136-218)||(34084072-34084154)
chr6 (42-189)||(33801884-33802031)
chr6 (55-190)||(13507038-13507172)
chr6 (40-107)||(14328723-14328790)
chr6 (40-107)||(14421733-14421800)
chr6 (40-107)||(31738463-31738530)
chr6 (60-88)||(30231601-30231629)
[»] scaffold1974 (1 HSPs)
scaffold1974 (40-218)||(466-644)
[»] scaffold1878 (1 HSPs)
scaffold1878 (40-218)||(630-808)
[»] scaffold0290 (1 HSPs)
scaffold0290 (40-155)||(9379-9494)
[»] scaffold0025 (1 HSPs)
scaffold0025 (54-160)||(56595-56702)
[»] scaffold0046 (2 HSPs)
scaffold0046 (184-225)||(23674-23715)
scaffold0046 (330-375)||(23817-23862)
[»] scaffold0122 (1 HSPs)
scaffold0122 (40-150)||(16045-16155)
[»] scaffold0045 (1 HSPs)
scaffold0045 (73-107)||(77128-77162)


Alignment Details
Target: scaffold0084 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 20 - 225
Target Start/End: Complemental strand, 13240 - 13035
Alignment:
Q  20 aactcttctcccgttacttcttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctatt 119  Q
    ||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |    
T  13240 aactcttcttccgttacctcttttggtcctatccattaggttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccatataccctact 13141  T
Q  120 aaaatttttaatcttaaccatttgattttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatctaataa 219  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  13140 aaaatttttaatcttaaccatttgattttttctttaaaagaggactgttgaattttgtagggtctattgtactttattgtcaaccactaacatctaataa 13041  T
Q  220 aatcca 225  Q
    ||||||    
T  13040 aatcca 13035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 330 - 375
Target Start/End: Complemental strand, 12930 - 12885
Alignment:
Q  330 catattctttaatcactacataaccatcattgtcatcttcatctat 375  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  12930 catattctttaatcactacacaaccatcattgtcatcttcatctat 12885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 158; Significance: 5e-84; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 32 - 225
Target Start/End: Original strand, 43894197 - 43894390
Alignment:
Q  32 gttacttcttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaat 131  Q
    ||||| |||||||||| ||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||| ||||||||    
T  43894197 gttacctcttttggtcatatccgttggtttttaacatcaaatgtctgaggtgaaccatatttaaagatggtccacaatatgccctattaaattttttaat 43894296  T
Q  132 cttaaccatttgattttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatctaataaaatcca 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  43894297 cttaaccatttgattttttctttaaaagagggctgttgaattttgtagggtctattgtactttagtgtcaaccactaacatctaataaaatcca 43894390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 42 - 223
Target Start/End: Complemental strand, 2293539 - 2293357
Alignment:
Q  42 ttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaaccatt 141  Q
    |||||||| ||| ||||||||||| ||||||||||| | ||||| ||||||||||||||||||||| |||||| ||||||| |||||||| |||||||||    
T  2293539 ttggtcctctccgttagtttttaaaatcaaatgtctgaagtgaatcatatttaaagatggtccaccatatgccttattaaattttttaattttaaccatt 2293440  T
Q  142 tgattt-tttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatctaataaaatc 223  Q
    |||||| |||| |||||||||| | |||||||  ||| ||||||||||||||||||||| ||||||| ||| |||||||||||    
T  2293439 tgatttatttcattaaaagaggaccgttgaatcatgtggggtctattgtactttactgtgaaccactcacacctaataaaatc 2293357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 31 - 217
Target Start/End: Complemental strand, 29688003 - 29687817
Alignment:
Q  31 cgttacttcttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaa 130  Q
    |||||| |||||||||| | ||| |||||||||||||||||||||||| || ||||||||||||||| ||||||||| ||  || ||||||| |||| |     
T  29688003 cgttacctcttttggtcatctcctttagtttttaacatcaaatgtctacggcgaaccatatttaaaggtggtccaccgtaaaccttattaaatttttaag 29687904  T
Q  131 tcttaaccatttgattttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatctaat 217  Q
    | |||||||||||||||||||||||||||||   ||||| ||  |||| ||||||||||| |||| ||| |||||||| || |||||    
T  29687903 ttttaaccatttgattttttctttaaaagagaattgttggatcatgtaaggtctattgtattttattgtgaaccactaccacctaat 29687817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 23 - 199
Target Start/End: Complemental strand, 36604874 - 36604697
Alignment:
Q  23 tcttctcccgttacttcttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaa- 121  Q
    |||||| ||||||| |||||||||||| ||| ||||||||||| ||||||| |||||| ||||||||||| |||  ||| ||||| |||||| ||||||     
T  36604874 tcttcttccgttacctcttttggtcctctccgttagtttttaatatcaaatatctaagatgaaccatattaaaaagtggcccaccatatgccttattaat 36604775  T
Q  122 aatttttaatcttaaccatttgattttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgt 199  Q
      |||||||| |||||||||||||||||||||||||||||| |  ||||||  ||| ||||||||| |||||||||||    
T  36604774 tttttttaattttaaccatttgattttttctttaaaagaggaccattgaatcatgtggggtctattatactttactgt 36604697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 55 - 216
Target Start/End: Complemental strand, 38419018 - 38418857
Alignment:
Q  55 ttagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaaccatttgattttttcttt 154  Q
    |||||||||||||| ||| || |||| ||||||||||||| || ||||||||| |||||| || |||| ||||| || ||||||||||||||||||||||    
T  38419018 ttagtttttaacattaaacgtttaagatgaaccatatttataggtggtccaccatatgccttactaaatttttttattttaaccatttgattttttcttt 38418919  T
Q  155 aaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatctaa 216  Q
    |||| |  |||||| |||  ||||||||||||||||||||||| | ||||||||||| ||||    
T  38418918 aaaaaatagctgttaaatcatgtagggtctattgtactttactatgaaccactaacacctaa 38418857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 33 - 190
Target Start/End: Original strand, 44302813 - 44302970
Alignment:
Q  33 ttacttcttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatc 132  Q
    |||| |||||||||||| ||| |||||||||||||| ||| | ||||||||||| |||||||||| |||| |||| ||  || ||||||| ||||||||     
T  44302813 ttacctcttttggtcctctccgttagtttttaacattaaaagactaaggtgaactatatttaaaggtggttcaccatagaccgtattaaattttttaatt 44302912  T
Q  133 ttaaccatttgattttttctttaaaagagggctgttgaattttgtagggtctattgta 190  Q
    ||||||||||||||  |||||||||||| |  ||||||||| |||||| | |||||||    
T  44302913 ttaaccatttgattgattctttaaaagatgattgttgaattatgtaggatatattgta 44302970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 40 - 218
Target Start/End: Complemental strand, 39592305 - 39592128
Alignment:
Q  40 ttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaacca 139  Q
    ||||||| || ||| ||| |||||||||||||||||||||||||| |||| ||||||| ||||||| | ||| || ||||||| |||| ||| ||||||     
T  39592305 ttttggttctctccgttaatttttaacatcaaatgtctaaggtgagccatgtttaaaggtggtccatcatataccttattaaatttttaaattttaacct 39592206  T
Q  140 tttgattttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatctaata 218  Q
    ||||||||||||| |||||||||  ||||| ||  |||| |||||||| || |||| ||| |||||| |||| ||||||    
T  39592205 tttgattttttctataaaagaggattgttggatcatgta-ggtctattatattttattgtaaaccaccaacacctaata 39592128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 40 - 218
Target Start/End: Original strand, 11094626 - 11094802
Alignment:
Q  40 ttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaacca 139  Q
    |||||||||| | | ||||||||||||||||||||||||||||  ||||| ||||||  |||| |||| ||  || ||||||| |||| ||| ||||||     
T  11094626 ttttggtcctcttcgttagtttttaacatcaaatgtctaaggt--accatgtttaaatgtggttcaccatagaccttattaaatttttaaatattaacct 11094723  T
Q  140 tttgattttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatctaata 218  Q
    | |||||||||||||||||||||  ||||| ||  |||| ||||||||||| |||| ||| |||||| |||| ||||||    
T  11094724 tgtgattttttctttaaaagaggattgttggatcatgtaaggtctattgtattttattgtaaaccaccaacacctaata 11094802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 40 - 192
Target Start/End: Complemental strand, 6616227 - 6616074
Alignment:
Q  40 ttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaacca 139  Q
    |||||||||| ||| |||||||||||||||||||||| ||||||||| ||  |||||||| ||||||  ||  || ||||||| |||| ||| ||||||     
T  6616227 ttttggtcctctcctttagtttttaacatcaaatgtcaaaggtgaacaatgattaaagatagtccactatagaccttattaaatttttaaattttaacct 6616128  T
Q  140 tttgattt-tttctttaaaagagggctgttgaattttgtagggtctattgtact 192  Q
    |||||||| |||||||||||||||  ||||  ||  || |||||||||||||||    
T  6616127 tttgatttatttctttaaaagaggattgttcgatcatgcagggtctattgtact 6616074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 40 - 218
Target Start/End: Original strand, 35787896 - 35788074
Alignment:
Q  40 ttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaacca 139  Q
    |||||||||| ||| |||||||||||||||||||||||||||| || ||| ||||||| ||||||||| ||  |  ||||||| |||| ||| ||||||     
T  35787896 ttttggtcctctccgttagtttttaacatcaaatgtctaaggtaaatcatgtttaaaggtggtccaccatagactttattaaatttttaaattttaacct 35787995  T
Q  140 tttgattttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatctaata 218  Q
    ||| | |||||| |||||||| |  ||||| ||  || ||||||||||| | |||| ||| || ||| |||| ||||||    
T  35787996 tttaaatttttcattaaaagatgattgttggatcatgcagggtctattgcattttattgtaaatcaccaacacctaata 35788074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 40 - 109
Target Start/End: Original strand, 86903 - 86972
Alignment:
Q  40 ttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccacctt 109  Q
    |||||||| | ||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  86903 ttttggtcttctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtggtccacctt 86972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 40 - 218
Target Start/End: Complemental strand, 47668613 - 47668442
Alignment:
Q  40 ttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaacca 139  Q
    |||||||||| ||  ||||||||||||||||||| |||||||| ||||||  |||||||||||||||| || | |||       |||| ||| ||||||     
T  47668613 ttttggtcctctctgttagtttttaacatcaaatatctaaggtaaaccatggttaaagatggtccaccata-gacct-------ttttaaattttaacct 47668522  T
Q  140 tttga-ttttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatctaata 218  Q
    ||||| ||||||||||||||||||  ||||  ||  |||||||||||||||| |||| ||| |||||||||||| |||||    
T  47668521 tttgatttttttctttaaaagaggattgttcgatcatgtagggtctattgtattttagtgtgaaccactaacatttaata 47668442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 218
Target Start/End: Original strand, 52980160 - 52980262
Alignment:
Q  116 tattaaaatttttaatcttaaccatttgattttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatcta 215  Q
    ||||||| |||| ||| |||||| ||| |||||||||||||||||||  ||||| ||| ||||| |||||||||| |||| ||| |||||| |||| |||    
