View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14111_low_12 (Length: 282)
Name: NF14111_low_12
Description: NF14111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14111_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 20 - 271
Target Start/End: Complemental strand, 53371059 - 53370809
Alignment:
| Q |
20 |
tttaattcttaatattattccttaaaataaaaacacgaactggcataatggcattatcatactcgccaaatcatgtttcgaaacagccaataagaaggat |
119 |
Q |
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| T |
53371059 |
tttaattcttaatattattccttaaaataaaaacacgaactggcataatggcattatcatactagccaaatcatgtttcgaaacagccaataagaaggat |
53370960 |
T |
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| Q |
120 |
atatttggtaccatataccagtatttaggcaataataaaacaaaatacagcagtaattggaataagggccccnnnnnnntaaagcattagaaatgcattg |
219 |
Q |
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| T |
53370959 |
atatttggtaccatataccagtatttagacaataataaaacaaaatacagcagtaattggaataagggccccaaaaaaataaagcattagaaatgcattg |
53370860 |
T |
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| Q |
220 |
gtaatcctatgaggcaacaaccatatacgcactggcctccttcttgtccttt |
271 |
Q |
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| T |
53370859 |
gtaatcctatgaggcaacaaccatatacgcactggcct-cttcttgtccttt |
53370809 |
T |
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