View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14111_low_15 (Length: 260)
Name: NF14111_low_15
Description: NF14111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14111_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 15)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 27412530 - 27412293
Alignment:
| Q |
1 |
tgtaagcaagaagcaagtttttgaaattagaatggtttaggatgtgaatgaatgatttgtgtttgtcctaaatgcttgcagccatgaatatatatagata |
100 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27412530 |
tgtaagcaagaagcaagtttttgaaattaaaatggtttaggatgtgaatga----tttgtgtttgtcctaaatgcttgcagccatgaatatatatagata |
27412435 |
T |
|
| Q |
101 |
aaagaatattgagaaaccattggctacttgaatgatttgtggaggtttatactgtagtataggatcaggatggagtcatggaatctacaaggagacaaga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27412434 |
aaagaatattgagaaaccattggctacttgaatgattggtggaggtttatactgtagtataggatcaggatggagtcatggaatctacaaggagacaaga |
27412335 |
T |
|
| Q |
201 |
gcatatataagatcacatggtattgtcttagaggtctaccct |
242 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27412334 |
gcatatataagatcacatggtattgtcttagaggtctaccct |
27412293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 3 - 242
Target Start/End: Original strand, 27570334 - 27570570
Alignment:
| Q |
3 |
taagcaagaagcaagtttttgaaattagaatggtttaggatgtgaatgaatgatttgtgtttgtcctaaatgcttgcagccatgaatatatatagataaa |
102 |
Q |
| |
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||||||| || ||||||||| | ||| ||||| |||||||||||||||| |||||||| || |||||||||||||| ||||||||||||||| |||| |
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| T |
27570334 |
taagcaataaccaagtttttcagatttgaatgctttaggatgtgaatga----tttgtgttggttctaaatgcttgcagtcatgaatatatatagttaaa |
27570429 |
T |
|
| Q |
103 |
agaata-ttgagaaaccattggctacttgaatgatttgtggaggtttatactgtagtataggatcaggatggagtcatggaatctacaaggagacaagag |
201 |
Q |
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| T |
27570430 |
agaataattgagaaaccattggctacttgaatgattggtggaggtatatactgtagtataggatcaggatggagtcatggaatctacaaggagacaagag |
27570529 |
T |
|
| Q |
202 |
catatataagatcacatggtattgtcttagaggtctaccct |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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| T |
27570530 |
catatataagatcacatggtattgtcttagaggtctaccct |
27570570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 91 - 242
Target Start/End: Complemental strand, 27422991 - 27422840
Alignment:
| Q |
91 |
tatatagataaaagaatattgagaaaccattggctacttgaatgatttgtggaggtttatactgtagtataggatcaggatggagtcatggaatctacaa |
190 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||| ||| ||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27422991 |
tatatagataaaagaattttgagaaaccattggctacttgaattattagtggaagtatatactgtagtataggatcaggatggagtcatggaatctacaa |
27422892 |
T |
|
| Q |
191 |
ggagacaagagcatatataagatcacatggtattgtcttagaggtctaccct |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
27422891 |
ggagacaagagcatatataagatcacatggtattgtcttagaggcctaccct |
27422840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 27566232 - 27566369
Alignment:
| Q |
1 |
tgtaagcaagaagcaagtttttg-aaattagaatggtttaggatgtgaatgaatgatttgtgtttgtcctaaatgcttgcagccatgaatatatatagat |
99 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||| |||||||||||||| | |||||||||||||||||| |
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| T |
27566232 |
tgtaagcaagaagcaagtttttggaaattggaatggtttaggatgtgaa----tgatttgtgttggtcctaaatgcttgtaaccatgaatatatatagat |
27566327 |
T |
|
| Q |
100 |
aaaagaatattgagaaaccattggctacttgaatgatttgtg |
141 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||| |
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|
| T |
27566328 |
aaaagaatattgaaaaactgttggctacttgaatgatttgtg |
27566369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 27425670 - 27425540
Alignment:
| Q |
1 |
tgtaagcaagaagcaagtttttgaaattagaatggtttaggatgtgaatgaatgatttgtgtttgtcctaaatgcttgcagccatgaatatatatagata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||| |||| | |||||||||||||| |
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| T |
27425670 |
tgtaagcaagaagcaagtttttgaaattggaatggtttaggatgtgaatga----tttgtgttggtcctaaatgcttgtagcctttaatatatatagata |
27425575 |
T |
|
| Q |
101 |
aaagaatattgagaaaccattggctacttgaatga |
135 |
Q |
| |
|
| ||||||| || |||| |||||||||||||||| |
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|
| T |
27425574 |
agagaatatggaaaaactgttggctacttgaatga |
27425540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 229
Target Start/End: Complemental strand, 27415468 - 27415245
Alignment:
| Q |
14 |
caagtttttgaaattagaatggtttaggatgtgaatgaatgatttgtgtttgtcctaaatgcttgcagccatgaatatatatagataaaaga----atat |