T  52980160 tattaaatttttaaattttaaccttttaattttttctttaaaagaggattgttggattatgtagagtctattgtattttattgtaaaccaccaacaccta 52980259  T
Q  216 ata 218  Q
    |||    
T  52980260 ata 52980262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 330 - 375
Target Start/End: Original strand, 43894495 - 43894540
Alignment:
Q  330 catattctttaatcactacataaccatcattgtcatcttcatctat 375  Q
    |||||||||||||||||||| || ||||||||||||||||||||||    
T  43894495 catattctttaatcactacacaatcatcattgtcatcttcatctat 43894540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 337 - 375
Target Start/End: Original strand, 10803186 - 10803224
Alignment:
Q  337 tttaatcactacataaccatcattgtcatcttcatctat 375  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  10803186 tttaatcactacatcaccatcattgtcatcttcatctat 10803224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 36604639 - 36604591
Alignment:
Q  124 tttttaatcttaaccatttgattttttctttaaaagagggctgttgaat 172  Q
    |||||||| ||||||||||||||||||| |||||||||| | |||||||    
T  36604639 tttttaattttaaccatttgattttttcgttaaaagaggaccgttgaat 36604591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 44159146 - 44159210
Alignment:
Q  1 tgtttcaatttggttcctcaactcttctcccgttacttcttttggtcctatccattagtttttaa 65  Q
    ||||||||||||||||| |||||||||| |||||  || |||||||| | ||| |||||||||||    
T  44159146 tgtttcaatttggttccacaactcttctgccgtttattattttggtcatctccgttagtttttaa 44159210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 83
Target Start/End: Complemental strand, 41401720 - 41401677
Alignment:
Q  40 ttttggtcctatccattagtttttaacatcaaatgtctaaggtg 83  Q
    ||||| |||| ||||||| |||||||||||||||||||||||||    
T  41401720 ttttgatcctctccattaatttttaacatcaaatgtctaaggtg 41401677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 150
Target Start/End: Original strand, 29663762 - 29663852
Alignment:
Q  60 ttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaaccatttgatttttt 150  Q
    ||||||||| |||||||||||||||||||   ||| || ||||||||| ||  || || ||| ||||||||| ||||||| ||||| ||||    
T  29663762 ttttaacattaaatgtctaaggtgaaccaacattataggtggtccaccataaaccttactaagatttttaattttaaccacttgatatttt 29663852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 150
Target Start/End: Original strand, 56000387 - 56000497
Alignment:
Q  40 ttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaacca 139  Q
    |||||||| | ||||| |||||||||||  |||||||||||||| ||||   ||| || ||||||||| ||  || || |||  |||||||| |||||||    
T  56000387 ttttggtcttttccatcagtttttaacactaaatgtctaaggtggaccaacattataggtggtccaccgtagaccttactaagttttttaattttaacca 56000486  T
Q  140 tttgatttttt 150  Q
    |||||| ||||    
T  56000487 tttgatatttt 56000497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 335 - 375
Target Start/End: Complemental strand, 2293257 - 2293217
Alignment:
Q  335 tctttaatcactacataaccatcattgtcatcttcatctat 375  Q
    ||||||||||  ||| |||||||||||||||||||||||||    
T  2293257 tctttaatcatcacacaaccatcattgtcatcttcatctat 2293217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 157
Target Start/End: Complemental strand, 6140411 - 6140259
Alignment:
Q  5 tcaatttggttcctcaactcttctcccgttacttcttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtcc 104  Q
    |||||||||||||  |||||||||  ||||   | |||||||| | ||| |||||||||||| | |||| ||||||||||||||  |||| || | ||||    
T  6140411 tcaatttggttccataactcttctgtcgtttactattttggtcatttccgttagtttttaaccttaaatatctaaggtgaaccaactttataggtagtcc 6140312  T
Q  105 accttatgccctattaaaatttttaatcttaaccatttgattttttctttaaa 157  Q
    ||| ||  || |||||||  ||||| | |||||  |||||| |||| ||||||    
T  6140311 accatagaccttattaaatcttttatttttaacagtttgatcttttttttaaa 6140259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 150
Target Start/End: Complemental strand, 26393125 - 26393033
Alignment:
Q  58 gtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaaccatttgatttttt 150  Q
    ||||||||||  |||||||||||||||||||   ||| || ||||||||| ||  || || |||  |||||||| ||||||||||||| ||||    
T  26393125 gtttttaacactaaatgtctaaggtgaaccaacattataggtggtccaccatagaccttactaagttttttaattttaaccatttgatatttt 26393033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 130; Significance: 3e-67; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 17350153 - 17349936
Alignment:
Q  5 tcaatttggttcctcaactcttctcccgttacttcttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtcc 104  Q
    |||||||||| ||| |  |||||||| ||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  17350153 tcaatttggtcccttatgtcttctcctgttacctcttttggtcctctccgttagtttttaacatcaaatgtctaaggtgaaccatatttaaaggtggtcc 17350054  T
Q  105 accttatgccctattaaaatttttaatcttaaccatttgattttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaacc 204  Q
    ||| |||||| || |||| |||||||| |||||||||||||||||||||||||||||| | |||||||  |||||||||||||| |||||| ||| ||||    
T  17350053 accatatgccttactaaattttttaattttaaccatttgattttttctttaaaagaggaccgttgaatcatgtagggtctattgaactttattgtgaacc 17349954  T
Q  205 actaacatctaataaaat 222  Q
    ||||||| ||||||||||    
T  17349953 actaacacctaataaaat 17349936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 39133082 - 39133299
Alignment:
Q  5 tcaatttggttcctcaactcttctcccgttacttcttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtcc 104  Q
    |||||||||| ||| |  ||||||| |||||| |||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39133082 tcaatttggtcccttatgtcttctctcgttacctcttttggtcctctctgttagtttttaacatcaaatgtctaaggtgaaccatatttaaaggtggtcc 39133181  T
Q  105 accttatgccctattaaaatttttaatcttaaccatttgattttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaacc 204  Q
    ||| |||||| || |||| |||||||| |||||||||||||||||||||||||||||| | |||||||  |||| |||||||||||||||| ||| ||||    
T  39133182 accatatgccttactaaattttttaattttaaccatttgattttttctttaaaagaggacagttgaatcatgtaaggtctattgtactttattgtgaacc 39133281  T
Q  205 actaacatctaataaaat 222  Q
    ||||||| ||||||||||    
T  39133282 actaacacctaataaaat 39133299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 23 - 199
Target Start/End: Complemental strand, 7483558 - 7483382
Alignment:
Q  23 tcttctcccgttacttcttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaa 122  Q
    |||||| ||||||| |||||||||| | ||| ||||||||||||||||||| |||||||||||||||||| |||  ||| ||||| |||||| ||||||     
T  7483558 tcttcttccgttacctcttttggtcatctccgttagtttttaacatcaaatatctaaggtgaaccatattaaaaagtggcccaccatatgccttattaat 7483459  T
Q  123 atttttaatcttaaccatttgattttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgt 199  Q
     |||||||| |||||||||||||||||||||||||||||| | |||||||  ||| ||||||||| |||||||||||    
T  7483458 ttttttaattttaaccatttgattttttctttaaaagaggaccgttgaatcatgtggggtctattatactttactgt 7483382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 40 - 216
Target Start/End: Original strand, 11219530 - 11219706
Alignment:
Q  40 ttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaacca 139  Q
    |||||||| | ||| |||| |||||||||||||  ||||||||||||||||||||||| |||| |||| ||   | ||||||| |||||||| |||||||    
T  11219530 ttttggtcatctccgttagattttaacatcaaaattctaaggtgaaccatatttaaaggtggttcaccatagatcgtattaaattttttaattttaacca 11219629  T
Q  140 tttgattttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatctaa 216  Q
    ||||||||||||||||||||||| | |||||||| |||||||||||||||||||| |||| ||||||||||| ||||    
T  11219630 tttgattttttctttaaaagaggaccgttgaattatgtagggtctattgtactttcctgtgaaccactaacacctaa 11219706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 33 - 218
Target Start/End: Original strand, 32979181 - 32979366
Alignment:
Q  33 ttacttcttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatc 132  Q
    |||| |||||||||||| ||| |||||||||||||| ||| | ||||||||||| |||||||||| |||| |||| ||  || ||||||| ||||||||     
T  32979181 ttacctcttttggtcctctccgttagtttttaacattaaaagactaaggtgaactatatttaaaggtggttcaccatagaccgtattaaattttttaatt 32979280  T
Q  133 ttaaccatttgattttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatctaata 218  Q
    ||||||||||||||  |||||||||||| | |||||||||| |||||||| |||||||||||| ||| || |||||||| ||||||    
T  32979281 ttaaccatttgattgattctttaaaagatgactgttgaattatgtagggtatattgtactttattgtaaatcactaacacctaata 32979366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 40 - 218
Target Start/End: Original strand, 53808418 - 53808596
Alignment:
Q  40 ttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaacca 139  Q
    |||||||| | ||||||||||||||||||||||| ||||||||||| ||||| ||||| ||||||||| ||  || ||||||| |||| ||| ||||||     
T  53808418 ttttggtcatctccattagtttttaacatcaaatttctaaggtgaatcatatctaaaggtggtccaccataaaccttattaaatttttaaattttaaccc 53808517  T
Q  140 tttgattttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatctaata 218  Q
    ||||||||||||||||||||||    |||| ||  |||||| ||||||||| |||||||| ||||||||||| ||||||    
T  53808518 tttgattttttctttaaaagagaatcgttggatcatgtaggatctattgtattttactgtgaaccactaacacctaata 53808596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 38 - 218
Target Start/End: Complemental strand, 34903012 - 34902832
Alignment:
Q  38 tcttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaac 137  Q
    |||||||||| | ||| ||||||||||||| ||||||||||| ||||||||||||||||| |||| |||| |   || || |||| |||||||| |||||    
T  34903012 tcttttggtcatctccgttagtttttaacaccaaatgtctaaagtgaaccatatttaaaggtggtgcaccatggaccttagtaaattttttaattttaac 34902913  T
Q  138 catttgattttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatctaata 218  Q
    | |||||||||||| ||||||||||  ||||| ||  |||||||| ||||||  |||| ||| ||||||||||| ||||||    
T  34902912 cttttgattttttcattaaaagaggattgttggatcatgtagggtttattgttttttagtgtgaaccactaacacctaata 34902832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 40 - 211
Target Start/End: Original strand, 47765538 - 47765710
Alignment:
Q  40 ttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaacca 139  Q
    |||||||| | ||| ||||||||||||||||||| ||| |||||||||||  |||||||||||||||| ||  || |||| || |||| ||| ||||||     
T  47765538 ttttggtcatctccgttagtttttaacatcaaatatcttaggtgaaccattgttaaagatggtccaccatagaccttattgaatttttaaattttaacct 47765637  T
Q  140 tttga-ttttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaaca 211  Q
    ||||| ||||||||||||||||||  ||||| ||  |||||||||||||||| ||||  || |||||||||||    
T  47765638 tttgatttttttctttaaaagaggattgttggatcatgtagggtctattgtattttagcgtgaaccactaaca 47765710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 40 - 218
Target Start/End: Original strand, 8371320 - 8371498
Alignment:
Q  40 ttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaacca 139  Q
    |||||||||| ||| ||||||||||||||||||| ||||| | ||||| || ||| || ||||||||| |   || || |||| |||||||| ||||||     
