View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14111_low_10 (Length: 309)
Name: NF14111_low_10
Description: NF14111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14111_low_10 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 59 - 292
Target Start/End: Original strand, 32671154 - 32671385
Alignment:
| Q |
59 |
cctttaatttattacagtcaaccaaaattattatagtaattacttagaaaactcaataaatagctcctt------gtaggcattgtttgacgttcattca |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
32671154 |
cctttaatttattacagtcaaccaaaattattc---------cttagaaaactcaataaatagctcctttaatttgtaggcattgtttgacgttcattca |
32671244 |
T |
|
| Q |
153 |
tatttcaaaagaacatggcaacccaaatcaaccgagtgcatttt-tcattgcaattttatgcattttttctgttttaacttcaggtaacaaatttaatta |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32671245 |
tatttcaaaagaacatggcaacccaaatcaaccgagtgcattttttcattgcaattttatgcattttttctgttttaacttcaggtaacaaatttaatta |
32671344 |
T |
|
| Q |
252 |
ttcatgtgtgatcacgttattttatgtacaatgatccttca |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32671345 |
ttcatgtgtgatcacgttattttatgtacaatgatccttca |
32671385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 32671113 - 32671160
Alignment:
| Q |
1 |
taactacgatcaaatgaaattattaccgttaaacaatcacacctttaa |
48 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
32671113 |
taactacgatcaaatgaaattattaccgtcaaacaatcacacctttaa |
32671160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 247
Target Start/End: Original strand, 31435810 - 31435864
Alignment:
| Q |
193 |
tttttcattgcaattttatgcattttttctgttttaacttcaggtaacaaattta |
247 |
Q |
| |
|
||||||||||||||||| |||||| ||||||| ||||| |||||||||| |||| |
|
|
| T |
31435810 |
tttttcattgcaattttttgcattgtttctgtcataactccaggtaacaagttta |
31435864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 32487036 - 32486978
Alignment:
| Q |
63 |
taatttattacagtcaaccaaaattattatagtaa-ttacttagaaaactcaataaata |
120 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||| ||| ||||| |||| |||||||| |
|
|
| T |
32487036 |
taatttattgcagtcaaacaaaattattatagtaatttatttagagaacttaataaata |
32486978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 256
Target Start/End: Complemental strand, 32227290 - 32227189
Alignment:
| Q |
156 |
ttcaaaagaacatggcaacccaaatcaaccgagtgca-tttttcattgcaattttatgcattttttctgttttaacttcaggtaacaaatttaattattc |
254 |
Q |
| |
|
||||| ||||||||||||| | || ||||| ||||| ||||||||| || || |||||||| ||| |||||| | ||||||||||||||| |||||| |
|
|
| T |
32227290 |
ttcaagagaacatggcaactaatattaaccgtgtgcactttttcatttcagttgtatgcattgtttatgttttgtgtccaggtaacaaatttacttattc |
32227191 |
T |
|
| Q |
255 |
at |
256 |
Q |
| |
|
|| |
|
|
| T |
32227190 |
at |
32227189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 140
Target Start/End: Original strand, 34597714 - 34597751
Alignment:
| Q |
103 |
tagaaaactcaataaatagctccttgtaggcattgttt |
140 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
34597714 |
tagaaaactcaataaatagcttcttgtaggtattgttt |
34597751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 254
Target Start/End: Original strand, 22188566 - 22188627
Alignment:
| Q |
193 |
tttttcattgcaattttatgcattttttctgttttaacttcaggtaacaaatttaattattc |
254 |
Q |
| |
|
||||||||||||||| |||||||| || | |||| ||| |||||||||||||||||||||| |
|
|
| T |
22188566 |
tttttcattgcaattctatgcattgcttttcttttgactccaggtaacaaatttaattattc |
22188627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University