View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14111_low_2 (Length: 657)
Name: NF14111_low_2
Description: NF14111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14111_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 587; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 15 - 633
Target Start/End: Complemental strand, 32220853 - 32220235
Alignment:
| Q |
15 |
agttcacatgatgtaatattttcagttcaactttgttgggaggcttcttggcccaaggggtaattcgttgaagcgagtggaggctactactggttgccgc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32220853 |
agttcacatgatgtaatattttcagttcaactttgttgggaggcttcttggcccaaggggtaattcgttgaagcgagtggaggctactactggttgccgc |
32220754 |
T |
|
| Q |
115 |
gtatttatcagagggaaaggttcaataaaagactttgataaggtattttctctcccttgatggattgttttccaagtaatcaaaatctaatttgctatca |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
32220753 |
gtatttatcagagggaaaggttcaataaaagactttgataaggtattttctctcccttggtggattgttttccaagtaaacaaaatctaatttgctatca |
32220654 |
T |
|
| Q |
215 |
cactgttagatttttatgttgagatgttcaacattgctgaacttggtgcgtggataatatgatgaatggtctaaattgatagactctggtataatattaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32220653 |
cactgttagatttttatgttgagatgttcaacattgttgaacttggtgcgtggataatatgatgaatggtctaaattgatagactctggtatcatattaa |
32220554 |
T |
|
| Q |
315 |
tacaattttaaaaccgaattcgtaaggtggaagtgacattctgtgtaaccgttttcaaatctaatctcatacgaaccttcttttgatttgtgtttgtttt |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32220553 |
tacaattttaaaaccgaattcgtaaggtggaagtgacattctgtataaccgttttcaaatctaatctcatacgaaccttcttttgatttgtgtttgtttt |
32220454 |
T |
|
| Q |
415 |
ttctcctattttgttataatctaaaggaagagttgttgaggggaaggccaggatttgagcacttgaatgaaccactgcacagtttgatcgaggctgagct |
514 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32220453 |
ttctcctatttttttataatctaaaggaagagttgttgaggggaaggccaggatttgagcacttgaatgaaccactgcacattttgatcgaggctgagct |
32220354 |
T |
|
| Q |
515 |
acctgtcaatgttgttgatttaaggttgagacaagcacaagaaatcatagaagagctactcaaacctgtggtatttatatttttcaactctcttgttatt |
614 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32220353 |
acctgtcaatgttgttgatttaaggttgagacaagcacaagaaatcatagaagagctactcaaacctgtggtatttatatttttcaactctcttgttatt |
32220254 |
T |
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| Q |
615 |
tcagtaacatgaataacag |
633 |
Q |
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||||||| ||||||||||| |
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| T |
32220253 |
tcagtaatatgaataacag |
32220235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 32 - 160
Target Start/End: Complemental strand, 28306005 - 28305877
Alignment:
| Q |
32 |
attttcagttcaactttgttgggaggcttcttggcccaaggggtaattcgttgaagcgagtggaggctactactggttgccgcgtatttatcagagggaa |
131 |
Q |
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|||||||||| || ||||||||||||||||||||||| ||||||||||| ||||||| || |||||||| || ||||||||||||| ||| |||||||| |
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| T |
28306005 |
attttcagtttaattttgttgggaggcttcttggccctaggggtaattcactgaagcgtgtagaggctaccacaggttgccgcgtatatattagagggaa |
28305906 |
T |
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| Q |
132 |
aggttcaataaaagactttgataaggtat |
160 |
Q |
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||||||||| |||||| | || ||||||| |
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| T |
28305905 |
aggttcaattaaagacctagacaaggtat |
28305877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 437 - 588
Target Start/End: Complemental strand, 28305590 - 28305439
Alignment:
| Q |
437 |
aaaggaagagttgttgaggggaaggccaggatttgagcacttgaatgaaccactgcacagtttgatcgaggctgagctacctgtcaatgttgttgattta |
536 |
Q |
| |
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||||||||| ||||| |||||||||||||| | ||||||| ||| ||| ||| |||| || || || ||||| ||||||| ||| |||| ||| || |
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| T |
28305590 |