T  8371320 ttttggtcctctccgttagtttttaacatcaaatatctaaagcgaaccgtacttagaggtggtccaccatggaccttagtaaattttttaattttaaccc 8371419  T
Q  140 tttgattttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatctaata 218  Q
    |||||||||||||||||||||||  ||||| ||  | ||  |||||||||| | || ||| ||||||||||| ||||||    
T  8371420 tttgattttttctttaaaagaggattgttggatcatatatagtctattgtattctattgtaaaccactaacacctaata 8371498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 32 - 189
Target Start/End: Original strand, 31638210 - 31638366
Alignment:
Q  32 gttacttcttttggtcctatccattagtttttaacatcaaatgt--ctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaattttta 129  Q
    ||||| ||||||| |||| |||  |||||||||||||||||| |  |||||||||||||||||||||| ||||| ||| || ||| || |||| ||||||    
T  31638210 gttacctcttttgatcctctccgctagtttttaacatcaaatatatctaaggtgaaccatatttaaaggtggtctaccatacgccttactaaatttttta 31638309  T
Q  130 atcttaaccatttgattttttctttaaaagagggctgttgaattttgtagggtctattgt 189  Q
    || |||    ||||||||||||||||||||| | | |||||||  ||||||  |||||||    
T  31638310 atttta---ctttgattttttctttaaaagaagacagttgaatcatgtaggacctattgt 31638366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 150
Target Start/End: Complemental strand, 12062400 - 12062290
Alignment:
Q  40 ttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaacca 139  Q
    |||||||| | |||||||||||||||| | |||||||||||||||||||  |||| || || |||||| ||| || |||||||  || || | |||||||    
T  12062400 ttttggtcatttccattagtttttaaccttaaatgtctaaggtgaaccaactttataggtgatccaccatataccttattaaatcttgtatttttaacca 12062301  T
Q  140 tttgatttttt 150  Q
    |||||||||||    
T  12062300 tttgatttttt 12062290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 19622106 - 19622172
Alignment:
Q  41 tttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccacc 107  Q
    ||||||||| ||| |||||||| |||||||||||| |||||||||| || ||||||| |||||||||    
T  19622106 tttggtcctctccgttagttttcaacatcaaatgtttaaggtgaactatgtttaaaggtggtccacc 19622172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 96
Target Start/End: Complemental strand, 24753503 - 24753462
Alignment:
Q  55 ttagtttttaacatcaaatgtctaaggtgaaccatatttaaa 96  Q
    |||||||||||| |||||||||||||||||||||| ||||||    
T  24753503 ttagtttttaacttcaaatgtctaaggtgaaccatctttaaa 24753462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 124 - 195
Target Start/End: Complemental strand, 7483325 - 7483254
Alignment:
Q  124 tttttaatcttaaccatttgattttttctttaaaagagggctgttgaattttgtagggtctattgtacttta 195  Q
    |||||||| ||| ||||||||||||||  |||||||||| | |||||||  ||| ||||||||| |||||||    
T  7483325 tttttaattttatccatttgatttttttgttaaaagaggaccgttgaatcatgtggggtctattatacttta 7483254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 337 - 375
Target Start/End: Original strand, 28776737 - 28776775
Alignment:
Q  337 tttaatcactacataaccatcattgtcatcttcatctat 375  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  28776737 tttaatcactacaccaccatcattgtcatcttcatctat 28776775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 335 - 375
Target Start/End: Complemental strand, 24753309 - 24753269
Alignment:
Q  335 tctttaatcactacataaccatcattgtcatcttcatctat 375  Q
    ||||||||||| ||| ||| |||||||||||||||||||||    
T  24753309 tctttaatcaccacacaactatcattgtcatcttcatctat 24753269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 114; Significance: 1e-57; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 5 - 218
Target Start/End: Original strand, 21387702 - 21387915
Alignment:
Q  5 tcaatttggttcctcaactcttctcccgttacttcttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtcc 104  Q
    |||||||||| ||  || |||||| ||||||| |||||||||||| ||  ||||||||||||||||||  ||||||||||| ||||||||||| |||| |    
T  21387702 tcaatttggtcccataaatcttctgccgttacctcttttggtcctgtctgttagtttttaacatcaaaactctaaggtgaaacatatttaaaggtggttc 21387801  T
Q  105 accttatgccctattaaaatttttaatcttaaccatttgattttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaacc 204  Q
    ||| || ||| ||||||| |||||||| |||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||| |||     
T  21387802 accataggccgtattaaattttttaattttaaccatttgattttttctttaaaagaggaccgttgaattatgtagggtctattgtactttactgtaaacg 21387901  T
Q  205 actaacatctaata 218  Q
    ||||||| ||||||    
T  21387902 actaacacctaata 21387915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 31 - 199
Target Start/End: Original strand, 18693789 - 18693956
Alignment:
Q  31 cgttacttcttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaa 130  Q
    |||||| |||||||||||| ||  ||||||||||||||||||  ||||||||||||||||| ||||| |||| |||| ||  || ||||||| |||||||    
T  18693789 cgttacctcttttggtcctctctgttagtttttaacatcaaaactctaaggtgaaccatatataaaggtggttcaccatagaccgtattaaattttttaa 18693888  T
Q  131 tcttaaccatttgattttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgt 199  Q
    | |||| ||||||| ||||||||||||||||| | |||||||| ||||  |||||||||||||||||||    
T  18693889 ttttaatcatttga-tttttctttaaaagaggaccgttgaattatgtatagtctattgtactttactgt 18693956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 59 - 195
Target Start/End: Original strand, 7426760 - 7426896
Alignment:
Q  59 tttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaaccatttgattttttctttaaaa 158  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||| ||  || ||||||| |||| ||| | |||| |||||||||||||||||||    
T  7426760 tttttaacatcaaatgtctaaggtgaatcatatttaaaggtggtccaccatagaccttattaaatttttaaatttcaaccttttgattttttctttaaaa 7426859  T
Q  159 gagggctgttgaattttgtagggtctattgtacttta 195  Q
    ||||  ||||| ||  ||||||||||| |||| ||||    
T  7426860 gaggtttgttggatgatgtagggtctactgtatttta 7426896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 2167569 - 2167421
Alignment:
Q  1 tgtttcaatttggttcctcaactcttctcccgttacttcttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatg 100  Q
    |||||||||||||| ||  || |||||| |||||  || |||||||| | ||  |||||||||||| | |||||||||||||||||||  |||| |||||    
T  2167569 tgtttcaatttggtcccataaatcttctgccgtttattattttggtc-tctctgttagtttttaaccttaaatgtctaaggtgaaccaactttatagatg 2167471  T
Q  101 gtccaccttatgccctattaaaatttttaatcttaaccatttgatttttt 150  Q
    ||||||| ||  || |||||||  ||||| | |||||| |||||||||||    
T  2167470 gtccaccatagaccttattaaatcttttattattaaccgtttgatttttt 2167421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 7345390 - 7345350
Alignment:
Q  56 tagtttttaacatcaaatgtctaaggtgaaccatatttaaa 96  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  7345390 tagtttttaacatcaaaactctaaggtgaaccatatttaaa 7345350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 223329 - 223374
Alignment:
Q  43 tggtcctatccattagtttttaacatcaaatgtctaaggtgaacca 88  Q
    ||||||| |||||||||||||||  | |||||||||||||||||||    
T  223329 tggtcctttccattagtttttaatcttaaatgtctaaggtgaacca 223374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 9e-55; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 14714554 - 14714774
Alignment:
Q  2 gtttcaatttggttcctcaactcttctcccgttacttcttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatgg 101  Q
    ||||||| |||||| || |  |||||| |||||||  ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||    
T  14714554 gtttcaaattggttgcttatgtcttcttccgttaccacttttggtcctctccgttagtttttaacatcaaatgtctaaggtgaaccatatttaaaggtgg 14714653  T
Q  102 tccaccttatgccctattaaaatttttaatcttaaccatttgattttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtca 201  Q
    |||||| || ||| ||||||  ||||||||   |||||||||||||||||||||||||| | | |||||||  ||||| |||||||||| |||||||| |    
T  14714654 tccaccatacgccttattaatttttttaattgcaaccatttgattttttctttaaaagatgaccgttgaatcatgtagagtctattgtattttactgtga 14714753  T
Q  202 accactaacatctaataaaat 222  Q
    |||||||||| ||||||||||    
T  14714754 accactaacacctaataaaat 14714774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 23 - 223
Target Start/End: Original strand, 4512189 - 4512389
Alignment:
Q  23 tcttctcccgttacttcttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaa 122  Q
    |||||| ||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||  ||||||||| |||||| ||||||     
T  4512189 tcttcttccgttacctcttttggtcctctccattagtttttaacatcaaatatctaaggtgaaccatattaaaaagtggtccaccatatgccttattaat 4512288  T
Q  123 atttttaatcttaaccatttgattttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatctaataaaat 222  Q
     |||||||| || ||||||||||||||||||||||||| | | |||||||  ||| ||||||||| ||||||||||| ||||| | ||| ||||||||||    
T  4512289 ttttttaattttgaccatttgattttttctttaaaagatgaccgttgaatcatgtggggtctattatactttactgtgaaccattcacacctaataaaat 4512388  T
Q  223 c 223  Q
    |    
T  4512389 c 4512389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 40 - 217
Target Start/End: Original strand, 23177774 - 23177951
Alignment:
Q  40 ttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaacca 139  Q
    |||||||||| ||| |||||||||||||| |||  |||||| ||||||||||||||||||||| |||| ||   | ||||||| ||| |||| |||||||    
T  23177774 ttttggtcctctccgttagtttttaacataaaaaatctaagatgaaccatatttaaagatggttcaccgtagatcttattaaattttctaattttaacca 23177873  T
Q  140 tttgattttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatctaat 217  Q
    |||||||||||||||||| | || | |||||||| ||| ||||||||||||||||||||| ||||||||||| |||||    
T  23177874 tttgattttttctttaaatgcggaccgttgaattatgtcgggtctattgtactttactgtgaaccactaacacctaat 23177951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 40 - 217
Target Start/End: Original strand, 23589031 - 23589208
Alignment:
Q  40 ttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaacca 139  Q
    |||||||||| ||| |||||||||||||| |||  |||||| ||||||||||||||||||||| |||| ||   | ||||||| ||| |||| |||||||    
T  23589031 ttttggtcctctccgttagtttttaacataaaaaatctaagatgaaccatatttaaagatggttcaccgtagatcttattaaattttctaattttaacca 23589130  T
Q  140 tttgattttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatctaat 217  Q
    |||||||||||||||||| | || | |||||||| ||| ||||||||||||||||||||| ||||||||||| |||||    
T  23589131 tttgattttttctttaaatgcggaccgttgaattatgtcgggtctattgtactttactgtgaaccactaacacctaat 23589208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 40 - 216
Target Start/End: Original strand, 12852986 - 12853162
Alignment:
Q  40 ttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaacca 139  Q
    |||||||| | ||| |||| |||||||||||||  ||||||||||||||||||||||| |||| |||| ||  || ||||||| |||| ||| |||||||    
T  12852986 ttttggtcatctccgttagattttaacatcaaaaatctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaatttttgaattttaacca 12853085  T
