View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14111_low_14 (Length: 261)

Name: NF14111_low_14
Description: NF14111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14111_low_14
NF14111_low_14
[»] chr3 (8 HSPs)
chr3 (184-259)||(28520457-28520532)
chr3 (184-259)||(28505210-28505285)
chr3 (73-119)||(27472499-27472544)
chr3 (184-243)||(27904545-27904604)
chr3 (184-243)||(28477803-28477862)
chr3 (180-210)||(8543919-8543949)
chr3 (180-210)||(8547390-8547420)
chr3 (184-220)||(18093230-18093266)


Alignment Details
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 259
Target Start/End: Original strand, 28520457 - 28520532
Alignment:
Q  184 gtatgaacaatcttcccctttctccaatcttaaattctagttgtgcagcaaataaaagcagcagagactataacag 259  Q
    |||||||||||||||||||||||||||||| |||||  |||| | ||||||| |||||||  ||||||||||||||    
T  28520457 gtatgaacaatcttcccctttctccaatctgaaattgaagttctacagcaaacaaaagcaagagagactataacag 28520532  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 259
Target Start/End: Original strand, 28505210 - 28505285
Alignment:
Q  184 gtatgaacaatcttcccctttctccaatcttaaattctagttgtgcagcaaataaaagcagcagagactataacag 259  Q
    |||||||||||||||||||||||||||||| |||||   ||| | ||||||| |||||||  ||||||||||||||    
T  28505210 gtatgaacaatcttcccctttctccaatctgaaattgatgttctacagcaaagaaaagcaagagagactataacag 28505285  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 119
Target Start/End: Original strand, 27472499 - 27472544
Alignment:
Q  73 ctaaggtgaaatggactctatgttatgagcaacaacaatttaaaaaa 119  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  27472499 ctaaggtgaaa-ggactctatgttatgagcaacaacaatttaaaaaa 27472544  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 27904604 - 27904545
Alignment:
Q  184 gtatgaacaatcttcccctttctccaatcttaaattctagttgtgcagcaaataaaagca 243  Q
    |||||||||||||||||||||||||||||| |||||  |||| | ||||||| |||||||    
T  27904604 gtatgaacaatcttcccctttctccaatctgaaattgaagttctacagcaaacaaaagca 27904545  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 243
Target Start/End: Original strand, 28477803 - 28477862
Alignment:
Q  184 gtatgaacaatcttcccctttctccaatcttaaattctagttgtgcagcaaataaaagca 243  Q
    |||||||||||||||||||||||||||||| || ||  |||| | ||||||| |||||||    
T  28477803 gtatgaacaatcttcccctttctccaatctgaatttgaagttctacagcaaacaaaagca 28477862  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 210
Target Start/End: Original strand, 8543919 - 8543949
Alignment:
Q  180 agttgtatgaacaatcttcccctttctccaa 210  Q
    |||||||||||||||||||||||||||||||    
T  8543919 agttgtatgaacaatcttcccctttctccaa 8543949  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 210
Target Start/End: Original strand, 8547390 - 8547420
Alignment:
Q  180 agttgtatgaacaatcttcccctttctccaa 210  Q
    |||||||||||||||||||||||||||||||    
T  8547390 agttgtatgaacaatcttcccctttctccaa 8547420  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 18093230 - 18093266
Alignment:
Q  184 gtatgaacaatcttcccctttctccaatcttaaattc 220  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  18093230 gtatgaacaatctttccctttctccaatctgaaattc 18093266  T

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