109 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||| |||||||| |||||||||||||| |||| |||||||| |||||| ||||| |||| |
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|
| T |
27415468 |
caagtttttgaaaactgaatgctttaggatgtgaatgt----tttgtgttggtcctaaatgcttgtagccttgaatataaatagatgaaagaattcatat |
27415373 |
T |
|
| Q |
110 |
tgagaaaccattggctacttgaatgatttgtggaggttta--------tactgtagtataggatcaggatggagtcatggaatctacaaggagacaagag |
201 |
Q |
| |
|
|||||||| |||||||||||||||||| ||| |||| || | || ||||||||||| ||| ||| | || |||| ||||| |||||||||| |
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|
| T |
27415372 |
tgagaaacagttggctacttgaatgattggtgaaggtgtatcctatagtcctatagtataggattaggttggggacaaagaatatacaaagagacaagag |
27415273 |
T |
|
| Q |
202 |
catatataagatcacatggtattgtctt |
229 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
27415272 |
gatatataagatcacatggtattgtctt |
27415245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 27420249 - 27420021
Alignment:
| Q |
14 |
caagtttttgaaattagaatggtttaggatgtgaatgaatgatttgtgtttgtcctaaatgcttgcagccatgaatatatatagataaaagaa----tat |
109 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||| |||||||| |||||||||||||| |||| ||||||||||||||| ||||| | | |
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|
| T |
27420249 |
caagtttttgaaatctgaatgctttaggatgtgaatgt----tttgtgttggtcctaaatgcttgtagccttgaatatatatagatgtaagaactaattt |
27420154 |
T |
|
| Q |
110 |
tgagaaaccattggctacttgaatgatttgtg---gaggtttatactgtagtataggatca-------ggatggagtcatggaatctacaaggagacaag |
199 |
Q |
| |
|
|||||||| ||| |||||||||||||| ||| |||| ||| || |||||||| || | || | | |||| |||||||||||||| |||| |
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|
| T |
27420153 |
tgagaaacagttgcctacttgaatgattggtgaaggaggggtatcctatagtatagaattaaaatttaggttagggtcaaagaatctacaaggaggcaag |
27420054 |
T |
|
| Q |
200 |
agcatatataagatcacatggtattgtcttaga |
232 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |
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|
| T |
27420053 |
agcatatataagatcacatggtgttgtcttaga |
27420021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 27563698 - 27563759
Alignment:
| Q |
76 |
ttgcagccatgaatatatatagataaaagaatattgagaaaccattggctacttgaatgatt |
137 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
27563698 |
ttgcaaccatgaatatatatagataaaagaatattgcaaaactattggctacttgaatgatt |
27563759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 27516920 - 27516970
Alignment:
| Q |
49 |
tgaatgatttgtgtttgtcctaaatgcttgcagccatgaatatatatagat |
99 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
27516920 |
tgaatgatttgtgttggtgctaaatgcttgcagccatgaatatatatagat |
27516970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 27466643 - 27466588
Alignment:
| Q |
49 |
tgaatgatttgtgtttgtcctaaatgcttgcagccatgaatatatatagataaaag |
104 |
Q |
| |
|
||||||||||||||| || ||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
27466643 |
tgaatgatttgtgttggtgctaaaggcttgcagccatgaatatatatagatgaaag |
27466588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 232
Target Start/End: Original strand, 27566379 - 27566431
Alignment:
| Q |
181 |
gaatctacaa-ggagacaagagcatatataagatcacatggtattgtcttaga |
232 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
27566379 |
gaatctacaaaggagacaagagcatatacaagatcacatggaattgtcttaga |
27566431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 104
Target Start/End: Complemental strand, 27473716 - 27473661
Alignment:
| Q |
49 |
tgaatgatttgtgtttgtcctaaatgcttgcagccatgaatatatatagataaaag |
104 |
Q |
| |
|
||||||||||||||| | ||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
27473716 |
tgaatgatttgtgttgatgctaaaggcttgcagccatgaatatatatagatgaaag |
27473661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 27498228 - 27498175
Alignment:
| Q |
56 |
tttgtgtttgtcctaaatgcttgcagccatgaatatatatagataaaagaatat |
109 |
Q |
| |
|
|||||||||||||||| |||||| || ||||||||||||||||| |||| |||| |
|
|
| T |
27498228 |
tttgtgtttgtcctaactgcttgaaggcatgaatatatatagatgaaaggatat |
27498175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 27557307 - 27557259
Alignment:
| Q |
56 |
tttgtgtttgtcctaaatgcttgcagccatgaatatatatagataaaag |
104 |
Q |
| |
|
|||||||| |||||||||||||||| | |||||||||||||||| |||| |
|
|
| T |
27557307 |
tttgtgttggtcctaaatgcttgcaactatgaatatatatagatgaaag |
27557259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 27563639 - 27563687
Alignment:
| Q |
3 |
taagcaagaagcaagtttttgaaattagaatggtttaggatgtgaatga |
51 |
Q |
| |
|
||||||| || ||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
27563639 |
taagcaataaccaagtttttgaaatttgaatgctttaggatgtgaatga |
27563687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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