Q  140 tttgattttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatctaa 216  Q
    |||||||| |||||||||||||| |  ||||||| ||||| |||||||||||||| |||||||||||||||| ||||    
T  12853086 tttgatttattctttaaaagaggaccattgaattatgtagagtctattgtactttcctgtcaaccactaacacctaa 12853162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 31 - 199
Target Start/End: Complemental strand, 3528290 - 3528121
Alignment:
Q  31 cgttacttcttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaa 130  Q
    ||||||||||| ||||| | || |||||||||||| | |||| |||||||||||||||||||||||| |||| |||| ||  || ||||||| |||||||    
T  3528290 cgttacttcttctggtcttctctattagtttttaatagcaaaagtctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaattttttaa 3528191  T
Q  131 tcttaaccatttgatttttt-ctttaaaagagggctgttgaattttgtagggtctattgtactttactgt 199  Q
    | ||||||| |||||||||| |||||||||||| |  ||||||| |||||||| ||||||| ||||||||    
T  3528190 ttttaaccagttgattttttcctttaaaagaggaccattgaattatgtagggtgtattgtattttactgt 3528121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 23 - 150
Target Start/End: Original strand, 26205096 - 26205223
Alignment:
Q  23 tcttctcccgttacttcttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaa 122  Q
    |||||| ||||||| || ||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||  ||||||||| |||||| ||||||     
T  26205096 tcttcttccgttacctcgtttggtcctctccgttagtttttaacatcaaatgtctaaggtgaaccatacttaaaagtggtccaccatatgccttattaat 26205195  T
Q  123 atttttaatcttaaccatttgatttttt 150  Q
     |||| ||| ||||||||||||||||||    
T  26205196 tttttaaattttaaccatttgatttttt 26205223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 67 - 216
Target Start/End: Complemental strand, 6708968 - 6708819
Alignment:
Q  67 atcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaaccatttgattttttctttaaaagagggctg 166  Q
    |||||| |||| ||||||||||||||||||| |||| |||| ||  || ||||||| ||| |||| ||||||||||||||| |||||||||| ||| | |    
T  6708968 atcaaaagtctgaggtgaaccatatttaaaggtggttcaccataaaccgtattaaattttctaattttaaccatttgatttattctttaaaaaaggaccg 6708869  T
Q  167 ttgaattttgtagggtctattgtactttactgtcaaccactaacatctaa 216  Q
    ||||||| |||||||||||||| ||||| |||| ||||||||||| ||||    
T  6708868 ttgaattatgtagggtctattgcactttcctgtgaaccactaacacctaa 6708819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 38 - 218
Target Start/End: Complemental strand, 41296472 - 41296292
Alignment:
Q  38 tcttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaac 137  Q
    |||||||||||| ||| ||||||||||||| ||||||||||| ||||| |||||| |||| |||| |||| |    | || |||| |||||||| |||||    
T  41296472 tcttttggtcctctccgttagtttttaacaccaaatgtctaaagtgaatcatattaaaaggtggtgcaccatggatcttagtaaattttttaatattaac 41296373  T
Q  138 catttgattttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatctaata 218  Q
    | |||||||||||||||||||||||  ||||  ||  |||||| ||||||||| |||| ||| || |||||||| ||||||    
T  41296372 cttttgattttttctttaaaagaggattgttcgatcatgtaggatctattgtattttagtgtgaatcactaacacctaata 41296292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 59 - 190
Target Start/End: Complemental strand, 7983692 - 7983561
Alignment:
Q  59 tttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaaccatttgattttttctttaaaa 158  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||| ||   | ||||||| |||| ||| | | || |||||||||||||||||||    
T  7983692 tttttaacatcaaatgtctaaggtgaaccatgtttaaaggtggtccaccatagatcttattaaatttttaaatttcatccttttgattttttctttaaaa 7983593  T
Q  159 gagggctgttgaattttgtagggtctattgta 190  Q
    ||||  ||||| ||  ||||||||||||||||    
T  7983592 gaggtttgttggatgatgtagggtctattgta 7983561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 59 - 188
Target Start/End: Original strand, 3532313 - 3532442
Alignment:
Q  59 tttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaaccatttgattttttctttaaaa 158  Q
    |||||||||| |||||| ||||||||||||||||||||| ||||||||| |||||  || |||||  ||| || ||||||||||||||||||||||||||    
T  3532313 tttttaacattaaatgtttaaggtgaaccatatttaaaggtggtccaccatatgcattactaaaaaattttattttaaccatttgattttttctttaaaa 3532412  T
Q  159 gagggctgttgaattttgtagggtctattg 188  Q
     |  | |||| |||  ||||||||||||||    
T  3532413 aatagttgttaaatcatgtagggtctattg 3532442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 29424667 - 29424481
Alignment:
Q  1 tgtttcaatttggttcctcaactcttctcccgttacttcttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatg 100  Q
    |||||||||||||| |||  | | |||| |||||  || |||||||||| ||  ||||||  |||||||||||||||||| |||||||| ||||||| ||    
T  29424667 tgtttcaatttggtcccttgaatattctgccgtttattgttttggtcctctctgttagttactaacatcaaatgtctaagatgaaccatgtttaaaggtg 29424568  T
Q  101 gtccaccttatgccctattaaaatttttaatcttaaccatttgattttttctttaaaagagggctgttgaattttgtagggtctatt 187  Q
    ||||| | ||  || ||||||| |||| ||| |||||| |||||||||| ||||||||||||  ||||| ||  |||| ||||||||    
T  29424567 gtccatcatagaccttattaaatttttaaattttaaccttttgatttttcctttaaaagaggattgttggatcatgtaaggtctatt 29424481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 218
Target Start/End: Complemental strand, 21010524 - 21010336
Alignment:
Q  30 ccgttacttcttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaattttta 129  Q
    ||||||| | |||||||||| ||  |||||| |||||||||||||||||| ||||||| ||||||||| ||||| | | ||  || ||||||| |||| |    
T  21010524 ccgttacattttttggtcctctctgttagttgttaacatcaaatgtctaatgtgaaccgtatttaaaggtggtctatcataaaccttattaaatttttaa 21010425  T
Q  130 atcttaaccatttgattttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatctaata 218  Q
    || |||||| ||| |||||||||| ||||||    ||||| ||   ||||||||||||||| |||| | | ||||||||||| ||||||    
T  21010424 attttaaccctttaattttttcttaaaaagataattgttggatcaggtagggtctattgtattttattatgaaccactaacacctaata 21010336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 45047461 - 45047509
Alignment:
Q  59 tttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccacc 107  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  45047461 tttttaatatcaaatgtctaaggtgaaccatatttaaaggtggtccacc 45047509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 156
Target Start/End: Original strand, 14509309 - 14509425
Alignment:
Q  40 ttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaacca 139  Q
    |||||||||| ||| ||| |||||||| | ||||||||||||| |||||  |||| || ||||||||| ||  || |||||||  ||||| | ||||||     
T  14509309 ttttggtcctctccgttaatttttaaccttaaatgtctaaggtaaaccaactttataggtggtccaccatagaccttattaaaccttttatttttaaccg 14509408  T
Q  140 tttgattttttctttaa 156  Q
    |||||| |||| |||||    
T  14509409 tttgatattttttttaa 14509425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 7490211 - 7490165
Alignment:
Q  40 ttttggtcctatccattagtttttaacatcaaatgtctaaggtgaac 86  Q
    |||||||| ||||| |||||||||||| | |||||||||||||||||    
T  7490211 ttttggtcttatccgttagtttttaaccttaaatgtctaaggtgaac 7490165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 14714901 - 14714942
Alignment:
Q  181 gtctattgtactttactgtcaaccactaacatctaataaaat 222  Q
    |||||||||| |||||||| ||||||||||| ||||||||||    
T  14714901 gtctattgtattttactgtgaaccactaacacctaataaaat 14714942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 28109885 - 28109837
Alignment:
Q  40 ttttggtcctatccattagtttttaacatcaaatgtctaaggtgaacca 88  Q
    |||||||||| ||| ||| |||||||| | |||||||||||||||||||    
T  28109885 ttttggtcctctccgttattttttaaccttaaatgtctaaggtgaacca 28109837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 42 - 223
Target Start/End: Complemental strand, 51218980 - 51218798
Alignment:
Q  42 ttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaaccatt 141  Q
    |||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||| |||||||| |||| ||||    
T  51218980 ttggtcctctccgttagtttttaacatcaaatgtctaaagtgaaccatatttaaagatggtccaccatatgccttattaaattttttaattttaatcatt 51218881  T
Q  142 tgattt-tttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatctaataaaatc 223  Q
    |||||| |||| |||||||||| |||||||||  ||| |||||||||||||||| |||| ||||||| ||| |||||||||||    
T  51218880 tgatttatttcattaaaagaggactgttgaatcatgtggggtctattgtactttcctgtgaaccactcacacctaataaaatc 51218798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 40 - 216
Target Start/End: Complemental strand, 26056163 - 26055987
Alignment:
Q  40 ttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaacca 139  Q
    |||||||||| ||| |||| ||||||||||||| |||||| ||||||||||||||||| |||| |||| || ||| ||||||| |||||||| |||||||    
T  26056163 ttttggtcctctccgttagattttaacatcaaaagtctaaagtgaaccatatttaaaggtggttcaccataggccgtattaaattttttaattttaacca 26056064  T
Q  140 tttgattttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatctaa 216  Q
    |||||||| |||||||||||||| | |||||||| |||||||||||||||||||| |||| ||||||||||| ||||    
T  26056063 tttgatttattctttaaaagaggaccgttgaattatgtagggtctattgtactttcctgtgaaccactaacacctaa 26055987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 30 - 218
Target Start/End: Original strand, 50678453 - 50678640
Alignment:
Q  30 ccgttacttcttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaattttta 129  Q
    ||||||| |||||||||||| ||  ||||||||||||||||||  ||||||||||||||||||||||| |||| |||| ||  || ||||||| ||||||    
T  50678453 ccgttacctcttttggtcctctctgttagtttttaacatcaaaactctaaggtgaaccatatttaaaggtggttcaccatagaccgtattaaa-ttttta 50678551  T
Q  130 atcttaaccatttgattttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatctaata 218  Q
    || |||||||||||||||||||||||||||||| ||||||||||   ||||||||||||||||||||||| ||| ||||||| ||||||    
T  50678552 attttaaccatttgattttttctttaaaagaggactgttgaattacatagggtctattgtactttactgtgaacgactaacacctaata 50678640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 31 - 218
Target Start/End: Complemental strand, 37624595 - 37624408
Alignment:
Q  31 cgttacttcttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaa 130  Q
    |||||| |||||||||||| ||| ||||||||||||||||||||||||| |||||||||||| |||| | || |||| |   || || |||| |||||||    
T  37624595 cgttacatcttttggtcctctccgttagtttttaacatcaaatgtctaaagtgaaccatattaaaaggttgtgcaccatggaccttagtaaattttttaa 37624496  T
Q  131 tcttaaccatttgattttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatctaata 218  Q
    | |||||| |||||||||||||||||||||||  ||||||||  |||||||||||||||| |||| ||| ||||||||||| ||||||    
T  37624495 ttttaaccttttgattttttctttaaaagaggattgttgaatcatgtagggtctattgtattttagtgtgaaccactaacacctaata 37624408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 31 - 218
Target Start/End: Complemental strand, 30551614 - 30551427
Alignment:
Q  31 cgttacttcttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaa 130  Q
