View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14111_low_18 (Length: 253)
Name: NF14111_low_18
Description: NF14111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14111_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 8014304 - 8014089
Alignment:
| Q |
19 |
aggaaacttattatacttacttgttaacacctacgaatattttatgnnnnnnnnnnnnncttttcgaaaaagaa--tataaacatggtaaacatctagat |
116 |
Q |
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| T |
8014304 |
aggaaacttattatacttacttgttaacacctacgaatattttatgttttttttt-----tttgcaaaaaaaaaaatataaacattgtaaacatctaaat |
8014210 |
T |
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| Q |
117 |
tagatttagctgaatcttctttatcgcttaataaatgatagtccaactagnnnnnnntcaaatatagaagaaatgtttctcaagtcaactatagcttatg |
216 |
Q |
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||||||||||||||||| || || |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| | |||||| |
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| T |
8014209 |
tagatttagctgaatctcctctaccgcttaataaataatagtccaactag-aaaaaatcaaatatagaagaaatgtttctcaagtcaactacaacttatg |
8014111 |
T |
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| Q |
217 |
tcggatcgtgagtgtcagaatt |
238 |
Q |
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||||||||||| ||| |||||| |
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| T |
8014110 |
tcggatcgtgaatgttagaatt |
8014089 |
T |
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