aaaggaagaattgttaaggggaaggccaggctatgagcacctgagtgatgaacttcacatcttaattgaagctgaactacctgctaatattgtcgatgta |
28305491 |
T |
|
| Q |
537 |
aggttgagacaagcacaagaaatcatagaagagctactcaaacctgtggtat |
588 |
Q |
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| T |
28305490 |
aggttgaggcacgcacaagaaatcatagaagagctacttaagcctgtggtat |
28305439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 553 - 633
Target Start/End: Original strand, 21532850 - 21532928
Alignment:
| Q |
553 |
aagaaatcatagaagagctactcaaacctgtggtatttatatttttcaactctcttgttatttcagtaacatgaataacag |
633 |
Q |
| |
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|||||||||||||||||||||||| || |||||||||| |||||||||| ||||||| |||| ||||| ||||||||||| |
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| T |
21532850 |
aagaaatcatagaagagctactcagacatgtggtatttctatttttcaa--ctcttgtaattttagtaatatgaataacag |
21532928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 553 - 633
Target Start/End: Original strand, 35168795 - 35168873
Alignment:
| Q |
553 |
aagaaatcatagaagagctactcaaacctgtggtatttatatttttcaactctcttgttatttcagtaacatgaataacag |
633 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||| |||||||||| ||||||| |||| ||||| ||||||||||| |
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| T |
35168795 |
aagaaatcatagaagagctactcagacatgtggtatttctatttttcaa--ctcttgtaattttagtaatatgaataacag |
35168873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 7e-17; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 553 - 633
Target Start/End: Complemental strand, 43312291 - 43312213
Alignment:
| Q |
553 |
aagaaatcatagaagagctactcaaacctgtggtatttatatttttcaactctcttgttatttcagtaacatgaataacag |
633 |
Q |
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|||||||||||||||||||||||| || |||||||||| |||||||||| ||||||| |||| ||||| ||||||||||| |
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| T |
43312291 |
aagaaatcatagaagagctactcagacatgtggtatttctatttttcaa--ctcttgtaattttagtaatatgaataacag |
43312213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 498 - 588
Target Start/End: Complemental strand, 27672915 - 27672825
Alignment:
| Q |
498 |
ttgatcgaggctgagctacctgtcaatgttgttgatttaaggttgagacaagcacaagaaatcatagaagagctactcaaacctgtggtat |
588 |
Q |
| |
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||||| |||||||| |||||| |||||||||||| ||||| | ||||| || || |||||||||||||| || |||||||||||||||| |
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| T |
27672915 |
ttgattgaggctgatttacctgccaatgttgttgacataaggctcagacaggctcaggaaatcatagaagaactgctcaaacctgtggtat |
27672825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 46 - 146
Target Start/End: Complemental strand, 27673221 - 27673121
Alignment:
| Q |
46 |
tttgttgggaggcttcttggcccaaggggtaattcgttgaagcgagtggaggctactactggttgccgcgtatttatcagagggaaaggttcaataaaag |
145 |
Q |
| |
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|||||||| || ||||| || || || || ||||| ||||| || || || |||||||||||||||||||| | ||| ||||| || || |||||||||| |
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| T |
27673221 |
tttgttggaagacttctgggacctagaggcaattctttgaaacgggtagaagctactactggttgccgcgtgtatattagaggaaagggatcaataaaag |
27673122 |
T |
|
| Q |
146 |
a |
146 |
Q |
| |
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| |
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| T |
27673121 |
a |
27673121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 553 - 633
Target Start/End: Original strand, 34745039 - 34745117
Alignment:
| Q |
553 |
aagaaatcatagaagagctactcaaacctgtggtatttatatttttcaactctcttgttatttcagtaacatgaataacag |
633 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||| |||||||||| ||||||| |||| ||||| ||||||||||| |
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|
| T |
34745039 |
aagaaatcatagaagagctactcagacatgtggtatttctatttttcaa--ctcttgtaattttagtaatatgaataacag |
34745117 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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