    |||||| |||||||||| | ||| |||||||||| |||||||||||||| |||||||||||| |||| |||| |||| |   || || |||| |||||||    
T  30551614 cgttacctcttttggtcatctccgttagtttttagcatcaaatgtctaaagtgaaccatattaaaaggtggtgcaccatggaccttagtaaattttttaa 30551515  T
Q  131 tcttaaccatttgattttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatctaata 218  Q
    | |||||| |||||||||||||||||||||||  ||||| ||  |||||||||||||||| |||| ||| ||||||||||| ||||||    
T  30551514 ttttaaccttttgattttttctttaaaagaggattgttggatcatgtagggtctattgtattttagtgtgaaccactaacacctaata 30551427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 55 - 216
Target Start/End: Original strand, 14764344 - 14764505
Alignment:
Q  55 ttagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaaccatttgattttttcttt 154  Q
    |||||||||||||| |||||| ||||||||||| ||||||||| ||||||||| || ||| || |||| ||||| || ||||||||||||||||||||||    
T  14764344 ttagtttttaacattaaatgtttaaggtgaaccttatttaaaggtggtccaccatacgccatactaaatttttttattttaaccatttgattttttcttt 14764443  T
Q  155 aaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatctaa 216  Q
    |||| |  | |||| |||  |||||||||||||| |||||||||| ||||||||||| ||||    
T  14764444 aaaaaatagttgttaaatcatgtagggtctattgcactttactgtgaaccactaacacctaa 14764505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 38 - 218
Target Start/End: Complemental strand, 23082144 - 23081964
Alignment:
Q  38 tcttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaac 137  Q
    |||||||||||| ||| ||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||| |   || || |||| |||||||| |||||    
T  23082144 tcttttggtcctttccgttagtttttaacaccaaatatctaaagtgaaccatatttaaaggtggtccaccatggaccttaataaattttttaattttaac 23082045  T
Q  138 catttgattttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatctaata 218  Q
      ||||||||||| |||||||| ||  ||||| ||  |||| ||||||||||| |||| ||| ||||||||||| ||||||    
T  23082044 attttgattttttttttaaaagtggattgttggataatgtaaggtctattgtattttagtgtaaaccactaacacctaata 23081964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 40 - 218
Target Start/End: Original strand, 9633875 - 9634053
Alignment:
Q  40 ttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaacca 139  Q
    ||||| |||| ||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||  || ||||||| |||| ||| || |||     
T  9633875 ttttgatcctctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtggtccaccatagaccttattaaatttttaaattttgaccc 9633974  T
Q  140 tttgattttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatctaata 218  Q
    |||||||||||||||| |||| |   |||| ||| |||||||||| ||||| |||| ||| ||  |||||||| |||||    
T  9633975 tttgattttttctttagaagaagatagttggattatgtagggtcttttgtattttagtgtgaataactaacatttaata 9634053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 31 - 218
Target Start/End: Original strand, 27689374 - 27689565
Alignment:
Q  31 cgttacttcttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaa----aattt 126  Q
    |||||| |||||||||||| ||| ||||||||||||| ||||||||||| ||||||||||||||||| ||||||| | |   || ||||||      |||    
T  27689374 cgttacctcttttggtcctctccgttagtttttaacaccaaatgtctaaagtgaaccatatttaaaggtggtccatcatggaccttattaattttttttt 27689473  T
Q  127 ttaatcttaaccatttgattttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatctaata 218  Q
    ||||| |||||| |||||||||||||||||||||    ||||| ||  |||||||||||||||| |||| ||| ||||||||||| ||||||    
T  27689474 ttaattttaaccttttgattttttctttaaaagataattgttggatcatgtagggtctattgtattttagtgtgaaccactaacacctaata 27689565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 43 - 218
Target Start/End: Complemental strand, 52742989 - 52742814
Alignment:
Q  43 tggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaaccattt 142  Q
    ||||||| ||| ||||||||||||||||||||| ||||||||||||| ||||||| |||| |||| ||  ||  |||| | |||| ||| |||||| |||    
T  52742989 tggtcctctccgttagtttttaacatcaaatgtttaaggtgaaccatgtttaaaggtggtacaccatagacctaattacatttttaaattttaacctttt 52742890  T
Q  143 gattttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatctaata 218  Q
    |||||||||||||||||||   ||||| ||     ||| ||||||||| |||||||| ||||||| ||| ||||||    
T  52742889 gattttttctttaaaagagaattgttggatcacaaaggatctattgtattttactgtaaaccactgacacctaata 52742814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 205
Target Start/End: Complemental strand, 22766838 - 22766670
Alignment:
Q  38 tcttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaac 137  Q
    |||||||||||| ||| ||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||| |   || |  |||| |||||||| |||||    
T  22766838 tcttttggtcctttccgttagtttttaacaccaaatatctaaagtgaaccatatttaaaggtggtccaccatggaccttcataaattttttaattttaac 22766739  T
Q  138 catttga-ttttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaacca 205  Q
    | ||||| |||||| |||||||| ||  ||||| ||  |||| ||||||||||| |||| ||| |||||    
T  22766738 cttttgatttttttttttaaaagtggattgttggataatgtaaggtctattgtattttagtgtaaacca 22766670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 107
Target Start/End: Original strand, 44977304 - 44977388
Alignment:
Q  23 tcttctcccgttacttcttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccacc 107  Q
    |||||| ||||||| || ||||||| | ||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  44977304 tcttctgccgttacctcatttggtcatctctgttagtttttaacatcaaatgtctaaggtgaaccatatttaaaggtggtccacc 44977388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 49141497 - 49141445
Alignment:
Q  55 ttagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccacc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  49141497 ttagtttttaacatcaaatgtctaaggtgaaccatatttaaagttgttccacc 49141445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 337 - 375
Target Start/End: Original strand, 17244476 - 17244514
Alignment:
Q  337 tttaatcactacataaccatcattgtcatcttcatctat 375  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  17244476 tttaatcactacatcaccatcattgtcatcttcatctat 17244514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 21277094 - 21277161
Alignment:
Q  40 ttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccacc 107  Q
    ||||| |||| ||||||||||||| || | |||||||||||||||||||  |||| || |||||||||    
T  21277094 ttttgatcctctccattagtttttgaccttaaatgtctaaggtgaaccaactttataggtggtccacc 21277161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 337 - 375
Target Start/End: Complemental strand, 7111304 - 7111266
Alignment:
Q  337 tttaatcactacataaccatcattgtcatcttcatctat 375  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  7111304 tttaatcactacaccaccatcattgtcatcttcatctat 7111266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 36509872 - 36509954
Alignment:
Q  1 tgtttcaatttggttcctcaactcttctcccgttacttcttttggtcctatccattagtttttaacatcaaatgtctaaggtg 83  Q
    |||||||||||||||||  || |||||| |||||   | ||||||| || ||| |||||||||||| ||||||||||| ||||    
T  36509872 tgtttcaatttggttccataaatcttctgccgtttactattttggttctctccgttagtttttaacctcaaatgtctatggtg 36509954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 14169719 - 14169767
Alignment:
Q  40 ttttggtcctatccattagtttttaacatcaaatgtctaaggtgaacca 88  Q
    |||||||| ||||  |||||||||||| | |||||||||||||||||||    
T  14169719 ttttggtcttatctgttagtttttaaccttaaatgtctaaggtgaacca 14169767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 335 - 375
Target Start/End: Complemental strand, 51218704 - 51218664
Alignment:
Q  335 tctttaatcactacataaccatcattgtcatcttcatctat 375  Q
    ||||||||||  ||| |||||||||||||||||||||||||    
T  51218704 tctttaatcatcacacaaccatcattgtcatcttcatctat 51218664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 107
Target Start/End: Complemental strand, 51726845 - 51726793
Alignment:
Q  55 ttagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccacc 107  Q
    |||||||||||| | |||||||||||||||||||  |||| || |||||||||    
T  51726845 ttagtttttaaccttaaatgtctaaggtgaaccaactttataggtggtccacc 51726793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 23 - 225
Target Start/End: Complemental strand, 207831 - 207629
Alignment:
Q  23 tcttctcccgttacttcttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaa 122  Q
    |||||| ||||||  |||||||||||| ||| ||||||||||||||||||||||| ||||||||||| ||||||| ||||||||| |||||| || ||||    
T  207831 tcttcttccgttatctcttttggtcctctccgttagtttttaacatcaaatgtcttaggtgaaccatgtttaaaggtggtccaccatatgccttactaaa 207732  T
Q  123 atttttaatcttaaccatttgattttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatctaataaaat 222  Q
     |||||||| |||||||||||||||||||||||||| | | |  ||||||   || | ||||||||||||||||||| |||||||||||||| |||||||    
T  207731 ttttttaattttaaccatttgattttttctttaaaacaagaccattgaatcaagttgagtctattgtactttactgtgaaccactaacatctgataaaat 207632  T
Q  223 cca 225  Q
    |||    
T  207631 cca 207629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 4e-51; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 23 - 225
Target Start/End: Original strand, 21961906 - 21962108
Alignment:
Q  23 tcttctcccgttacttcttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaa 122  Q
    |||||| ||||||  |||||||||||| ||| ||||||||||||||||||||||| ||||||||||| ||||||| ||||||||| |||||| || ||||    
T  21961906 tcttcttccgttatctcttttggtcctctccgttagtttttaacatcaaatgtcttaggtgaaccatgtttaaaggtggtccaccatatgccttactaaa 21962005  T
Q  123 atttttaatcttaaccatttgattttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatctaataaaat 222  Q
     |||||||| |||||||||||||||||||||||||| | | |  ||||||   || | ||||||||||||||||||| |||||||||||||| |||||||    
T  21962006 ttttttaattttaaccatttgattttttctttaaaacaagaccattgaatcaagttgagtctattgtactttactgtgaaccactaacatctgataaaat 21962105  T
Q  223 cca 225  Q
    |||    
T  21962106 cca 21962108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 23 - 225
Target Start/End: Complemental strand, 44103329 - 44103125
Alignment:
Q  23 tcttctcccgttacttcttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaa- 121  Q
    |||||| ||||| | |||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||| ||||||     
T  44103329 tcttcttccgtttcctcttttggtcctctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtggtccaccatatgccttattaat 44103230  T
Q  122 aatttttaatcttaaccatttga-ttttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatctaataaa 220  Q
      |||||||| |||||||||||| ||||||| |||||||| | | |||||||  ||| ||||||||||||||||| ||| ||||||| ||| ||||||||    
T  44103229 tttttttaattttaaccatttgatttttttcattaaaagaagaccgttgaatcatgtggggtctattgtactttattgtgaaccactcacacctaataaa 44103130  T
Q  221 atcca 225  Q
    |||||    
T  44103129 atcca 44103125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 23 - 223
Target Start/End: Original strand, 21670147 - 21670347
Alignment:
Q  23 tcttctcccgttacttcttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaa 122  Q
    |||||| ||||||| |||||||||| | ||| ||||||||||||||||||| |||||||||||||||||| |||  ||||||||| |||||| ||||||     
T  21670147 tcttcttccgttacctcttttggtcttctccgttagtttttaacatcaaatatctaaggtgaaccatattaaaaagtggtccaccatatgccttattaat 21670246  T
Q  123 atttttaatcttaaccatttgattttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatctaataaaat 222  Q
     |||||||| ||||||||||| |||||||||||||||||| | |||||||  ||| ||||||||| ||||||| ||| || || | ||| ||||||||||    
T  21670247 ttttttaattttaaccatttggttttttctttaaaagaggaccgttgaatcatgtggggtctattatactttagtgtgaatcattcacacctaataaaat 21670346  T
Q  223 c 223  Q
    |    
T  21670347 c 21670347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 23 - 222
Target Start/End: Original strand, 13513503 - 13513702
Alignment:
Q  23 tcttctcccgttacttcttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaa 122  Q
    |||||| | ||||| |||||||||||| ||| |||| |||||||||||||||| |||| |||||||||||||||  ||||||||| ||| || ||||||     
T  13513503 tcttcttctgttacctcttttggtcctctccgttagcttttaacatcaaatgtataagatgaaccatatttaaaagtggtccaccatataccttattaat 13513602  T
Q  123 atttttaatcttaaccatttgattttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatctaataaaat 222  Q
     |||||||| |||||||||||||||||||||||||| ||| | |||||||  |||  |||||||||||||||||||| ||||||| ||| | ||||||||    
T  13513603 ttttttaattttaaccatttgattttttctttaaaataggaccgttgaatcatgtgaggtctattgtactttactgtgaaccactcacaccaaataaaat 13513702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 23 - 222
Target Start/End: Original strand, 13603036 - 13603235
Alignment:
Q  23 tcttctcccgttacttcttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaa 122  Q
    |||||| | ||||| |||||||||||| ||| |||| |||||||||||||||| |||| |||||||||||||||  ||||||||| ||| || ||||||     
T  13603036 tcttcttctgttacctcttttggtcctctccgttagcttttaacatcaaatgtataagatgaaccatatttaaaagtggtccaccatataccttattaat 13603135  T
Q  123 atttttaatcttaaccatttgattttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatctaataaaat 222  Q
     |||||||| |||||||||||||||||||||||||| ||| | |||||||  |||  |||||||||||||||||||| ||||||| ||| | ||||||||    
T  13603136 ttttttaattttaaccatttgattttttctttaaaataggaccgttgaatcatgtgaggtctattgtactttactgtgaaccactcacaccaaataaaat 13603235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 30 - 217
Target Start/End: Original strand, 10052194 - 10052381
Alignment:
Q  30 ccgttacttcttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaattttta 129  Q
    ||||||| |||||||||| | ||| |||||||||||||| ||||||||||| |||||||||||||||| ||||||||| ||  || ||||||| |||| |    
T  10052194 ccgttacctcttttggtcatctcctttagtttttaacattaaatgtctaagatgaaccatatttaaaggtggtccaccataaaccttattaaatttttaa 10052293  T
Q  130 atcttaaccatttgattttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatctaat 217  Q
     | |||||| ||||||||||||||||||||| |  ||||| ||  |||||||||||||||| |||||||| |||||||| || |||||    
T  10052294 gttttaaccctttgattttttctttaaaagatgattgttggatcatgtagggtctattgtattttactgtgaaccactaccacctaat 10052381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 32 - 218
Target Start/End: Complemental strand, 13363602 - 13363416
Alignment:
Q  32 gttacttcttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaat 131  Q
    ||||| |||||||||||| ||| ||||||||||||| ||||||||||| ||||||||||||||||| |||| |||| |   || || |||| ||||||||    
T  13363602 gttacctcttttggtcctctccgttagtttttaacaccaaatgtctaaagtgaaccatatttaaaggtggtgcaccatggaccttagtaaattttttaat 13363503  T
Q  132 cttaaccatttgattttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatctaata 218  Q
     |||||| ||| |||||||||||||||||||  ||||| ||  |||||||||||||||| |||  ||| ||||||||||| ||||||    
T  13363502 tttaaccttttaattttttctttaaaagaggattgttggatcatgtagggtctattgtatttttgtgtgaaccactaacacctaata 13363416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 56 - 223
Target Start/End: Complemental strand, 39325834 - 39325666
Alignment:
Q  56 tagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaaccatttgatt-ttttcttt 154  Q
    ||||||||||||||||||||||||||||||| || ||||||| ||||| | | |||||| || |||| |||||||| |||||||||||||| ||||||||    
T  39325834 tagtttttaacatcaaatgtctaaggtgaactatgtttaaaggtggtctatcatatgccttactaaattttttaattttaaccatttgatttttttcttt 39325735  T
Q  155 aaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatctaataaaatc 223  Q
    ||||||  || |||| ||  |||| |  ||||||||||||||||| ||||| ||||| |||||||||||    
T  39325734 aaaagaatgcagttggatcatgtacgacctattgtactttactgtgaaccattaacacctaataaaatc 39325666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 40 - 218
Target Start/End: Original strand, 36756164 - 36756343
Alignment:
Q  40 ttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaacca 139  Q
    |||||||| | ||| ||||||||||||||||||| ||||||||||| ||||||||||| |||| |||| || ||| ||||||| |||| ||| ||||||     
T  36756164 ttttggtcatctccgttagtttttaacatcaaatttctaaggtgaatcatatttaaaggtggttcaccataagccttattaaatttttaaattttaaccc 36756263  T
Q  140 tttgattttttctttaaaagagggctgttgaattttgtagggtct-attgtactttactgtcaaccactaacatctaata 218  Q
    ||| ||||||||||||||||||    |||| ||  |||||||||| |||||| |||||||| ||||||||||| ||||||    
T  36756264 tttaattttttctttaaaagagaatcgttggatcatgtagggtctaattgtattttactgtgaaccactaacacctaata 36756343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 42 - 189
Target Start/End: Complemental strand, 37276257 - 37276110
Alignment:
Q  42 ttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaaccatt 141  Q
    |||||||| ||  |||||||||||||||||| |||||||||||||||||||||||| |||| |||  ||  || ||||||| |||||||| |||||||||    
T  37276257 ttggtcctctctgttagtttttaacatcaaaagtctaaggtgaaccatatttaaaggtggttcactatagaccatattaaattttttaattttaaccatt 37276158  T
Q  142 tgattttttctttaaaagagggctgttgaattttgtagggtctattgt 189  Q
    ||||||||||||||||||||| |  ||||||| ||||  |||||||||    
T  37276157 tgattttttctttaaaagaggacctttgaattatgtaaagtctattgt 37276110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 40 - 218
Target Start/End: Original strand, 117148 - 117325
Alignment:
Q  40 ttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaacca 139  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||  ||| ||||||| ||||||||| ||  || || | ||||||| ||| ||| ||     
T  117148 ttttggtcctctccgttagtttttaacatcaaatgtctaaggtgagtcatgtttaaaggtggtccaccatagaccttact-aaattttaaattttagcct 117246  T
Q  140 tttgattttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatctaata 218  Q
    ||||||||||||||| |||||||  ||||| ||  | |||| ||||||||| |||| ||| |||||| ||||| |||||    
T  117247 tttgattttttctttgaaagaggattgttggatcatataggatctattgtattttattgtaaaccaccaacatttaata 117325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 40 - 162
Target Start/End: Original strand, 7486177 - 7486299
Alignment:
Q  40 ttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaacca 139  Q
    |||||||||| ||| ||||||||||||||||||||||||| ||||||||| ||||||  | ||||||| ||  || ||||||| |||| ||| ||| ||     
T  7486177 ttttggtcctctccgttagtttttaacatcaaatgtctaaagtgaaccatgtttaaatgttgtccaccatagaccttattaaatttttaaattttagcct 7486276  T
Q  140 tttgattttttctttaaaagagg 162  Q
    |||||||||||||||||||||||    
T  7486277 tttgattttttctttaaaagagg 7486299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 40 - 217
Target Start/End: Complemental strand, 39546693 - 39546516
Alignment:
Q  40 ttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaacca 139  Q
    |||||||| | ||| ||||||||||||||||||||| |||| |||||||| ||||||| ||||||||| |   || || |||||   ||||| ||||||     
T  39546693 ttttggtcatctccgttagtttttaacatcaaatgtttaagatgaaccatgtttaaaggtggtccaccatggaccttagtaaaaaaattaattttaaccc 39546594  T
Q  140 tttgattttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatctaat 217  Q
    ||||||||||| |||||||||||  ||||| ||  ||| || ||||||||| ||||| || |||||| |||| |||||    
T  39546593 tttgattttttttttaaaagaggattgttggatcatgtgggatctattgtattttaccgtgaaccacaaacacctaat 39546516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 51 - 218
Target Start/End: Original strand, 45541595 - 45541757
Alignment:
Q  51 tccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaaccatttgatttttt 150  Q
    ||||||| |||||||||||||| |||||| ||||| ||||||||||| |||| |||| |      ||||||| |||||||| ||||| ||||||||||||    
T  45541595 tccattaatttttaacatcaaaagtctaaagtgaatcatatttaaag-tggttcaccatggaatgtattaaattttttaattttaacaatttgatttttt 45541693  T
Q  151 ctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatctaata 218  Q
     |||||| ||   |  ||||||| ||||||||||||||||||||||||| ||||||||| ||||||||    
T  45541694 -tttaaatga---ccattgaattatgtagggtctattgtactttactgtaaaccactaatatctaata 45541757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 41 - 158
Target Start/End: Original strand, 21267233 - 21267351
Alignment:
Q  41 tttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaaccat 140  Q
    ||||||||| ||| ||||||||||||||||||| ||||||||| |||||  || ||| ||||||||| ||| ||  |||||| |||| ||| |||||| |    
T  21267233 tttggtcctctccgttagtttttaacatcaaatatctaaggtggaccatgattcaaggtggtccaccatatacctaattaaatttttaaattttaacctt 21267332  T
Q  141 ttga-ttttttctttaaaa 158  Q
    |||| ||||||||||||||    
T  21267333 ttgatttttttctttaaaa 21267351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 2421348 - 2421191
Alignment:
Q  1 tgtttcaatttggttcctcaactcttctcccgttacttcttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatg 100  Q
    |||||||||||||| ||  || |||||| |||||  || |||||||||| |   |||||||||||| | |||||||||||||||||||  |||| |||||    
T  2421348 tgtttcaatttggtcccagaaatcttctgccgtttattattttggtcctctttgttagtttttaaccttaaatgtctaaggtgaaccaactttatagatg 2421249  T
Q  101 gtccaccttatgccctattaaaatttttaatcttaaccatttgat-tttttctttaaa 157  Q
    ||||| | ||  || |||||||  ||||| | |||||| |||||| ||||||||||||    
T  2421248 gtccatcatagaccttattaaatcttttatttttaaccgtttgatctttttctttaaa 2421191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 44606200 - 44606356
Alignment:
Q  1 tgtttcaatttggttcctcaactcttctcccgttacttcttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatg 100  Q
    |||||||||||||| ||  || |||||| | |||  || ||||| |||| |||||||||||||||| | |||||||||||||||||||  |||| || ||    
T  44606200 tgtttcaatttggtcccataaatcttcttctgtttattattttgatcctctccattagtttttaaccttaaatgtctaaggtgaaccaactttataggtg 44606299  T
Q  101 gtccaccttatgccctattaaaatttttaatcttaaccatttgattttttctttaaa 157  Q
    ||||||| ||  || | |||||  ||||| | |||||| |||||| |||| ||||||    
T  44606300 gtccaccatagaccttgttaaatcttttatttttaaccgtttgatcttttttttaaa 44606356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 40 - 150
Target Start/End: Complemental strand, 13367066 - 13366956
Alignment:
Q  40 ttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaacca 139  Q
    |||||||||| ||| |||||||||||| | |||||||||||||||||||  |||| || ||||||||| ||  || |||||||  ||||| | ||||||     
T  13367066 ttttggtcctctccgttagtttttaaccttaaatgtctaaggtgaaccaactttataggtggtccaccatagaccttattaaaccttttatttttaaccg 13366967  T
Q  140 tttgatttttt 150  Q
    |||||| ||||    
T  13366966 tttgatatttt 13366956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 19913592 - 19913659
Alignment:
Q  40 ttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccacc 107  Q
    |||||||||| ||| |||||||||||| | |||| ||||||||||||||  |||| ||||||||||||    
T  19913592 ttttggtcctctccgttagtttttaaccttaaatttctaaggtgaaccaactttatagatggtccacc 19913659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 36938800 - 36938848
Alignment:
Q  59 tttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccacc 107  Q
    ||||||||||||||| ||||| ||||||||||||||||| |||| ||||    
T  36938800 tttttaacatcaaatatctaaagtgaaccatatttaaaggtggttcacc 36938848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 335 - 375
Target Start/End: Complemental strand, 44103027 - 44102987
Alignment:
Q  335 tctttaatcactacataaccatcattgtcatcttcatctat 375  Q
    ||||||||||  |||||||||||||||||||||||||||||    
T  44103027 tctttaatcatcacataaccatcattgtcatcttcatctat 44102987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 150
Target Start/End: Original strand, 8095446 - 8095556
Alignment:
Q  40 ttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaacca 139  Q
    |||||||||| ||| |||||||||||  | |||||||||||||||||||  |||| || || | |||| ||| || |||||||  || ||   |||||||    
T  8095446 ttttggtcctttccgttagtttttaatcttaaatgtctaaggtgaaccaactttataggtgatgcaccatataccttattaaatcttgtatctttaacca 8095545  T
Q  140 tttgatttttt 150  Q
    |||||||||||    
T  8095546 tttgatttttt 8095556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 337 - 375
Target Start/End: Complemental strand, 39325572 - 39325534
Alignment:
Q  337 tttaatcactacataaccatcattgtcatcttcatctat 375  Q
    ||||||||| ||| |||||||||||||||||||||||||    
T  39325572 tttaatcaccacacaaccatcattgtcatcttcatctat 39325534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 120
Target Start/End: Complemental strand, 12281796 - 12281716
Alignment:
Q  40 ttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctatta 120  Q
    ||||| |||| ||| ||||||||||||||||||| ||||| ||| |||||  || ||| ||||||||| ||| || |||||    
T  12281796 ttttgatcctctccgttagtttttaacatcaaatatctaatgtggaccatgattcaaggtggtccaccatataccttatta 12281716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 15116860 - 15116796
Alignment:
Q  98 atggtccaccttatgccctattaaaatttttaatcttaaccatttgattttttctttaaaagagg 162  Q
    |||||||||| |||| | ||||||  |||| ||  |||||||||||||||||||| |||||||||    
T  15116860 atggtccaccatatgtcttattaattttttgaacattaaccatttgattttttctctaaaagagg 15116796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 16363828 - 16363780
Alignment:
Q  40 ttttggtcctatccattagtttttaacatcaaatgtctaaggtgaacca 88  Q
    |||||||||| ||| |||||| ||||| | |||||||||||||||||||    
T  16363828 ttttggtcctctccgttagttattaactttaaatgtctaaggtgaacca 16363780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 20308705 - 20308753
Alignment:
Q  40 ttttggtcctatccattagtttttaacatcaaatgtctaaggtgaacca 88  Q
    |||||||| | ||||||| |||||||| | |||||||||||||||||||    
T  20308705 ttttggtcatttccattaatttttaaccttaaatgtctaaggtgaacca 20308753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 21095338 - 21095386
Alignment:
Q  40 ttttggtcctatccattagtttttaacatcaaatgtctaaggtgaacca 88  Q
    |||||||| | ||||||| |||||||| | |||||||||||||||||||    
T  21095338 ttttggtcatttccattaatttttaaccttaaatgtctaaggtgaacca 21095386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 35944008 - 35944056
Alignment:
Q  40 ttttggtcctatccattagtttttaacatcaaatgtctaaggtgaacca 88  Q
    |||||||| | ||| |||||||||||| | |||||||||||||||||||    
T  35944008 ttttggtcatctccgttagtttttaactttaaatgtctaaggtgaacca 35944056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 218
Target Start/End: Complemental strand, 41522631 - 41522559
Alignment:
Q  146 tttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatctaata 218  Q
    ||||||||||||||||   ||||| ||  |||||||||||||||| |||| ||| |||||| |||| ||||||    
T  41522631 tttttctttaaaagagatttgttggatgatgtagggtctattgtattttattgtaaaccaccaacacctaata 41522559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 33 - 218
Target Start/End: Complemental strand, 39924 - 39739
Alignment:
Q  33 ttacttcttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatc 132  Q
    |||| |||||||||||| ||  |||||||||||||||||| |||||||||||| ||||||||||| |||| |||| |   || ||||||| ||||||||     
T  39924 ttacctcttttggtcctctctgttagtttttaacatcaaaagtctaaggtgaatcatatttaaaggtggttcaccatggaccgtattaaattttttaatt 39825  T
Q  133 ttaaccatttgattttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatctaata 218  Q
    |||||||||||||||||||||||||||| | |  ||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  39824 ttaaccatttgattttttctttaaaagatgaccattgaattatgtagggtctattgtactttactgtgaaccactaacatctaata 39739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 5e-44; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 23 - 222
Target Start/End: Complemental strand, 24495084 - 24494883
Alignment:
Q  23 tcttctcccgttacttcttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaa 122  Q
    |||||| | ||||| || ||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||  ||||||||| |||||| ||||||     
T  24495084 tcttcttctgttacctcgtttggtcctctccgttagtttttaacatcaaatgtctaaagtgaaccatatttaaaagtggtccaccatatgccttattaat 24494985  T
Q  123 atttttaatcttaaccatttgatttttt--ctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatctaataaa 220  Q
     |||||||| ||||||||||||||||||  ||||||||||   | |||||||  ||| | ||||||||||||||||||| ||||||| ||| ||||||||    
T  24494984 ttttttaattttaaccatttgatttttttcctttaaaagataaccgttgaatcatgtggcgtctattgtactttactgtgaaccactcacacctaataaa 24494885  T
Q  221 at 222  Q
    ||    
T  24494884 at 24494883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 40 - 187
Target Start/End: Complemental strand, 14109087 - 14108940
Alignment:
Q  40 ttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaacca 139  Q
    |||| ||||| ||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||  || |||||||||||| ||| ||||||     
T  14109087 ttttagtcctctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtggtccaccatagaccttattaaaattttaaattttaacct 14108988  T
Q  140 tttgattttttctttaaaagagggctgttgaattttgtagggtctatt 187  Q
    ||| |||||||||||||||||||  ||||| ||  |||||| ||||||    
T  14108987 tttaattttttctttaaaagaggattgttggatcatgtaggatctatt 14108940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 40 - 187
Target Start/End: Complemental strand, 14419044 - 14418897
Alignment:
Q  40 ttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaacca 139  Q
    |||| ||||| ||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||  || |||||||||||| ||| ||||||     
T  14419044 ttttagtcctctccgttagtttttaacatcaaatgtctaaggtgaaccatgtttaaaggtggtccaccatagaccttattaaaattttaaattttaacct 14418945  T
Q  140 tttgattttttctttaaaagagggctgttgaattttgtagggtctatt 187  Q
    ||| |||||||||||||||||||  ||||| ||  |||||| ||||||    
T  14418944 tttaattttttctttaaaagaggattgttggatcatgtaggatctatt 14418897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 59 - 206
Target Start/End: Original strand, 4167570 - 4167717
Alignment:
Q  59 tttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaaccatttgattttttctttaaaa 158  Q
    ||||||||||||||| ||||||||||||||| ||||||| ||||||||| ||   | ||||||| |||| ||| | |||| |||||||||||||||||||    
T  4167570 tttttaacatcaaatttctaaggtgaaccatgtttaaaggtggtccaccatagatcttattaaatttttaaatttcaaccttttgattttttctttaaaa 4167669  T
Q  159 gagggctgttgaattttgtagggtctattgtactttactgtcaaccac 206  Q
    ||||  ||||| ||  |||||||||| ||||| |||| ||| ||||||    
T  4167670 gaggtttgttggatgatgtagggtctgttgtattttattgtaaaccac 4167717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 94 - 216
Target Start/End: Complemental strand, 35315199 - 35315077
Alignment:
Q  94 aaagatggtccaccttatgccctattaaaatttttaatcttaaccatttgattttttctttaaaagagggctgttgaattttgtagggtctattgtactt 193  Q
    |||| ||||||||| |||||| || |||| ||||| || |||||||||| |||||||||||||||||    ||||||||  |||||||||| ||||||||    
T  35315199 aaaggtggtccaccatatgccttactaaatttttttattttaaccattttattttttctttaaaagataattgttgaatcatgtagggtcttttgtactt 35315100  T
Q  194 tactgtcaaccactaacatctaa 216  Q
    |||||| ||| ||||||| ||||    
T  35315099 tactgtgaactactaacacctaa 35315077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 40 - 162
Target Start/End: Original strand, 38406118 - 38406239
Alignment:
Q  40 ttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaacca 139  Q
    |||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||| | ||||| | ||  || ||||||| |||| ||| | ||||     
T  38406118 ttttggtcctttccgttaatttttaacatcaaatgtctaaggtgaaccatatttaaaggtagtcca-catagaccttattaaatttttaaatttcaacct 38406216  T
Q  140 tttgattttttctttaaaagagg 162  Q
    ||| ||||||| |||||||||||    
T  38406217 tttaattttttgtttaaaagagg 38406239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 199
Target Start/End: Complemental strand, 19848831 - 19848691
Alignment:
Q  59 tttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaaccatttgattttttctttaaaa 158  Q
    ||||||||| ||||| ||||||||||||||||||| ||| || |||||| |   || || |||||  ||||||  ||||| ||||||||||| |||||||    
T  19848831 tttttaacagcaaatctctaaggtgaaccatatttcaaggtgatccaccatggaccttagtaaaaaatttaattgtaaccctttgattttttgtttaaaa 19848732  T
Q  159 gagggctgttgaattttgtagggtctattgtactttactgt 199  Q
    ||||  ||||| ||  ||||| |||||||||| ||||||||    
T  19848731 gaggattgttggatcatgtagagtctattgtattttactgt 19848691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 59 - 195
Target Start/End: Original strand, 18801334 - 18801470
Alignment:
Q  59 tttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaaccatttgattttttctttaaaa 158  Q
    ||||||||| ||||| ||||||||||||||||||| ||| || |||||| |   || || |||||  ||||||  ||||| ||| ||||||| |||||||    
T  18801334 tttttaacagcaaatctctaaggtgaaccatatttcaaggtgatccaccatggaccttagtaaaaaatttaattgtaaccctttaattttttgtttaaaa 18801433  T
Q  159 gagggctgttgaattttgtagggtctattgtacttta 195  Q
    ||||  ||||| ||  ||||| |||||||||| ||||    
T  18801434 gaggattgttggatcatgtagagtctattgtatttta 18801470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 4857301 - 4857347
Alignment:
Q  40 ttttggtcctatccattagtttttaacatcaaatgtctaaggtgaac 86  Q
    |||| ||||| ||| ||||||||||||||||||||||||||||||||    
T  4857301 ttttagtcctctccgttagtttttaacatcaaatgtctaaggtgaac 4857347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 337 - 375
Target Start/End: Original strand, 37236085 - 37236123
Alignment:
Q  337 tttaatcactacataaccatcattgtcatcttcatctat 375  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  37236085 tttaatcactacatcaccatcattgtcatcttcatctat 37236123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 337 - 375
Target Start/End: Complemental strand, 35314981 - 35314943
Alignment:
Q  337 tttaatcactacataaccatcattgtcatcttcatctat 375  Q
    ||||||||| ||| |||||||||||||||||||||||||    
T  35314981 tttaatcaccacacaaccatcattgtcatcttcatctat 35314943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 40930518 - 40930567
Alignment:
Q  40 ttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccat 89  Q
    |||| ||||| || |||||||||||||||||||| ||||||||| |||||    
T  40930518 ttttagtcctctctattagtttttaacatcaaatatctaaggtggaccat 40930567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 27899230 - 27899182
Alignment:
Q  40 ttttggtcctatccattagtttttaacatcaaatgtctaaggtgaacca 88  Q
    |||||||| ||||| |||||||||||| | |||| ||||||||||||||    
T  27899230 ttttggtcttatccgttagtttttaaccttaaatatctaaggtgaacca 27899182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 46458729 - 46458681
Alignment:
Q  40 ttttggtcctatccattagtttttaacatcaaatgtctaaggtgaacca 88  Q
    |||||||||| ||| || ||||||||| | |||||||||||||||||||    
T  46458729 ttttggtcctctccgtttgtttttaaccttaaatgtctaaggtgaacca 46458681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 55 - 216
Target Start/End: Original strand, 41023 - 41184
Alignment:
Q  55 ttagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaaccatttgattttttcttt 154  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| || |||| ||||| || |||||||||||||||||| |||    
T  41023 ttagtttttaacatcaaatgtctaaggtgaaccatatttaaaggtggtccaccatatgccttactaaatttttttattttaaccatttgatttttttttt 41122  T
Q  155 aaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatctaa 216  Q
    ||||||   | |||||||  |||||| | |||||||||||||||| ||||||||||| ||||    
T  41123 aaaagataaccgttgaatcatgtaggatttattgtactttactgtgaaccactaacacctaa 41184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 8e-40; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 23 - 205
Target Start/End: Complemental strand, 18139520 - 18139337
Alignment:
Q  23 tcttctcccgttacttcttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaa 122  Q
    |||||| |||||  || |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||  |  |||||||    
T  18139520 tcttctgccgtttattgttttggtcctctccattagtttttaacatcaaatgtctaaggtgaaccatgtttaaagatgatccaccatagacattattaaa 18139421  T
Q  123 atttttaatcttaacc-atttgattttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaacca 205  Q
     |||| ||| ||||||  |||||||||||||||||||||||  ||||| ||  |||||||||||||||| |||||||| |||||    
T  18139420 tttttaaattttaacctttttgattttttctttaaaagaggattgttggatcatgtagggtctattgtattttactgtgaacca 18139337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 136 - 218
Target Start/End: Complemental strand, 34084154 - 34084072
Alignment:
Q  136 accatttgattttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatctaata 218  Q
    |||||||||||||||||||||| |||| | |||||||| ||||||||||||||||||||||||| ||||||||||| ||||||    
T  34084154 accatttgattttttctttaaatgaggaccgttgaattatgtagggtctattgtactttactgtgaaccactaacacctaata 34084072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 42 - 189
Target Start/End: Complemental strand, 33802031 - 33801884
Alignment:
Q  42 ttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaaccatt 141  Q
    |||||||| ||| ||||||||||||||||||| ||||||||  |||||  || ||| ||||||||| ||| || ||||||| |||| ||| |||| | ||    
T  33802031 ttggtcctctccgttagtttttaacatcaaatatctaaggtagaccatgattcaaggtggtccaccatataccttattaaatttttaaattttaa-cttt 33801933  T
Q  142 tga-ttttttctttaaaagagggctgttgaattttgtagggtctattgt 189  Q
    ||| ||||||||||||||||||  ||||| ||  |||||||||||||||    
T  33801932 tgatttttttctttaaaagaggattgttggatcatgtagggtctattgt 33801884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 55 - 190
Target Start/End: Complemental strand, 13507172 - 13507038
Alignment:
Q  55 ttagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaaccatttgattttttcttt 154  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||| | |  ||  || |||||  | |||| |||||| |||||||||||||||    
T  13507172 ttagtttttaacatcaaatgtttaaggtgaaccatatttaaaggtggtcca-catgggctttaataaaacctctaattttaaccctttgattttttcttt 13507074  T
Q  155 aaaagagggctgttgaattttgtagggtctattgta 190  Q
    |||||| |  ||||| ||  ||||||||| ||||||    
T  13507073 aaaagaagattgttggatcatgtagggtcaattgta 13507038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 14328790 - 14328723
Alignment:
Q  40 ttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccacc 107  Q
    |||||||||| ||| ||| |||||||| | |||||||||||||||||||  |||| || |||||||||    
T  14328790 ttttggtcctctccgttactttttaaccttaaatgtctaaggtgaaccaactttataggtggtccacc 14328723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 14421800 - 14421733
Alignment:
Q  40 ttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccacc 107  Q
    |||||||||| ||| ||| |||||||| | |||||||||||||||||||  |||| || |||||||||    
T  14421800 ttttggtcctctccgttactttttaaccttaaatgtctaaggtgaaccaactttataggtggtccacc 14421733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 31738463 - 31738530
Alignment:
Q  40 ttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccacc 107  Q
    |||||||||| ||| |||||||||||| | |||||||||| ||||||||  |||| ||| ||||||||    
T  31738463 ttttggtcctctccgttagtttttaaccttaaatgtctaatgtgaaccaactttatagacggtccacc 31738530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 88
Target Start/End: Original strand, 30231601 - 30231629
Alignment:
Q  60 ttttaacatcaaatgtctaaggtgaacca 88  Q
    |||||||||||||||||||||||||||||    
T  30231601 ttttaacatcaaatgtctaaggtgaacca 30231629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1974 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold1974
Description:

Target: scaffold1974; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 40 - 218
Target Start/End: Complemental strand, 644 - 466
Alignment:
Q  40 ttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaacca 139  Q
    |||||||| | ||| |||||||||||||| |||  |||||||||||||||||||||||||||| |||| ||   | ||||||| ||| |||| |||||||    
T  644 ttttggtcatctccgttagtttttaacataaaaaatctaaggtgaaccatatttaaagatggttcaccgtagatcttattaaattttctaattttaacca 545  T
Q  140 tttgattttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatctaata 218  Q
    |||||||||||||||||| |||  | |||||||| ||| ||||||||| ||||||||||| || || ||||| ||||||    
T  544 tttgattttttctttaaatgagaaccgttgaattatgtcgggtctattatactttactgtgaatcattaacacctaata 466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1878 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold1878
Description:

Target: scaffold1878; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 40 - 218
Target Start/End: Original strand, 630 - 808
Alignment:
Q  40 ttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaacca 139  Q
    |||||||| | ||| |||||||||||||| |||  |||||||||||||||||||||||||||| |||| ||   | ||||||| ||| |||| |||||||    
T  630 ttttggtcatctccgttagtttttaacataaaaaatctaaggtgaaccatatttaaagatggttcaccgtagatcttattaaattttctaattttaacca 729  T
Q  140 tttgattttttctttaaaagagggctgttgaattttgtagggtctattgtactttactgtcaaccactaacatctaata 218  Q
    |||||||||||||||||| |||  | |||||||| ||| ||||||||| ||||||||||| || || ||||| ||||||    
T  730 tttgattttttctttaaatgagaaccgttgaattatgtcgggtctattatactttactgtgaatcattaacacctaata 808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 40 - 155
Target Start/End: Complemental strand, 9494 - 9379
Alignment:
Q  40 ttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaacca 139  Q
    |||||||| | ||| |||||||||||||| |||  |||||||||||||||||||||||||||| |||| ||   | ||||||| ||| |||| |||||||    
T  9494 ttttggtcatctccgttagtttttaacataaaaaatctaaggtgaaccatatttaaagatggttcaccgtagatcttattaaattttctaattttaacca 9395  T
Q  140 tttgattttttcttta 155  Q
    ||||||||||||||||    
T  9394 tttgattttttcttta 9379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 54 - 160
Target Start/End: Complemental strand, 56702 - 56595
Alignment:
Q  54 attagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaaccatttga-ttttttct 152  Q
    |||||||||||||||||||| |||||||  ||| || |||||||||||||||||  |  || ||||||| |||| ||| |||||| ||||| ||||||||    
T  56702 attagtttttaacatcaaatatctaagggaaactatgtttaaagatggtccaccaaagaccttattaaatttttaaattttaaccttttgatttttttct 56603  T
Q  153 ttaaaaga 160  Q
    ||||||||    
T  56602 ttaaaaga 56595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 23674 - 23715
Alignment:
Q  184 tattgtactttactgtcaaccactaacatctaataaaatcca 225  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  23674 tattgtactttactgtcaaccactaacatctaataaaatcca 23715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0046; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 375
Target Start/End: Original strand, 23817 - 23862
Alignment:
Q  330 catattctttaatcactacataaccatcattgtcatcttcatctat 375  Q
    |||||||||||||||||| | || ||| ||||||||||||||||||    
T  23817 catattctttaatcactatacaatcataattgtcatcttcatctat 23862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 150
Target Start/End: Original strand, 16045 - 16155
Alignment:
Q  40 ttttggtcctatccattagtttttaacatcaaatgtctaaggtgaaccatatttaaagatggtccaccttatgccctattaaaatttttaatcttaacca 139  Q
    |||| ||||| ||| |||||||||||| | ||||||||||| |||||||  |||| |||||||||||| ||  || |||||||  ||||| | ||||||     
T  16045 ttttagtcctctccgttagtttttaaccttaaatgtctaagatgaaccaactttatagatggtccaccatagaccttattaaaccttttatttttaaccg 16144  T
Q  140 tttgatttttt 150  Q
    |||||| ||||    
T  16145 tttgatatttt 16155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 107
Target Start/End: Complemental strand, 77162 - 77128
Alignment:
Q  73 tgtctaaggtgaaccatatttaaagatggtccacc 107  Q
    ||||||||||||||||||||||||| |||||||||    
T  77162 tgtctaaggtgaaccatatttaaaggtggtccacc 77128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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